RNA–Protein interactions for RNA: ENST00000611405.4

SRRT-213, Transcript of serrate, RNA effector molecule, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SRRT, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRT-213ENST00000611405 DDX3XO00571 662 aaKnown RBP eCLIP12.97□□□□□ -0.333e-25■□□□□ 10.6
SRRT-213ENST00000611405 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.11□□□□□ -0.471e-20■■■■□ 22.3
SRRT-213ENST00000611405 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.23□□□□□ -0.611e-16■□□□□ 10.7
SRRT-213ENST00000611405 LARP4Q71RC2 724 aaKnown RBP eCLIP11.87□□□□□ -0.519e-14■■■■■ 49.8
SRRT-213ENST00000611405 ZRANB2O95218 330 aaKnown RBP eCLIP13.17□□□□□ -0.36e-11■■■■■ 26.8
SRRT-213ENST00000611405 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.93□□□□□ -0.662e-10■■■□□ 14.8
SRRT-213ENST00000611405 FXR2P51116 673 aaKnown RBP eCLIP13.4□□□□□ -0.265e-10■■■□□ 17.2
SRRT-213ENST00000611405 RPS3P23396 243 aaKnown RBP eCLIP11.81□□□□□ -0.528e-10■■■■■ 65.9
SRRT-213ENST00000611405 ZNF622Q969S3 477 aaKnown RBP eCLIP13.44□□□□□ -0.261e-9■■■□□ 15.8
SRRT-213ENST00000611405 AQRO60306 1485 aaKnown RBP eCLIP17.77■□□□□ 0.431e-9■■■■■ 27
SRRT-213ENST00000611405 PTBP1P26599 531 aaKnown RBP eCLIP10.93□□□□□ -0.664e-9■■■■■ 33.4
SRRT-213ENST00000611405 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.89□□□□□ -0.357e-9■■■■□ 21.3
SRRT-213ENST00000611405 MATR3P43243 847 aaKnown RBP eCLIP12.96□□□□□ -0.331e-8■■■■■ 28.4
SRRT-213ENST00000611405 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.41□□□□□ -0.261e-8■■■■□ 22
SRRT-213ENST00000611405 SRSF1Q07955 248 aaKnown RBP eCLIP9.07□□□□□ -0.962e-8■■■□□ 14.7
SRRT-213ENST00000611405 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.9□□□□□ -0.342e-8■■□□□ 12.8
SRRT-213ENST00000611405 RBM22Q9NW64 420 aaKnown RBP eCLIP12.12□□□□□ -0.473e-8■■□□□ 14.4
SRRT-213ENST00000611405 U2AF2P26368 475 aaKnown RBP eCLIP13.82□□□□□ -0.23e-8■■■□□ 16.6
SRRT-213ENST00000611405 PCBP1Q15365 356 aaKnown RBP eCLIP12.52□□□□□ -0.46e-8■■■■□ 20.1
SRRT-213ENST00000611405 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.84□□□□□ -0.517e-8■■□□□ 12.9
SRRT-213ENST00000611405 RBM15Q96T37 977 aaKnown RBP eCLIP12.53□□□□□ -0.41e-7■□□□□ 11.3
SRRT-213ENST00000611405 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.49■□□□□ 0.231e-7■■■□□ 18.8
SRRT-213ENST00000611405 TRA2AQ13595 282 aaKnown RBP eCLIP10.68□□□□□ -0.71e-7■■■■■ 27.7
SRRT-213ENST00000611405 PUM1Q14671 1186 aaKnown RBP eCLIP11.3□□□□□ -0.62e-7■□□□□ 10.9
SRRT-213ENST00000611405 ZC3H11AO75152 810 aaKnown RBP eCLIP12.85□□□□□ -0.352e-7■■■■■ 28.2
SRRT-213ENST00000611405 SF3B4Q15427 424 aaKnown RBP eCLIP10.72□□□□□ -0.692e-7■■■■■ 28.2
SRRT-213ENST00000611405 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.83□□□□□ -0.363e-7■■■■■ 139.6
SRRT-213ENST00000611405 G3BP1Q13283 466 aaKnown RBP eCLIP14.49□□□□□ -0.093e-7■■■■□ 21.5
SRRT-213ENST00000611405 PPIGQ13427 754 aaKnown RBP eCLIP11.65□□□□□ -0.543e-7■■□□□ 13.7
