RNA–Protein interactions for RNA: ENST00000605204.1

SRSF4-206, Transcript of serine and arginine rich splicing factor 4, humanhuman

TSL 1 (best)

Gene SRSF4, Length 1,399 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF4-206ENST00000605204 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.56■■□□□ 1.24e-38■■□□□ 14.4
SRSF4-206ENST00000605204 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.96■□□□□ 0.477e-24■□□□□ 10.9
SRSF4-206ENST00000605204 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.52■■■□□ 2.322e-23■□□□□ 10.7
SRSF4-206ENST00000605204 GTF2F1P35269 517 aaKnown RBP eCLIP20.98■□□□□ 0.954e-17■■□□□ 13.5
SRSF4-206ENST00000605204 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.8■■□□□ 1.247e-16■■□□□ 12.1
SRSF4-206ENST00000605204 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.82■□□□□ 0.441e-15■□□□□ 8.6
SRSF4-206ENST00000605204 DDX3XO00571 662 aaKnown RBP eCLIP19.75■□□□□ 0.758e-15■■■□□ 17.7
SRSF4-206ENST00000605204 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.93■□□□□ 0.784e-14■□□□□ 9.8
SRSF4-206ENST00000605204 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.16■□□□□ 0.186e-14■□□□□ 8.6
SRSF4-206ENST00000605204 KHSRPQ92945 711 aaKnown RBP eCLIP21.23■□□□□ 0.992e-13■■■■□ 23.7
SRSF4-206ENST00000605204 RBM15Q96T37 977 aaKnown RBP eCLIP19.19■□□□□ 0.662e-13■■□□□ 13.3
SRSF4-206ENST00000605204 EWSR1Q01844 656 aaKnown RBP eCLIP14.03□□□□□ -0.163e-13■□□□□ 10.7
SRSF4-206ENST00000605204 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.67■□□□□ 0.587e-13■■■■■ 35.4
SRSF4-206ENST00000605204 TIA1P31483 386 aaKnown RBP eCLIP17.84■□□□□ 0.451e-12■■■■□ 23.2
SRSF4-206ENST00000605204 U2AF2P26368 475 aaKnown RBP eCLIP21.57■■□□□ 1.045e-12■■■□□ 15.3
SRSF4-206ENST00000605204 DDX6P26196 483 aaKnown RBP eCLIP20.48■□□□□ 0.876e-12■□□□□ 8
SRSF4-206ENST00000605204 SF3B4Q15427 424 aaKnown RBP eCLIP17.54■□□□□ 0.41e-11■■■■□ 21.4
SRSF4-206ENST00000605204 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.53■□□□□ 0.41e-11■■■■■ 73.9
SRSF4-206ENST00000605204 PCBP2Q15366 365 aaKnown RBP eCLIP18.16■□□□□ 0.52e-11■■■□□ 14.6
SRSF4-206ENST00000605204 EFTUD2Q15029 972 aaKnown RBP eCLIP18.29■□□□□ 0.524e-11■■■■■ 30.3
SRSF4-206ENST00000605204 PUM1Q14671 1186 aaKnown RBP eCLIP19.95■□□□□ 0.798e-11■□□□□ 10.5
SRSF4-206ENST00000605204 SMNDC1O75940 238 aaKnown RBP eCLIP17.2■□□□□ 0.341e-10■□□□□ 8.8
SRSF4-206ENST00000605204 AARSP49588 968 aaKnown RBP eCLIP20.83■□□□□ 0.925e-10■■■■■ 34.9
SRSF4-206ENST00000605204 RBM22Q9NW64 420 aaKnown RBP eCLIP19.33■□□□□ 0.698e-10■■■■□ 20.9
SRSF4-206ENST00000605204 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.82■□□□□ 0.763e-9■■■□□ 14.9
SRSF4-206ENST00000605204 HNRNPMP52272 730 aaKnown RBP eCLIP30.09■■■□□ 2.413e-9■■■■□ 23.4
SRSF4-206ENST00000605204 SRSF1Q07955 248 aaKnown RBP eCLIP18.17■□□□□ 0.54e-9■□□□□ 8.5
SRSF4-206ENST00000605204 U2AF1Q01081 240 aaKnown RBP eCLIP25.67■■□□□ 1.75e-9■■□□□ 13.5
SRSF4-206ENST00000605204 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.16■□□□□ 0.183e-8■■■□□ 14.7
SRSF4-206ENST00000605204 FMR1Q06787 632 aaKnown RBP eCLIP24.06■■□□□ 1.444e-8■□□□□ 10.3
SRSF4-206ENST00000605204 SAFB2Q14151 953 aaKnown RBP eCLIP27.57■■■□□ 24e-8■□□□□ 11.1
SRSF4-206ENST00000605204 RPS11P62280 158 aaKnown RBP eCLIP15.72■□□□□ 0.117e-8■■□□□ 13.7
SRSF4-206ENST00000605204 NCBP2P52298 156 aaKnown RBP eCLIP17.68■□□□□ 0.429e-8■□□□□ 8.4
SRSF4-206ENST00000605204 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.83■■■□□ 2.539e-8■■□□□ 12.5
SRSF4-206ENST00000605204 AQRO60306 1485 aaKnown RBP eCLIP33.91■■■■□ 3.021e-7■■□□□ 13.3
SRSF4-206ENST00000605204 CDC40O60508 579 aaKnown RBP eCLIP17.64■□□□□ 0.411e-7■■■□□ 16.2
SRSF4-206ENST00000605204 NONOQ15233 471 aaKnown RBP eCLIP21.81■■□□□ 1.081e-7■■□□□ 13.7
SRSF4-206ENST00000605204 HNRNPLP14866 589 aaKnown RBP eCLIP19.95■□□□□ 0.781e-7■□□□□ 9.4
SRSF4-206ENST00000605204 FUSP35637 526 aaKnown RBP eCLIP12.67□□□□□ -0.381e-7■□□□□ 11.3
SRSF4-206ENST00000605204 PRPF4O43172 522 aaKnown RBP eCLIP18.37■□□□□ 0.531e-7■■□□□ 14.2
SRSF4-206ENST00000605204 SAFBQ15424 915 aaKnown RBP eCLIP21.73■■□□□ 1.072e-7■■□□□ 11.7
SRSF4-206ENST00000605204 WDR3Q9UNX4 943 aaKnown RBP eCLIP20.23■□□□□ 0.832e-7■□□□□ 9.2
SRSF4-206ENST00000605204 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.5■■□□□ 1.033e-7■■■□□ 16.8
SRSF4-206ENST00000605204 HLTFQ14527 1009 aaKnown RBP eCLIP19.03■□□□□ 0.643e-7■□□□□ 8.3
SRSF4-206ENST00000605204 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.37■□□□□ 0.854e-7■■■■■ 67.7
SRSF4-206ENST00000605204 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.21■■■□□ 2.274e-7■□□□□ 11.3
SRSF4-206ENST00000605204 HNRNPA1P09651 372 aaKnown RBP eCLIP20.79■□□□□ 0.925e-7■□□□□ 8.4
SRSF4-206ENST00000605204 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.79■■□□□ 1.087e-7■■□□□ 11.5
SRSF4-206ENST00000605204 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.07■■□□□ 1.768e-7■□□□□ 11
SRSF4-206ENST00000605204 ILF3Q12906 894 aaKnown RBP eCLIP19.11■□□□□ 0.659e-7■■■□□ 18.7
SRSF4-206ENST00000605204 TIAL1Q01085 375 aaKnown RBP eCLIP18.45■□□□□ 0.549e-7■■■■□ 23.8
SRSF4-206ENST00000605204 ZNF622Q969S3 477 aaKnown RBP eCLIP24.74■■□□□ 1.551e-6■□□□□ 11
SRSF4-206ENST00000605204 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP18.23■□□□□ 0.511e-6■■■■■ 43.6
SRSF4-206ENST00000605204 PPIGQ13427 754 aaKnown RBP eCLIP21.91■■□□□ 1.11e-6■■□□□ 13.3
SRSF4-206ENST00000605204 SF3B1O75533 1304 aaKnown RBP eCLIP21■□□□□ 0.951e-6■■■■□ 22.6
SRSF4-206ENST00000605204 FXR2P51116 673 aaKnown RBP eCLIP21.47■■□□□ 1.031e-6■■□□□ 14.2
SRSF4-206ENST00000605204 NIPBLQ6KC79 2804 aaeCLIP16.9■□□□□ 0.31e-6■□□□□ 10.1
SRSF4-206ENST00000605204 SRSF9Q13242 221 aaKnown RBP eCLIP11.85□□□□□ -0.512e-6■■■□□ 17.4
SRSF4-206ENST00000605204 GPKOWQ92917 476 aaPredicted RBP eCLIP22.06■■□□□ 1.122e-6■■■□□ 14.6
SRSF4-206ENST00000605204 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.9■■□□□ 1.12e-6■□□□□ 8.1
SRSF4-206ENST00000605204 ZRANB2O95218 330 aaKnown RBP eCLIP19.34■□□□□ 0.692e-6■■■■■ 50.4
SRSF4-206ENST00000605204 TAF15Q92804 592 aaKnown RBP eCLIP15.48■□□□□ 0.073e-6■□□□□ 8.7
SRSF4-206ENST00000605204 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.92■□□□□ 0.463e-6■■■□□ 15
SRSF4-206ENST00000605204 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.46■■□□□ 1.354e-6■■□□□ 13.4
SRSF4-206ENST00000605204 SF3A3Q12874 501 aaKnown RBP eCLIP17.06■□□□□ 0.324e-6■■□□□ 11.7
SRSF4-206ENST00000605204 SRSF7Q16629 238 aaKnown RBP eCLIP15.3■□□□□ 0.045e-6■□□□□ 8.4
SRSF4-206ENST00000605204 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP18.17■□□□□ 0.56e-6■■■■■ 27.3
SRSF4-206ENST00000605204 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.94■□□□□ 0.787e-6■□□□□ 8.6
Retrieved 68 of 68 RNA–protein pairs in 10.6 ms