RNA–Protein interactions for RNA: ENST00000611963.4

TARDBP-213, Transcript of TAR DNA binding protein, humanhuman

TSL 5

Gene TARDBP, Length 739 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TARDBP-213ENST00000611963 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.77□□□□□ -1.175e-8■■■■■ 204.6
TARDBP-213ENST00000611963 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.64□□□□□ -1.358e-12■■■■■ 44.5
TARDBP-213ENST00000611963 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.58□□□□□ -1.048e-12■■■■■ 35.2
TARDBP-213ENST00000611963 SMNDC1O75940 238 aaKnown RBP eCLIP7.36□□□□□ -1.232e-8■■■■■ 29.2
TARDBP-213ENST00000611963 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.04□□□□□ -1.127e-6■■■■■ 27.5
TARDBP-213ENST00000611963 TARDBPQ13148 414 aaKnown RBP eCLIP7.51□□□□□ -1.211e-13■■■■■ 26.9
TARDBP-213ENST00000611963 RBM22Q9NW64 420 aaKnown RBP eCLIP8.25□□□□□ -1.091e-7■■■■□ 22.6
TARDBP-213ENST00000611963 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.27□□□□□ -1.253e-6■■■■□ 22.6
TARDBP-213ENST00000611963 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.78□□□□□ -11e-9■■■■□ 21.2
TARDBP-213ENST00000611963 SRSF7Q16629 238 aaKnown RBP eCLIP6.73□□□□□ -1.332e-10■■■□□ 18.4
TARDBP-213ENST00000611963 GTF2F1P35269 517 aaKnown RBP eCLIP8.47□□□□□ -1.057e-26■■■□□ 18.2
TARDBP-213ENST00000611963 TIA1P31483 386 aaKnown RBP eCLIP7.73□□□□□ -1.172e-7■■■□□ 17.4
TARDBP-213ENST00000611963 U2AF1Q01081 240 aaKnown RBP eCLIP10.74□□□□□ -0.693e-7■■■□□ 15.3
TARDBP-213ENST00000611963 UPF1Q92900 1129 aaKnown RBP eCLIP10.74□□□□□ -0.692e-11■■■□□ 15.1
TARDBP-213ENST00000611963 AQRO60306 1485 aaKnown RBP eCLIP13.42□□□□□ -0.265e-11■■□□□ 14.4
TARDBP-213ENST00000611963 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.42□□□□□ -0.745e-10■■□□□ 13.1
TARDBP-213ENST00000611963 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13□□□□□ -0.332e-9■■□□□ 12.6
TARDBP-213ENST00000611963 PRPF4O43172 522 aaKnown RBP eCLIP8.07□□□□□ -1.122e-14■■□□□ 12.4
TARDBP-213ENST00000611963 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.69□□□□□ -1.182e-21■■□□□ 12.4
TARDBP-213ENST00000611963 CDC40O60508 579 aaKnown RBP eCLIP7.37□□□□□ -1.235e-6■■□□□ 12.3
TARDBP-213ENST00000611963 GRSF1Q12849 480 aaKnown RBP eCLIP8.04□□□□□ -1.121e-11■■□□□ 12.1
TARDBP-213ENST00000611963 EIF4G2P78344 907 aaKnown RBP eCLIP11.43□□□□□ -0.588e-11■■□□□ 12.1
TARDBP-213ENST00000611963 FUSP35637 526 aaKnown RBP eCLIP5.22□□□□□ -1.573e-10■■□□□ 12.1
TARDBP-213ENST00000611963 ZC3H11AO75152 810 aaKnown RBP eCLIP8.69□□□□□ -1.021e-7■■□□□ 12
TARDBP-213ENST00000611963 LSM11P83369 360 aaKnown RBP eCLIP8.94□□□□□ -0.983e-9■■□□□ 11.9
TARDBP-213ENST00000611963 TIAL1Q01085 375 aaKnown RBP eCLIP8.04□□□□□ -1.126e-7■■□□□ 11.7
TARDBP-213ENST00000611963 FXR2P51116 673 aaKnown RBP eCLIP11.07□□□□□ -0.642e-7■■□□□ 11.5
TARDBP-213ENST00000611963 SF3B4Q15427 424 aaKnown RBP eCLIP7.06□□□□□ -1.284e-7■■□□□ 11.4
TARDBP-213ENST00000611963 SRSF1Q07955 248 aaKnown RBP eCLIP7.12□□□□□ -1.273e-8■■□□□ 11.4
TARDBP-213ENST00000611963 KHSRPQ92945 711 aaKnown RBP eCLIP9.37□□□□□ -0.911e-9■□□□□ 11
TARDBP-213ENST00000611963 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.65□□□□□ -1.021e-6■□□□□ 10.9
TARDBP-213ENST00000611963 U2AF2P26368 475 aaKnown RBP eCLIP9.3□□□□□ -0.922e-10■□□□□ 10.5
TARDBP-213ENST00000611963 ZRANB2O95218 330 aaKnown RBP eCLIP8.43□□□□□ -1.065e-13■□□□□ 10.2
TARDBP-213ENST00000611963 G3BP1Q13283 466 aaKnown RBP eCLIP9.98□□□□□ -0.815e-9■□□□□ 10.1
TARDBP-213ENST00000611963 DDX6P26196 483 aaKnown RBP eCLIP8.27□□□□□ -1.095e-34■□□□□ 10
TARDBP-213ENST00000611963 SUB1P53999 127 aaKnown RBP eCLIP6.38□□□□□ -1.391e-11■□□□□ 9.4
TARDBP-213ENST00000611963 ZNF622Q969S3 477 aaKnown RBP eCLIP9.79□□□□□ -0.843e-23■□□□□ 9.1
TARDBP-213ENST00000611963 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.81□□□□□ -18e-12■□□□□ 8.9
TARDBP-213ENST00000611963 PPIGQ13427 754 aaKnown RBP eCLIP8.63□□□□□ -1.036e-7■□□□□ 8.8
TARDBP-213ENST00000611963 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.72□□□□□ -0.852e-12■□□□□ 8.7
TARDBP-213ENST00000611963 ILF3Q12906 894 aaKnown RBP eCLIP7.82□□□□□ -1.166e-6■□□□□ 8.6
TARDBP-213ENST00000611963 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.28□□□□□ -0.923e-13■□□□□ 8.3
TARDBP-213ENST00000611963 YBX3P16989 372 aaKnown RBP eCLIP10□□□□□ -0.818e-13■□□□□ 8.1
Retrieved 43 of 43 RNA–protein pairs in 10.4 ms