SRRT-213ENST00000611405 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.88□□□□□ -0.354e-7■■■■■ 58.1
SRRT-213ENST00000611405 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.08□□□□□ -0.484e-7■□□□□ 11.1
SRRT-213ENST00000611405 RBFOX2O43251 390 aaKnown RBP eCLIP9.89□□□□□ -0.835e-7■■□□□ 12.7
SRRT-213ENST00000611405 PABPC4Q13310 644 aaKnown RBP eCLIP13.18□□□□□ -0.35e-7■■□□□ 13.1
SRRT-213ENST00000611405 DDX42Q86XP3 938 aaKnown RBP eCLIP12.78□□□□□ -0.366e-7■□□□□ 10.1
SRRT-213ENST00000611405 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.05□□□□□ -0.966e-7■■■□□ 19
SRRT-213ENST00000611405 WRNQ14191 1432 aaPredicted RBP eCLIP18.93■□□□□ 0.626e-7■■■■■ 33.4
SRRT-213ENST00000611405 GPKOWQ92917 476 aaPredicted RBP eCLIP13.57□□□□□ -0.246e-7■□□□□ 8.4
SRRT-213ENST00000611405 EFTUD2Q15029 972 aaKnown RBP eCLIP12.38□□□□□ -0.436e-7■■■■□ 22.9
SRRT-213ENST00000611405 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.1□□□□□ -0.157e-7■■□□□ 13.3
SRRT-213ENST00000611405 U2AF1Q01081 240 aaKnown RBP eCLIP15.53■□□□□ 0.087e-7■■■□□ 19.2
SRRT-213ENST00000611405 HNRNPKP61978 463 aaKnown RBP eCLIP10.98□□□□□ -0.657e-7■■□□□ 13.8
SRRT-213ENST00000611405 QKIQ96PU8 341 aaKnown RBP eCLIP12.37□□□□□ -0.438e-7■□□□□ 10.2
SRRT-213ENST00000611405 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.66□□□□□ -0.068e-7■□□□□ 8.8
SRRT-213ENST00000611405 SF3A3Q12874 501 aaKnown RBP eCLIP12.38□□□□□ -0.431e-6■■■□□ 18.1
SRRT-213ENST00000611405 PABPN1Q86U42 306 aaKnown RBP eCLIP19.46■□□□□ 0.711e-6■■■■□ 20.3
SRRT-213ENST00000611405 PCBP2Q15366 365 aaKnown RBP eCLIP11.78□□□□□ -0.521e-6■■□□□ 12.9
SRRT-213ENST00000611405 LSM11P83369 360 aaKnown RBP eCLIP11.14□□□□□ -0.631e-6■■■□□ 15.4
SRRT-213ENST00000611405 YBX3P16989 372 aaKnown RBP eCLIP12.62□□□□□ -0.392e-6■■□□□ 13.2
SRRT-213ENST00000611405 FTOQ9C0B1 505 aaKnown RBP eCLIP13.9□□□□□ -0.182e-6■■■■□ 19.3
SRRT-213ENST00000611405 SMNDC1O75940 238 aaKnown RBP eCLIP11.87□□□□□ -0.512e-6■□□□□ 9.4
SRRT-213ENST00000611405 SF3B1O75533 1304 aaKnown RBP eCLIP12.33□□□□□ -0.442e-6■■■■■ 28.4
SRRT-213ENST00000611405 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.32□□□□□ -0.282e-6■■■□□ 15.7
SRRT-213ENST00000611405 EIF3DO15371 548 aaKnown RBP eCLIP13.12□□□□□ -0.313e-6■□□□□ 11.2
SRRT-213ENST00000611405 FMR1Q06787 632 aaKnown RBP eCLIP13.55□□□□□ -0.244e-6■■□□□ 11.9
SRRT-213ENST00000611405 AARSP49588 968 aaKnown RBP eCLIP12.95□□□□□ -0.345e-6■■■□□ 15.1
SRRT-213ENST00000611405 CPSF6Q16630 551 aaKnown RBP eCLIP11.63□□□□□ -0.555e-6■■□□□ 12.7
SRRT-213ENST00000611405 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.72■□□□□ 0.275e-6■■■■□ 19.7
SRRT-213ENST00000611405 GTF2F1P35269 517 aaKnown RBP eCLIP13.6□□□□□ -0.235e-6■■■■□ 24.4
SRRT-213ENST00000611405 TIA1P31483 386 aaKnown RBP eCLIP11.5□□□□□ -0.575e-6■□□□□ 8.4
SRRT-213ENST00000611405 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.2□□□□□ -0.466e-6■■■■□ 22.9
Retrieved 60 of 60 RNA–protein pairs in 13.2 ms