RNA–Protein interactions for RNA: ENST00000607045.5

TMEM248-207, Transcript of transmembrane protein 248, humanhuman

TSL 3

Gene TMEM248, Length 690 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM248-207ENST00000607045 NISCHQ9Y2I1 1504 aa54.49■■■■■ 6.31
TMEM248-207ENST00000607045 ABCC9O60706 1549 aa48.89■■■■■ 5.42
TMEM248-207ENST00000607045 CCDC180Q9P1Z9 1646 aa48.65■■■■■ 5.38
TMEM248-207ENST00000607045 RB1CC1Q8TDY2 1594 aa46.39■■■■■ 5.02
TMEM248-207ENST00000607045 DCAF8L2P0C7V8 631 aa46.28■■■■■ 5
TMEM248-207ENST00000607045 NACADO15069 1562 aa46.1■■■■■ 4.97
TMEM248-207ENST00000607045 DNAJC5BQ9UF47 199 aa46.02■■■■■ 4.96
TMEM248-207ENST00000607045 PABPN1Q86U42 306 aaKnown RBP eCLIP45.7■■■■■ 4.91
TMEM248-207ENST00000607045 MYO15BQ96JP2 1530 aa45.47■■■■■ 4.87
TMEM248-207ENST00000607045 UNC13AQ9UPW8 1703 aa45.28■■■■■ 4.84
TMEM248-207ENST00000607045 ZCCHC6Q5VYS8 1495 aaKnown RBP45.12■■■■■ 4.81
TMEM248-207ENST00000607045 BICRAQ9NZM4 1560 aa45.11■■■■■ 4.81
TMEM248-207ENST00000607045 DCAF1Q9Y4B6 1507 aa44.92■■■■■ 4.78
TMEM248-207ENST00000607045 SCRIBQ14160 1630 aa44.5■■■■■ 4.71
TMEM248-207ENST00000607045 SHROOM4Q9ULL8 1493 aa44.34■■■■■ 4.69
TMEM248-207ENST00000607045 CC2D2AQ9P2K1 1620 aa44.06■■■■■ 4.64
TMEM248-207ENST00000607045 CECR2Q9BXF3 1484 aa43.99■■■■■ 4.63
TMEM248-207ENST00000607045 EIF4G1Q04637 1599 aaKnown RBP43.97■■■■■ 4.63
TMEM248-207ENST00000607045 NCAPD3P42695 1498 aa42.67■■■■■ 4.42
TMEM248-207ENST00000607045 ATAD2BQ9ULI0 1458 aa42.56■■■■■ 4.4
TMEM248-207ENST00000607045 SMARCA4P51532 1647 aa42.42■■■■■ 4.38
TMEM248-207ENST00000607045 SMARCA2P51531 1590 aa42.32■■■■■ 4.37
TMEM248-207ENST00000607045 BAZ1AQ9NRL2 1556 aaPredicted RBP42.22■■■■■ 4.35
TMEM248-207ENST00000607045 HMGXB3Q12766 1538 aa42.21■■■■■ 4.35
TMEM248-207ENST00000607045 ERCC6Q03468 1493 aa42.13■■■■■ 4.34
TMEM248-207ENST00000607045 DNAJC5Q9H3Z4 198 aa42.11■■■■■ 4.33
TMEM248-207ENST00000607045 BAZ1BQ9UIG0 1483 aaKnown RBP42.1■■■■■ 4.33
TMEM248-207ENST00000607045 MROH2BQ7Z745 1585 aa42.04■■■■■ 4.32
TMEM248-207ENST00000607045 NESP48681 1621 aa42.03■■■■■ 4.32
TMEM248-207ENST00000607045 PEG3Q9GZU2 1588 aa41.98■■■■■ 4.31
TMEM248-207ENST00000607045 CUX2O14529 1486 aa41.97■■■■■ 4.31
TMEM248-207ENST00000607045 LAMC3Q9Y6N6 1575 aa41.57■■■■■ 4.25
TMEM248-207ENST00000607045 WIZO95785 1651 aa41.49■■■■■ 4.23
TMEM248-207ENST00000607045 PDS5BQ9NTI5 1447 aa41.44■■■■■ 4.23
TMEM248-207ENST00000607045 CADPSQ9ULU8 1353 aa41.43■■■■■ 4.22
TMEM248-207ENST00000607045 THOC2Q8NI27 1593 aaKnown RBP41.4■■■■■ 4.22
TMEM248-207ENST00000607045 KIF21AQ7Z4S6 1674 aa41.3■■■■■ 4.2
TMEM248-207ENST00000607045 RSF1Q96T23 1441 aaPredicted RBP41.24■■■■■ 4.19
TMEM248-207ENST00000607045 MRC2Q9UBG0 1479 aa41.03■■■■■ 4.16
TMEM248-207ENST00000607045 CFTRP13569 1480 aa40.91■■■■■ 4.14
TMEM248-207ENST00000607045 TOP2AP11388 1531 aaKnown RBP40.91■■■■■ 4.14
TMEM248-207ENST00000607045 FANCD2Q9BXW9 1451 aa40.9■■■■■ 4.14
TMEM248-207ENST00000607045 WDR62O43379 1518 aa40.88■■■■■ 4.14
TMEM248-207ENST00000607045 CEP164Q9UPV0 1460 aa40.88■■■■■ 4.13
TMEM248-207ENST00000607045 CCDC88BA6NC98 1476 aa40.6■■■■■ 4.09
TMEM248-207ENST00000607045 URB2Q14146 1524 aaKnown RBP40.57■■■■■ 4.08
TMEM248-207ENST00000607045 TRIM41Q8WV44 630 aa40.33■■■■■ 4.05
TMEM248-207ENST00000607045 OSCARQ8IYS5 282 aa40.29■■■■■ 4.04
TMEM248-207ENST00000607045 PRDM2Q13029 1718 aa40.21■■■■■ 4.03
TMEM248-207ENST00000607045 TOPBP1Q92547 1522 aa40.11■■■■■ 4.01
TMEM248-207ENST00000607045 ZNF608Q9ULD9 1512 aaPredicted RBP40.11■■■■■ 4.01
TMEM248-207ENST00000607045 IFT140Q96RY7 1462 aa40.08■■■■■ 4.01
TMEM248-207ENST00000607045 ABCC8Q09428 1581 aa39.98■■■■□ 3.99
TMEM248-207ENST00000607045 DNMBPQ6XZF7 1577 aa39.89■■■■□ 3.98
TMEM248-207ENST00000607045 AQRO60306 1485 aaKnown RBP eCLIP39.81■■■■□ 3.964e-6■■□□□ 13.1
TMEM248-207ENST00000607045 POLA1P09884 1462 aaPredicted RBP39.72■■■■□ 3.95
TMEM248-207ENST00000607045 TARBP1Q13395 1621 aaKnown RBP39.71■■■■□ 3.95
TMEM248-207ENST00000607045 EIF4G3O43432 1585 aaKnown RBP39.71■■■■□ 3.95
TMEM248-207ENST00000607045 RAD54L2Q9Y4B4 1467 aa39.67■■■■□ 3.94
TMEM248-207ENST00000607045 SUPT5HO00267 1087 aaKnown RBP39.65■■■■□ 3.94
TMEM248-207ENST00000607045 SOGA1O94964 1423 aa39.63■■■■□ 3.93
TMEM248-207ENST00000607045 FBLN2P98095 1184 aa39.6■■■■□ 3.93
TMEM248-207ENST00000607045 TDRD9Q8NDG6 1382 aaKnown RBP39.59■■■■□ 3.93
TMEM248-207ENST00000607045 RIMBP3CA6NJZ7 1639 aa39.55■■■■□ 3.92
TMEM248-207ENST00000607045 RIMBP3BA6NNM3 1639 aa39.55■■■■□ 3.92
TMEM248-207ENST00000607045 RIMBP3Q9UFD9 1639 aa39.55■■■■□ 3.92
TMEM248-207ENST00000607045 FGD5Q6ZNL6 1462 aa39.49■■■■□ 3.91
TMEM248-207ENST00000607045 ARHGEF11O15085 1522 aa39.47■■■■□ 3.91
TMEM248-207ENST00000607045 CUX1P39880 1505 aa39.46■■■■□ 3.91
TMEM248-207ENST00000607045 CYB5RLQ6IPT4 315 aa39.4■■■■□ 3.9
TMEM248-207ENST00000607045 CHD1O14646 1710 aa39.38■■■■□ 3.89
TMEM248-207ENST00000607045 CHMP7Q8WUX9 453 aaPredicted RBP39.28■■■■□ 3.88
TMEM248-207ENST00000607045 SNAPC4Q5SXM2 1469 aa39.28■■■■□ 3.88
TMEM248-207ENST00000607045 GRIN2BQ13224 1484 aa39.18■■■■□ 3.86
TMEM248-207ENST00000607045 WDR97A6NE52 1622 aa39.16■■■■□ 3.86
TMEM248-207ENST00000607045 ARAP1Q96P48 1450 aa39.11■■■■□ 3.85
TMEM248-207ENST00000607045 MAGI1Q96QZ7 1491 aaPredicted RBP39.11■■■■□ 3.85
TMEM248-207ENST00000607045 GAPVD1Q14C86 1478 aa39.08■■■■□ 3.85
TMEM248-207ENST00000607045 SYNJ2O15056 1496 aa39.03■■■■□ 3.84
TMEM248-207ENST00000607045 ABCA10Q8WWZ4 1543 aa39.02■■■■□ 3.84
TMEM248-207ENST00000607045 CLASP1Q7Z460 1538 aa38.99■■■■□ 3.83
TMEM248-207ENST00000607045 SYNJ1O43426 1573 aa38.95■■■■□ 3.83
TMEM248-207ENST00000607045 WRNQ14191 1432 aaPredicted RBP eCLIP38.92■■■■□ 3.82
TMEM248-207ENST00000607045 TRHP20396 242 aaPredicted RBP38.91■■■■□ 3.82
TMEM248-207ENST00000607045 PBRM1Q86U86 1689 aa38.87■■■■□ 3.81
TMEM248-207ENST00000607045 ABCA5Q8WWZ7 1642 aa38.86■■■■□ 3.81
TMEM248-207ENST00000607045 TOP2BQ02880 1626 aa38.77■■■■□ 3.8
TMEM248-207ENST00000607045 BIVM-ERCC5R4GMW8 1640 aa38.71■■■■□ 3.79
TMEM248-207ENST00000607045 GRIN2AQ12879 1464 aa38.66■■■■□ 3.78
TMEM248-207ENST00000607045 FHAD1B1AJZ9 1412 aa38.58■■■■□ 3.77
TMEM248-207ENST00000607045 ADAMTS12P58397 1594 aa38.57■■■■□ 3.76
TMEM248-207ENST00000607045 NUP160Q12769 1436 aa38.55■■■■□ 3.76
TMEM248-207ENST00000607045 CEP170Q5SW79 1584 aa38.51■■■■□ 3.76
TMEM248-207ENST00000607045 ERCC6L2Q5T890 1561 aa38.5■■■■□ 3.75
TMEM248-207ENST00000607045 ERICH3Q5RHP9 1530 aa38.48■■■■□ 3.75
TMEM248-207ENST00000607045 JPH4Q96JJ6 628 aa38.33■■■■□ 3.73
TMEM248-207ENST00000607045 SHROOM2Q13796 1616 aa38.27■■■■□ 3.72
TMEM248-207ENST00000607045 PRG4Q92954 1404 aaPredicted RBP38.24■■■■□ 3.71
TMEM248-207ENST00000607045 IGF1RP08069 1367 aa38.22■■■■□ 3.71
TMEM248-207ENST00000607045 KIF27Q86VH2 1401 aa38.12■■■■□ 3.69
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms