RNA–Protein interactions for RNA: ENST00000609232.5

CTCFL-222, Transcript of CCCTC-binding factor like, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CTCFL, Length 3,668 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFL-222ENST00000609232 NISCHQ9Y2I1 1504 aa20.93■□□□□ 0.94
CTCFL-222ENST00000609232 DCAF8L2P0C7V8 631 aa18.43■□□□□ 0.54
CTCFL-222ENST00000609232 CCDC180Q9P1Z9 1646 aa17.96■□□□□ 0.47
CTCFL-222ENST00000609232 SHROOM4Q9ULL8 1493 aa17.95■□□□□ 0.46
CTCFL-222ENST00000609232 SUPT5HO00267 1087 aaKnown RBP17.63■□□□□ 0.41
CTCFL-222ENST00000609232 ZCCHC6Q5VYS8 1495 aaKnown RBP17.54■□□□□ 0.4
CTCFL-222ENST00000609232 ABCC9O60706 1549 aa17.36■□□□□ 0.37
CTCFL-222ENST00000609232 EHMT2Q96KQ7 1210 aa17.19■□□□□ 0.34
CTCFL-222ENST00000609232 DCAF1Q9Y4B6 1507 aa17.09■□□□□ 0.33
CTCFL-222ENST00000609232 SCRIBQ14160 1630 aa16.88■□□□□ 0.29
CTCFL-222ENST00000609232 NACADO15069 1562 aa16.83■□□□□ 0.29
CTCFL-222ENST00000609232 MYO15BQ96JP2 1530 aa16.79■□□□□ 0.28
CTCFL-222ENST00000609232 RB1CC1Q8TDY2 1594 aa16.72■□□□□ 0.27
CTCFL-222ENST00000609232 FAM9AQ8IZU1 332 aaPredicted RBP16.63■□□□□ 0.25
CTCFL-222ENST00000609232 PABPN1Q86U42 306 aaKnown RBP eCLIP16.57■□□□□ 0.24
CTCFL-222ENST00000609232 TTBK1Q5TCY1 1321 aaPredicted RBP16.39■□□□□ 0.21
CTCFL-222ENST00000609232 CECR2Q9BXF3 1484 aa16.39■□□□□ 0.21
CTCFL-222ENST00000609232 RSF1Q96T23 1441 aaPredicted RBP16.38■□□□□ 0.21
CTCFL-222ENST00000609232 LOC105371045A0A1W2PR82 267 aa16.29■□□□□ 0.2
CTCFL-222ENST00000609232 PPARGC1BQ86YN6 1023 aaKnown RBP16.26■□□□□ 0.19
CTCFL-222ENST00000609232 MROH2BQ7Z745 1585 aa16.25■□□□□ 0.19
CTCFL-222ENST00000609232 CHIC1Q5VXU3 224 aa16.24■□□□□ 0.19
CTCFL-222ENST00000609232 UNC13AQ9UPW8 1703 aa16.23■□□□□ 0.19
CTCFL-222ENST00000609232 RANGAP1P46060 587 aaPredicted RBP16.21■□□□□ 0.19
CTCFL-222ENST00000609232 BAZ1AQ9NRL2 1556 aaPredicted RBP16.15■□□□□ 0.18
CTCFL-222ENST00000609232 BICRAQ9NZM4 1560 aa16.14■□□□□ 0.17
CTCFL-222ENST00000609232 PCGF6Q9BYE7 350 aa16.1■□□□□ 0.17
CTCFL-222ENST00000609232 WIZO95785 1651 aa16.1■□□□□ 0.17
CTCFL-222ENST00000609232 SMARCA4P51532 1647 aa16.03■□□□□ 0.16
CTCFL-222ENST00000609232 TRIM41Q8WV44 630 aa16.01■□□□□ 0.15
CTCFL-222ENST00000609232 TOP2AP11388 1531 aaKnown RBP15.85■□□□□ 0.13
