RNA–Protein interactions for RNA: ENST00000610756.4

TCF3-219, Transcript of transcription factor 3, humanhuman

TSL 1 (best)

Gene TCF3, Length 1,343 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF3-219ENST00000610756 NISCHQ9Y2I1 1504 aa47.22■■■■■ 5.15
TCF3-219ENST00000610756 CCDC180Q9P1Z9 1646 aa41.98■■■■■ 4.31
TCF3-219ENST00000610756 ABCC9O60706 1549 aa41.45■■■■■ 4.23
TCF3-219ENST00000610756 RB1CC1Q8TDY2 1594 aa39.72■■■■□ 3.95
TCF3-219ENST00000610756 DCAF8L2P0C7V8 631 aa39.67■■■■□ 3.94
TCF3-219ENST00000610756 NACADO15069 1562 aa39.64■■■■□ 3.94
TCF3-219ENST00000610756 MYO15BQ96JP2 1530 aa39.36■■■■□ 3.89
TCF3-219ENST00000610756 ZCCHC6Q5VYS8 1495 aaKnown RBP39.23■■■■□ 3.87
TCF3-219ENST00000610756 DCAF1Q9Y4B6 1507 aa39.07■■■■□ 3.84
TCF3-219ENST00000610756 PABPN1Q86U42 306 aaKnown RBP eCLIP38.78■■■■□ 3.81e-6■□□□□ 9.3
TCF3-219ENST00000610756 UNC13AQ9UPW8 1703 aa38.67■■■■□ 3.78
TCF3-219ENST00000610756 BICRAQ9NZM4 1560 aa38.53■■■■□ 3.76
TCF3-219ENST00000610756 DNAJC5BQ9UF47 199 aa38.44■■■■□ 3.74
TCF3-219ENST00000610756 SCRIBQ14160 1630 aa38.28■■■■□ 3.72
TCF3-219ENST00000610756 SHROOM4Q9ULL8 1493 aa38.14■■■■□ 3.7
TCF3-219ENST00000610756 EIF4G1Q04637 1599 aaKnown RBP37.54■■■■□ 3.6
TCF3-219ENST00000610756 CC2D2AQ9P2K1 1620 aa37.43■■■■□ 3.58
TCF3-219ENST00000610756 CECR2Q9BXF3 1484 aa37.3■■■■□ 3.56
TCF3-219ENST00000610756 NCAPD3P42695 1498 aa36.66■■■■□ 3.46
TCF3-219ENST00000610756 SMARCA4P51532 1647 aa36.63■■■■□ 3.45
TCF3-219ENST00000610756 ATAD2BQ9ULI0 1458 aa36.59■■■■□ 3.45
TCF3-219ENST00000610756 BAZ1AQ9NRL2 1556 aaPredicted RBP36.59■■■■□ 3.45
TCF3-219ENST00000610756 SMARCA2P51531 1590 aa36.49■■■■□ 3.43
TCF3-219ENST00000610756 MROH2BQ7Z745 1585 aa36.36■■■■□ 3.41
TCF3-219ENST00000610756 HMGXB3Q12766 1538 aa36.34■■■■□ 3.41
TCF3-219ENST00000610756 PEG3Q9GZU2 1588 aa36.32■■■■□ 3.41
TCF3-219ENST00000610756 BAZ1BQ9UIG0 1483 aaKnown RBP36.23■■■■□ 3.39
TCF3-219ENST00000610756 RSF1Q96T23 1441 aaPredicted RBP35.91■■■■□ 3.34
TCF3-219ENST00000610756 WIZO95785 1651 aa35.9■■■■□ 3.34
TCF3-219ENST00000610756 NESP48681 1621 aa35.78■■■■□ 3.32
TCF3-219ENST00000610756 ERCC6Q03468 1493 aa35.74■■■■□ 3.31
TCF3-219ENST00000610756 LAMC3Q9Y6N6 1575 aa35.64■■■■□ 3.3
TCF3-219ENST00000610756 CADPSQ9ULU8 1353 aa35.58■■■■□ 3.29
TCF3-219ENST00000610756 TOP2AP11388 1531 aaKnown RBP35.52■■■■□ 3.28
TCF3-219ENST00000610756 PDS5BQ9NTI5 1447 aa35.5■■■■□ 3.27
TCF3-219ENST00000610756 CUX2O14529 1486 aa35.49■■■■□ 3.27
TCF3-219ENST00000610756 CFTRP13569 1480 aa35.28■■■■□ 3.24
TCF3-219ENST00000610756 KIF21AQ7Z4S6 1674 aa35.22■■■■□ 3.23
TCF3-219ENST00000610756 THOC2Q8NI27 1593 aaKnown RBP35.21■■■■□ 3.23
TCF3-219ENST00000610756 CCDC88BA6NC98 1476 aa35.18■■■■□ 3.22
TCF3-219ENST00000610756 FANCD2Q9BXW9 1451 aa35.1■■■■□ 3.21
TCF3-219ENST00000610756 MRC2Q9UBG0 1479 aa35.08■■■■□ 3.21
TCF3-219ENST00000610756 CEP164Q9UPV0 1460 aa35.06■■■■□ 3.2
TCF3-219ENST00000610756 WDR62O43379 1518 aa34.95■■■■□ 3.19
TCF3-219ENST00000610756 DNAJC5Q9H3Z4 198 aa34.88■■■■□ 3.17
TCF3-219ENST00000610756 SUPT5HO00267 1087 aaKnown RBP34.81■■■■□ 3.16
TCF3-219ENST00000610756 URB2Q14146 1524 aaKnown RBP34.76■■■■□ 3.15
TCF3-219ENST00000610756 PRDM2Q13029 1718 aa34.74■■■■□ 3.15
TCF3-219ENST00000610756 ABCC8Q09428 1581 aa34.53■■■■□ 3.12
TCF3-219ENST00000610756 TOPBP1Q92547 1522 aa34.49■■■■□ 3.11
TCF3-219ENST00000610756 DNMBPQ6XZF7 1577 aa34.39■■■■□ 3.1
TCF3-219ENST00000610756 IFT140Q96RY7 1462 aa34.38■■■■□ 3.09
TCF3-219ENST00000610756 ZNF608Q9ULD9 1512 aaPredicted RBP34.22■■■■□ 3.07
TCF3-219ENST00000610756 POLA1P09884 1462 aaPredicted RBP34.19■■■■□ 3.06
TCF3-219ENST00000610756 SOGA1O94964 1423 aa34.12■■■■□ 3.05
TCF3-219ENST00000610756 OSCARQ8IYS5 282 aa34.11■■■■□ 3.05
TCF3-219ENST00000610756 CUX1P39880 1505 aa34.11■■■■□ 3.05
TCF3-219ENST00000610756 TARBP1Q13395 1621 aaKnown RBP34.11■■■■□ 3.05
TCF3-219ENST00000610756 RAD54L2Q9Y4B4 1467 aa34.06■■■■□ 3.04
TCF3-219ENST00000610756 AQRO60306 1485 aaKnown RBP eCLIP34.05■■■■□ 3.046e-7■■■■□ 23.5
TCF3-219ENST00000610756 FGD5Q6ZNL6 1462 aa34.05■■■■□ 3.04
TCF3-219ENST00000610756 EIF4G3O43432 1585 aaKnown RBP33.98■■■■□ 3.03
TCF3-219ENST00000610756 TDRD9Q8NDG6 1382 aaKnown RBP33.96■■■■□ 3.03
TCF3-219ENST00000610756 WRNQ14191 1432 aaPredicted RBP eCLIP33.84■■■■□ 3.01
TCF3-219ENST00000610756 WDR97A6NE52 1622 aa33.82■■■■□ 3.01
TCF3-219ENST00000610756 ABCA10Q8WWZ4 1543 aa33.74■■■□□ 2.99
TCF3-219ENST00000610756 TOP2BQ02880 1626 aa33.73■■■□□ 2.99
TCF3-219ENST00000610756 FBLN2P98095 1184 aa33.73■■■□□ 2.99
TCF3-219ENST00000610756 GRIN2BQ13224 1484 aa33.7■■■□□ 2.99
TCF3-219ENST00000610756 SYNJ1O43426 1573 aa33.68■■■□□ 2.98
TCF3-219ENST00000610756 BIVM-ERCC5R4GMW8 1640 aa33.68■■■□□ 2.98
TCF3-219ENST00000610756 GAPVD1Q14C86 1478 aa33.67■■■□□ 2.98
TCF3-219ENST00000610756 SNAPC4Q5SXM2 1469 aa33.65■■■□□ 2.98
TCF3-219ENST00000610756 MAGI1Q96QZ7 1491 aaPredicted RBP33.63■■■□□ 2.97
TCF3-219ENST00000610756 CHMP7Q8WUX9 453 aaPredicted RBP33.62■■■□□ 2.97
TCF3-219ENST00000610756 CHD1O14646 1710 aa33.56■■■□□ 2.96
TCF3-219ENST00000610756 ABCA5Q8WWZ7 1642 aa33.54■■■□□ 2.96
TCF3-219ENST00000610756 TRIM41Q8WV44 630 aa33.52■■■□□ 2.96
TCF3-219ENST00000610756 SYNJ2O15056 1496 aa33.51■■■□□ 2.96
TCF3-219ENST00000610756 PBRM1Q86U86 1689 aa33.44■■■□□ 2.94
TCF3-219ENST00000610756 ARHGEF11O15085 1522 aa33.4■■■□□ 2.94
TCF3-219ENST00000610756 RIMBP3CA6NJZ7 1639 aa33.38■■■□□ 2.93
TCF3-219ENST00000610756 RIMBP3BA6NNM3 1639 aa33.38■■■□□ 2.93
TCF3-219ENST00000610756 RIMBP3Q9UFD9 1639 aa33.38■■■□□ 2.93
TCF3-219ENST00000610756 ERICH3Q5RHP9 1530 aa33.32■■■□□ 2.92
TCF3-219ENST00000610756 FHAD1B1AJZ9 1412 aa33.29■■■□□ 2.92
TCF3-219ENST00000610756 CLASP1Q7Z460 1538 aa33.29■■■□□ 2.92
TCF3-219ENST00000610756 GRIN2AQ12879 1464 aa33.25■■■□□ 2.91
TCF3-219ENST00000610756 CYB5RLQ6IPT4 315 aa33.24■■■□□ 2.91
TCF3-219ENST00000610756 ADAMTS12P58397 1594 aa33.22■■■□□ 2.91
TCF3-219ENST00000610756 KIF27Q86VH2 1401 aa33.17■■■□□ 2.9
TCF3-219ENST00000610756 IGF1RP08069 1367 aa33.15■■■□□ 2.9
TCF3-219ENST00000610756 NUP160Q12769 1436 aa33.14■■■□□ 2.9
TCF3-219ENST00000610756 ARAP1Q96P48 1450 aa33.11■■■□□ 2.89
TCF3-219ENST00000610756 CEP170Q5SW79 1584 aa33.04■■■□□ 2.88
TCF3-219ENST00000610756 JPH4Q96JJ6 628 aa32.91■■■□□ 2.86
TCF3-219ENST00000610756 CARMIL1Q5VZK9 1371 aa32.91■■■□□ 2.86
TCF3-219ENST00000610756 CUL7Q14999 1698 aa32.88■■■□□ 2.85
TCF3-219ENST00000610756 SHROOM2Q13796 1616 aa32.84■■■□□ 2.85
TCF3-219ENST00000610756 ERCC6L2Q5T890 1561 aa32.8■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms