RNA–Protein interactions for RNA: ENST00000606690.5

NECAB3-219, Transcript of N-terminal EF-hand calcium binding protein 3, humanhuman

TSL 5

Gene NECAB3, Length 900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAB3-219ENST00000606690 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.42□□□□□ -0.262e-6■■■■■ 163.7
NECAB3-219ENST00000606690 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.17■□□□□ 0.021e-6■■■■■ 137.9
NECAB3-219ENST00000606690 SF3B1O75533 1304 aaKnown RBP eCLIP15.88■□□□□ 0.136e-6■■■■■ 96.6
NECAB3-219ENST00000606690 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.81□□□□□ -0.364e-7■■■■■ 58.1
NECAB3-219ENST00000606690 PUS1Q9Y606 427 aaKnown RBP eCLIP10.56□□□□□ -0.721e-5■■■■■ 49.7
NECAB3-219ENST00000606690 WRNQ14191 1432 aaPredicted RBP eCLIP25.57■■□□□ 1.686e-7■■■■■ 33.4
NECAB3-219ENST00000606690 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.03■□□□□ 0.325e-7■■■■■ 32
NECAB3-219ENST00000606690 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.45■■□□□ 1.185e-7■■■■■ 29.7
NECAB3-219ENST00000606690 AARSP49588 968 aaKnown RBP eCLIP15.59■□□□□ 0.093e-7■■■■■ 29.5
NECAB3-219ENST00000606690 AQRO60306 1485 aaKnown RBP eCLIP26.02■■□□□ 1.762e-7■■■■■ 29.3
NECAB3-219ENST00000606690 FKBP4Q02790 459 aaKnown RBP eCLIP18.88■□□□□ 0.611e-6■■■■■ 28.9
NECAB3-219ENST00000606690 SF3B4Q15427 424 aaKnown RBP eCLIP13.21□□□□□ -0.293e-7■■■■□ 26.5
NECAB3-219ENST00000606690 DDX6P26196 483 aaKnown RBP eCLIP15.47■□□□□ 0.072e-6■■■■□ 26
NECAB3-219ENST00000606690 GTF2F1P35269 517 aaKnown RBP eCLIP16.22■□□□□ 0.198e-7■■■■□ 24.7
NECAB3-219ENST00000606690 NONOQ15233 471 aaKnown RBP eCLIP16.16■□□□□ 0.186e-7■■■■□ 23.9
NECAB3-219ENST00000606690 AATFQ9NY61 560 aaKnown RBP eCLIP17.59■□□□□ 0.412e-8■■■■□ 22.6
NECAB3-219ENST00000606690 EIF4G2P78344 907 aaKnown RBP eCLIP19.8■□□□□ 0.762e-6■■■■□ 22.4
NECAB3-219ENST00000606690 TARDBPQ13148 414 aaKnown RBP eCLIP14.68□□□□□ -0.062e-6■■■■□ 22.1
NECAB3-219ENST00000606690 PCBP1Q15365 356 aaKnown RBP eCLIP16.02■□□□□ 0.164e-7■■■■□ 21.8
NECAB3-219ENST00000606690 LSM11P83369 360 aaKnown RBP eCLIP12.54□□□□□ -0.45e-7■■■■□ 21.6
NECAB3-219ENST00000606690 EFTUD2Q15029 972 aaKnown RBP eCLIP13.38□□□□□ -0.274e-8■■■■□ 21
NECAB3-219ENST00000606690 HNRNPKP61978 463 aaKnown RBP eCLIP14.64□□□□□ -0.074e-7■■■■□ 20.9
NECAB3-219ENST00000606690 SFPQP23246 707 aaKnown RBP eCLIP16.15■□□□□ 0.181e-6■■■■□ 20.9
NECAB3-219ENST00000606690 PPIGQ13427 754 aaKnown RBP eCLIP16.92■□□□□ 0.31e-9■■■■□ 20.5
NECAB3-219ENST00000606690 RBFOX2O43251 390 aaKnown RBP eCLIP10.8□□□□□ -0.682e-9■■■■□ 19.7
NECAB3-219ENST00000606690 SRSF9Q13242 221 aaKnown RBP eCLIP8.89□□□□□ -0.997e-7■■■■□ 19.4
NECAB3-219ENST00000606690 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.64■■□□□ 1.372e-6■■■□□ 19
NECAB3-219ENST00000606690 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.65□□□□□ -0.227e-7■■■□□ 18.7
NECAB3-219ENST00000606690 FUSP35637 526 aaKnown RBP eCLIP9.74□□□□□ -0.851e-6■■■□□ 18.5
NECAB3-219ENST00000606690 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.37■□□□□ 0.378e-7■■■□□ 18.3
NECAB3-219ENST00000606690 DDX3XO00571 662 aaKnown RBP eCLIP14.37□□□□□ -0.112e-10■■■□□ 18.2
NECAB3-219ENST00000606690 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.58□□□□□ -0.45e-7■■■□□ 17.2
NECAB3-219ENST00000606690 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.1□□□□□ -0.319e-7■■■□□ 17.2
NECAB3-219ENST00000606690 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.77□□□□□ -0.372e-7■■■□□ 17.1
NECAB3-219ENST00000606690 HNRNPMP52272 730 aaKnown RBP eCLIP23.04■■□□□ 1.285e-11■■■□□ 16.7
NECAB3-219ENST00000606690 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.86□□□□□ -0.032e-7■■■□□ 16.5
NECAB3-219ENST00000606690 EWSR1Q01844 656 aaKnown RBP eCLIP10.61□□□□□ -0.711e-6■■■□□ 16.2
NECAB3-219ENST00000606690 PCBP2Q15366 365 aaKnown RBP eCLIP13.21□□□□□ -0.291e-7■■■□□ 15.6
NECAB3-219ENST00000606690 PTBP1P26599 531 aaKnown RBP eCLIP10.76□□□□□ -0.693e-6■■■□□ 15.5
NECAB3-219ENST00000606690 NCBP2P52298 156 aaKnown RBP eCLIP13.01□□□□□ -0.333e-11■■■□□ 15.5
NECAB3-219ENST00000606690 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.25□□□□□ -0.452e-7■■■□□ 15.4
NECAB3-219ENST00000606690 RBM5P52756 815 aaKnown RBP eCLIP18.11■□□□□ 0.499e-7■■■□□ 15.3
NECAB3-219ENST00000606690 PRPF4O43172 522 aaKnown RBP eCLIP13.73□□□□□ -0.211e-6■■■□□ 14.9
NECAB3-219ENST00000606690 SF3A3Q12874 501 aaKnown RBP eCLIP12.14□□□□□ -0.476e-7■■■□□ 14.8
NECAB3-219ENST00000606690 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.41□□□□□ -0.11e-6■■□□□ 14.2
NECAB3-219ENST00000606690 ZNF622Q969S3 477 aaKnown RBP eCLIP19.1■□□□□ 0.651e-6■■□□□ 14.2
NECAB3-219ENST00000606690 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.84■□□□□ 0.137e-9■■□□□ 13.9
NECAB3-219ENST00000606690 TIA1P31483 386 aaKnown RBP eCLIP13.03□□□□□ -0.321e-6■■□□□ 13.8
NECAB3-219ENST00000606690 CDC40O60508 579 aaKnown RBP eCLIP13.41□□□□□ -0.266e-7■■□□□ 13.7
NECAB3-219ENST00000606690 NKRFO15226 690 aaKnown RBP eCLIP16.83■□□□□ 0.284e-7■■□□□ 13
NECAB3-219ENST00000606690 SRSF1Q07955 248 aaKnown RBP eCLIP13.97□□□□□ -0.171e-10■■□□□ 12.8
NECAB3-219ENST00000606690 U2AF1Q01081 240 aaKnown RBP eCLIP19.19■□□□□ 0.662e-6■■□□□ 12.5
NECAB3-219ENST00000606690 SMNDC1O75940 238 aaKnown RBP eCLIP13.01□□□□□ -0.334e-6■■□□□ 12.4
NECAB3-219ENST00000606690 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.99■□□□□ 0.312e-6■■□□□ 12.1
NECAB3-219ENST00000606690 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.45■□□□□ 0.381e-6■■□□□ 11.7
NECAB3-219ENST00000606690 PABPN1Q86U42 306 aaKnown RBP eCLIP29.82■■■□□ 2.368e-9■■□□□ 11.7
NECAB3-219ENST00000606690 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.87■□□□□ 0.297e-7■■□□□ 11.6
NECAB3-219ENST00000606690 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.34■■□□□ 1.172e-7■■□□□ 11.4
NECAB3-219ENST00000606690 U2AF2P26368 475 aaKnown RBP eCLIP15.77■□□□□ 0.125e-10■□□□□ 11.1
NECAB3-219ENST00000606690 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.65■□□□□ 0.421e-8■□□□□ 10.8
NECAB3-219ENST00000606690 GPKOWQ92917 476 aaPredicted RBP eCLIP16.55■□□□□ 0.244e-6■□□□□ 10.4
NECAB3-219ENST00000606690 SRSF7Q16629 238 aaKnown RBP eCLIP11.07□□□□□ -0.648e-10■□□□□ 9.8
NECAB3-219ENST00000606690 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.34■□□□□ 0.853e-6■□□□□ 9.1
NECAB3-219ENST00000606690 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.23□□□□□ -0.133e-7■□□□□ 8.6
NECAB3-219ENST00000606690 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.73□□□□□ -0.536e-8■□□□□ 8.3
NECAB3-219ENST00000606690 TAF15Q92804 592 aaKnown RBP eCLIP11.92□□□□□ -0.55e-6■□□□□ 8.2
NECAB3-219ENST00000606690 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.9■□□□□ 0.469e-11■□□□□ 8.1
Retrieved 67 of 67 RNA–protein pairs in 83.2 ms