CTCFL-222ENST00000609232 CCDC88BA6NC98 1476 aa15.82■□□□□ 0.12
CTCFL-222ENST00000609232 ATAD2BQ9ULI0 1458 aa15.81■□□□□ 0.12
CTCFL-222ENST00000609232 BAZ1BQ9UIG0 1483 aaKnown RBP15.81■□□□□ 0.12
CTCFL-222ENST00000609232 SMARCA2P51531 1590 aa15.75■□□□□ 0.11
CTCFL-222ENST00000609232 EIF4G1Q04637 1599 aaKnown RBP15.74■□□□□ 0.11
CTCFL-222ENST00000609232 PEG3Q9GZU2 1588 aa15.65■□□□□ 0.1
CTCFL-222ENST00000609232 ABCC8Q09428 1581 aa15.6■□□□□ 0.09
CTCFL-222ENST00000609232 NCAPD3P42695 1498 aa15.59■□□□□ 0.09
CTCFL-222ENST00000609232 UBTFP17480 764 aaKnown RBP15.57■□□□□ 0.08
CTCFL-222ENST00000609232 SLC24A1O60721 1099 aa15.5■□□□□ 0.07
CTCFL-222ENST00000609232 CC2D2AQ9P2K1 1620 aa15.5■□□□□ 0.07
CTCFL-222ENST00000609232 HMGXB3Q12766 1538 aa15.49■□□□□ 0.07
CTCFL-222ENST00000609232 WRNQ14191 1432 aaPredicted RBP eCLIP15.48■□□□□ 0.07
CTCFL-222ENST00000609232 HRCP23327 699 aa15.48■□□□□ 0.07
CTCFL-222ENST00000609232 ATP1B4Q9UN42 357 aaPredicted RBP15.45■□□□□ 0.06
CTCFL-222ENST00000609232 SOGA1O94964 1423 aa15.38■□□□□ 0.05
CTCFL-222ENST00000609232 CSRNP3Q8WYN3 585 aa15.37■□□□□ 0.05
CTCFL-222ENST00000609232 DNAJC5BQ9UF47 199 aa15.34■□□□□ 0.05
CTCFL-222ENST00000609232 CADPSQ9ULU8 1353 aa15.33■□□□□ 0.05
CTCFL-222ENST00000609232 RUSC2Q8N2Y8 1516 aa15.3■□□□□ 0.04
CTCFL-222ENST00000609232 CFTRP13569 1480 aa15.3■□□□□ 0.04
CTCFL-222ENST00000609232 SYNJ1O43426 1573 aa15.29■□□□□ 0.04
CTCFL-222ENST00000609232 ITGAEP38570 1179 aa15.28■□□□□ 0.04
CTCFL-222ENST00000609232 PELP1Q8IZL8 1130 aaKnown RBP15.28■□□□□ 0.04
CTCFL-222ENST00000609232 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.27■□□□□ 0.04
CTCFL-222ENST00000609232 HNRNPUL2Q1KMD3 747 aaKnown RBP15.22■□□□□ 0.03
CTCFL-222ENST00000609232 EEA1Q15075 1411 aa15.22■□□□□ 0.03
CTCFL-222ENST00000609232 NESP48681 1621 aa15.21■□□□□ 0.03
CTCFL-222ENST00000609232 CCER1Q8TC90 406 aaPredicted RBP15.17■□□□□ 0.02
CTCFL-222ENST00000609232 FANCD2Q9BXW9 1451 aa15.17■□□□□ 0.02
CTCFL-222ENST00000609232 CUX1P39880 1505 aa15.15■□□□□ 0.02
CTCFL-222ENST00000609232 TOP2BQ02880 1626 aa15.14■□□□□ 0.01
CTCFL-222ENST00000609232 ARID3CA6NKF2 412 aa15.13■□□□□ 0.01
CTCFL-222ENST00000609232 P3H3Q8IVL6 736 aa15.13■□□□□ 0.01
CTCFL-222ENST00000609232 APLP2Q06481 763 aa15.11■□□□□ 0.01
CTCFL-222ENST00000609232 GOLGA3Q08378 1498 aa15.11■□□□□ 0.01
CTCFL-222ENST00000609232 KIF27Q86VH2 1401 aa15.09■□□□□ 0.01
CTCFL-222ENST00000609232 TRIM26Q12899 539 aaPredicted RBP15.08■□□□□ 0
CTCFL-222ENST00000609232 CEP164Q9UPV0 1460 aa15.08■□□□□ 0
CTCFL-222ENST00000609232 TNIKQ9UKE5 1360 aa15.08■□□□□ 0
CTCFL-222ENST00000609232 CEP162Q5TB80 1403 aa15.07■□□□□ 0
CTCFL-222ENST00000609232 PDS5BQ9NTI5 1447 aa15.06■□□□□ 0
CTCFL-222ENST00000609232 CUX2O14529 1486 aa15.06■□□□□ 0
CTCFL-222ENST00000609232 BIVM-ERCC5R4GMW8 1640 aa15.05■□□□□ -0
CTCFL-222ENST00000609232 FGD5Q6ZNL6 1462 aa15.04■□□□□ -0
CTCFL-222ENST00000609232 RAPGEF2Q9Y4G8 1499 aa15.02■□□□□ -0
CTCFL-222ENST00000609232 LAMC3Q9Y6N6 1575 aa15□□□□□ -0.01
CTCFL-222ENST00000609232 RAD54L2Q9Y4B4 1467 aa14.98□□□□□ -0.01
CTCFL-222ENST00000609232 PRDM2Q13029 1718 aa14.98□□□□□ -0.01
CTCFL-222ENST00000609232 CLIP1P30622 1438 aa14.96□□□□□ -0.01
CTCFL-222ENST00000609232 TOPBP1Q92547 1522 aa14.96□□□□□ -0.01
CTCFL-222ENST00000609232 YTHDC1Q96MU7 727 aaKnown RBP14.93□□□□□ -0.02
CTCFL-222ENST00000609232 TDRD9Q8NDG6 1382 aaKnown RBP14.93□□□□□ -0.02
CTCFL-222ENST00000609232 DNMBPQ6XZF7 1577 aa14.92□□□□□ -0.02
CTCFL-222ENST00000609232 POLA1P09884 1462 aaPredicted RBP14.92□□□□□ -0.02
CTCFL-222ENST00000609232 IGF1RP08069 1367 aa14.92□□□□□ -0.02
CTCFL-222ENST00000609232 CARMIL1Q5VZK9 1371 aa14.92□□□□□ -0.02
CTCFL-222ENST00000609232 KIF21BO75037 1637 aa14.92□□□□□ -0.02
CTCFL-222ENST00000609232 ERCC6Q03468 1493 aa14.9□□□□□ -0.02
CTCFL-222ENST00000609232 URB2Q14146 1524 aaKnown RBP14.9□□□□□ -0.02
CTCFL-222ENST00000609232 MYT1Q01538 1121 aa14.88□□□□□ -0.03
CTCFL-222ENST00000609232 PRXQ9BXM0 1461 aa14.88□□□□□ -0.03
CTCFL-222ENST00000609232 CNGB1Q14028 1251 aaPredicted RBP14.86□□□□□ -0.03
CTCFL-222ENST00000609232 FBLN2P98095 1184 aa14.86□□□□□ -0.03
CTCFL-222ENST00000609232 KIF21AQ7Z4S6 1674 aa14.84□□□□□ -0.03
CTCFL-222ENST00000609232 ERICH3Q5RHP9 1530 aa14.8□□□□□ -0.04
CTCFL-222ENST00000609232 ABCA10Q8WWZ4 1543 aa14.8□□□□□ -0.04
CTCFL-222ENST00000609232 MRC2Q9UBG0 1479 aa14.79□□□□□ -0.04
CTCFL-222ENST00000609232 GAPVD1Q14C86 1478 aa14.76□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms