RNA–Protein interactions for RNA: ENST00000604599.1

CDCA3-212, Transcript of cell division cycle associated 3, humanhuman

TSL 2

Gene CDCA3, Length 2,917 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-212ENST00000604599 NISCHQ9Y2I1 1504 aa23.55■■□□□ 1.36
CDCA3-212ENST00000604599 HRCP23327 699 aa21.07■□□□□ 0.96
CDCA3-212ENST00000604599 SHROOM4Q9ULL8 1493 aa20.98■□□□□ 0.95
CDCA3-212ENST00000604599 SUPT5HO00267 1087 aaKnown RBP20.88■□□□□ 0.93
CDCA3-212ENST00000604599 PPARGC1BQ86YN6 1023 aaKnown RBP20.71■□□□□ 0.91
CDCA3-212ENST00000604599 PCGF6Q9BYE7 350 aa20.71■□□□□ 0.91
CDCA3-212ENST00000604599 MYO15BQ96JP2 1530 aa20.66■□□□□ 0.9
CDCA3-212ENST00000604599 CHIC1Q5VXU3 224 aa20.47■□□□□ 0.87
CDCA3-212ENST00000604599 PELP1Q8IZL8 1130 aaKnown RBP20.23■□□□□ 0.83
CDCA3-212ENST00000604599 DCAF1Q9Y4B6 1507 aa20.14■□□□□ 0.81
CDCA3-212ENST00000604599 LOC105371045A0A1W2PR82 267 aa20.05■□□□□ 0.8
CDCA3-212ENST00000604599 ZCCHC6Q5VYS8 1495 aaKnown RBP20.05■□□□□ 0.8
CDCA3-212ENST00000604599 TRIM26Q12899 539 aaPredicted RBP19.98■□□□□ 0.79
CDCA3-212ENST00000604599 SCAF1Q9H7N4 1312 aaKnown RBP19.95■□□□□ 0.78
CDCA3-212ENST00000604599 CCDC180Q9P1Z9 1646 aa19.92■□□□□ 0.78
CDCA3-212ENST00000604599 ZEB1P37275 1124 aaPredicted RBP19.77■□□□□ 0.76
CDCA3-212ENST00000604599 DCAF8L2P0C7V8 631 aa19.73■□□□□ 0.75
CDCA3-212ENST00000604599 ACIN1Q9UKV3 1341 aaKnown RBP19.44■□□□□ 0.7
CDCA3-212ENST00000604599 NEUROD1Q13562 356 aa19.42■□□□□ 0.7
CDCA3-212ENST00000604599 MYT1Q01538 1121 aa19.39■□□□□ 0.7
CDCA3-212ENST00000604599 FAM9AQ8IZU1 332 aaPredicted RBP19.33■□□□□ 0.68
CDCA3-212ENST00000604599 GTF3C3Q9Y5Q9 886 aa19.32■□□□□ 0.68
CDCA3-212ENST00000604599 EHMT2Q96KQ7 1210 aa19.3■□□□□ 0.68
CDCA3-212ENST00000604599 TRIM41Q8WV44 630 aa19.26■□□□□ 0.67
CDCA3-212ENST00000604599 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.21■□□□□ 0.67
CDCA3-212ENST00000604599 CENPBP07199 599 aaPredicted RBP19.2■□□□□ 0.66
CDCA3-212ENST00000604599 CCER1Q8TC90 406 aaPredicted RBP19.15■□□□□ 0.66
CDCA3-212ENST00000604599 DIEXFQ68CQ4 756 aaKnown RBP19.14■□□□□ 0.66
CDCA3-212ENST00000604599 ABCC9O60706 1549 aa19.07■□□□□ 0.64
CDCA3-212ENST00000604599 RSF1Q96T23 1441 aaPredicted RBP18.98■□□□□ 0.63
CDCA3-212ENST00000604599 RB1CC1Q8TDY2 1594 aa18.97■□□□□ 0.63
CDCA3-212ENST00000604599 YTHDC1Q96MU7 727 aaKnown RBP18.9■□□□□ 0.62
CDCA3-212ENST00000604599 TTBK1Q5TCY1 1321 aaPredicted RBP18.85■□□□□ 0.61
CDCA3-212ENST00000604599 ZNF316A6NFI3 1004 aaPredicted RBP18.75■□□□□ 0.59
CDCA3-212ENST00000604599 SCRIBQ14160 1630 aa18.74■□□□□ 0.59
CDCA3-212ENST00000604599 MIER1Q8N108 512 aa18.66■□□□□ 0.58
CDCA3-212ENST00000604599 WRNQ14191 1432 aaPredicted RBP eCLIP18.53■□□□□ 0.56
CDCA3-212ENST00000604599 CEP162Q5TB80 1403 aa18.49■□□□□ 0.55
CDCA3-212ENST00000604599 CECR2Q9BXF3 1484 aa18.48■□□□□ 0.55
CDCA3-212ENST00000604599 MROH2BQ7Z745 1585 aa18.44■□□□□ 0.54
CDCA3-212ENST00000604599 WIZO95785 1651 aa18.41■□□□□ 0.54
CDCA3-212ENST00000604599 HNRNPUL2Q1KMD3 747 aaKnown RBP18.38■□□□□ 0.53
CDCA3-212ENST00000604599 SUPT16HQ9Y5B9 1047 aaKnown RBP18.38■□□□□ 0.53
CDCA3-212ENST00000604599 EIF4G1Q04637 1599 aaKnown RBP18.34■□□□□ 0.53
CDCA3-212ENST00000604599 CCDC88BA6NC98 1476 aa18.33■□□□□ 0.53
CDCA3-212ENST00000604599 ABCC8Q09428 1581 aa18.32■□□□□ 0.52
CDCA3-212ENST00000604599 TNIKQ9UKE5 1360 aa18.31■□□□□ 0.52
CDCA3-212ENST00000604599 ANP32EQ9BTT0 268 aa18.3■□□□□ 0.52
CDCA3-212ENST00000604599 UBTFP17480 764 aaKnown RBP18.3■□□□□ 0.52
CDCA3-212ENST00000604599 TSHZ2Q9NRE2 1034 aa18.29■□□□□ 0.52
CDCA3-212ENST00000604599 BCL11AQ9H165 835 aa18.28■□□□□ 0.52
CDCA3-212ENST00000604599 SOGA1O94964 1423 aa18.27■□□□□ 0.52
CDCA3-212ENST00000604599 CLSPNQ9HAW4 1339 aa18.25■□□□□ 0.51
CDCA3-212ENST00000604599 BAZ1AQ9NRL2 1556 aaPredicted RBP18.23■□□□□ 0.51
CDCA3-212ENST00000604599 CSRNP3Q8WYN3 585 aa18.18■□□□□ 0.5
CDCA3-212ENST00000604599 RUSC2Q8N2Y8 1516 aa18.17■□□□□ 0.5
CDCA3-212ENST00000604599 GOLGA3Q08378 1498 aa18.1■□□□□ 0.49
CDCA3-212ENST00000604599 NACADO15069 1562 aa18.1■□□□□ 0.49
CDCA3-212ENST00000604599 EEA1Q15075 1411 aa18.07■□□□□ 0.48
CDCA3-212ENST00000604599 BCANQ96GW7 911 aa18.06■□□□□ 0.48
CDCA3-212ENST00000604599 APLP2Q06481 763 aa18■□□□□ 0.47
CDCA3-212ENST00000604599 TOP2AP11388 1531 aaKnown RBP17.99■□□□□ 0.47
CDCA3-212ENST00000604599 CLIP1P30622 1438 aa17.98■□□□□ 0.47
CDCA3-212ENST00000604599 SMARCA2P51531 1590 aa17.97■□□□□ 0.47
CDCA3-212ENST00000604599 KCNH8Q96L42 1107 aa17.97■□□□□ 0.47
CDCA3-212ENST00000604599 DHX57Q6P158 1386 aaKnown RBP17.97■□□□□ 0.47
CDCA3-212ENST00000604599 VPS8Q8N3P4 1428 aa17.95■□□□□ 0.46
CDCA3-212ENST00000604599 RANGAP1P46060 587 aaPredicted RBP17.95■□□□□ 0.46
CDCA3-212ENST00000604599 FKBP8Q14318 412 aa17.92■□□□□ 0.46
CDCA3-212ENST00000604599 CEP164Q9UPV0 1460 aa17.91■□□□□ 0.46
CDCA3-212ENST00000604599 RBM19Q9Y4C8 960 aaKnown RBP17.86■□□□□ 0.45
CDCA3-212ENST00000604599 KIF21BO75037 1637 aa17.84■□□□□ 0.45
CDCA3-212ENST00000604599 SMARCA4P51532 1647 aa17.81■□□□□ 0.44
CDCA3-212ENST00000604599 ITGAEP38570 1179 aa17.78■□□□□ 0.44
CDCA3-212ENST00000604599 RAPGEF2Q9Y4G8 1499 aa17.77■□□□□ 0.44
CDCA3-212ENST00000604599 NEFLP07196 543 aa17.75■□□□□ 0.43
CDCA3-212ENST00000604599 SYNJ1O43426 1573 aa17.73■□□□□ 0.43
CDCA3-212ENST00000604599 BAZ1BQ9UIG0 1483 aaKnown RBP17.72■□□□□ 0.43
CDCA3-212ENST00000604599 MSH5O43196 834 aa17.71■□□□□ 0.43
CDCA3-212ENST00000604599 KANK4Q5T7N3 995 aaPredicted RBP17.7■□□□□ 0.42
CDCA3-212ENST00000604599 DDX10Q13206 875 aaKnown RBP17.7■□□□□ 0.42
CDCA3-212ENST00000604599 TRIM52Q96A61 297 aa17.68■□□□□ 0.42
CDCA3-212ENST00000604599 RRBP1Q9P2E9 1410 aaKnown RBP17.6■□□□□ 0.41
CDCA3-212ENST00000604599 ARAP1Q96P48 1450 aa17.58■□□□□ 0.4
CDCA3-212ENST00000604599 ERICH6Q7L0X2 663 aa17.58■□□□□ 0.4
CDCA3-212ENST00000604599 CUX2O14529 1486 aa17.57■□□□□ 0.4
CDCA3-212ENST00000604599 MAPKBP1O60336 1514 aa17.56■□□□□ 0.4
CDCA3-212ENST00000604599 CCNB3Q8WWL7 1395 aa17.55■□□□□ 0.4
CDCA3-212ENST00000604599 HIRIP3Q9BW71 556 aaPredicted RBP17.55■□□□□ 0.4
CDCA3-212ENST00000604599 WDR97A6NE52 1622 aa17.54■□□□□ 0.4
CDCA3-212ENST00000604599 RAB3GAP2Q9H2M9 1393 aa17.54■□□□□ 0.4
CDCA3-212ENST00000604599 PPP1R15AO75807 674 aaPredicted RBP17.52■□□□□ 0.4
CDCA3-212ENST00000604599 FANCIQ9NVI1 1328 aa17.51■□□□□ 0.39
CDCA3-212ENST00000604599 SIN3AQ96ST3 1273 aa17.5■□□□□ 0.39
CDCA3-212ENST00000604599 ANP32CO43423 234 aa17.49■□□□□ 0.39
CDCA3-212ENST00000604599 IRX6P78412 446 aaPredicted RBP17.49■□□□□ 0.39
CDCA3-212ENST00000604599 CCER2I3L3R5 266 aa17.47■□□□□ 0.39
CDCA3-212ENST00000604599 CDK11AQ9UQ88 783 aaPredicted RBP17.46■□□□□ 0.39
CDCA3-212ENST00000604599 PRKCSHP14314 528 aaPredicted RBP17.44■□□□□ 0.38
CDCA3-212ENST00000604599 UNC13AQ9UPW8 1703 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms