RNA–Protein interactions for RNA: ENST00000603669.5

GRAMD1A-213, Transcript of GRAM domain containing 1A, humanhuman

TSL 5

Gene GRAMD1A, Length 552 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GRAMD1A-213ENST00000603669 AQRO60306 1485 aaKnown RBP eCLIP28.35■■■□□ 2.138e-22■■■■■ 116.7
GRAMD1A-213ENST00000603669 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.03□□□□□ -0.163e-8■■■■■ 116
GRAMD1A-213ENST00000603669 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.86□□□□□ -0.359e-10■■■■■ 79.8
GRAMD1A-213ENST00000603669 EFTUD2Q15029 972 aaKnown RBP eCLIP13.99□□□□□ -0.172e-10■■■■■ 58.2
GRAMD1A-213ENST00000603669 WRNQ14191 1432 aaPredicted RBP eCLIP27.47■■□□□ 1.999e-6■■■■■ 50.1
GRAMD1A-213ENST00000603669 DDX3XO00571 662 aaKnown RBP eCLIP14.93□□□□□ -0.029e-18■■■■■ 42
GRAMD1A-213ENST00000603669 TARDBPQ13148 414 aaKnown RBP eCLIP15.84■□□□□ 0.131e-9■■■■■ 37.4
GRAMD1A-213ENST00000603669 EIF4G2P78344 907 aaKnown RBP eCLIP20.76■□□□□ 0.911e-6■■■■■ 33.8
GRAMD1A-213ENST00000603669 SF3B1O75533 1304 aaKnown RBP eCLIP16.86■□□□□ 0.298e-11■■■■■ 31.3
GRAMD1A-213ENST00000603669 GTF2F1P35269 517 aaKnown RBP eCLIP17.61■□□□□ 0.411e-9■■■■■ 29.6
GRAMD1A-213ENST00000603669 DKC1O60832 514 aaKnown RBP eCLIP16.93■□□□□ 0.38e-7■■■■■ 29.2
GRAMD1A-213ENST00000603669 TAF15Q92804 592 aaKnown RBP eCLIP12.94□□□□□ -0.343e-6■■■■■ 28.6
GRAMD1A-213ENST00000603669 PCBP2Q15366 365 aaKnown RBP eCLIP13.96□□□□□ -0.171e-6■■■■■ 28.1
GRAMD1A-213ENST00000603669 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.27■□□□□ 0.682e-6■■■■■ 27.5
GRAMD1A-213ENST00000603669 SRSF7Q16629 238 aaKnown RBP eCLIP11.76□□□□□ -0.532e-7■■■■□ 25.7
GRAMD1A-213ENST00000603669 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.5■■□□□ 1.671e-10■■■■□ 24.8
GRAMD1A-213ENST00000603669 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.98■□□□□ 0.319e-8■■■■□ 24.8
GRAMD1A-213ENST00000603669 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.27□□□□□ -0.293e-6■■■■□ 21.7
GRAMD1A-213ENST00000603669 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.51□□□□□ -0.094e-7■■■■□ 21.6
GRAMD1A-213ENST00000603669 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.3■□□□□ 0.522e-9■■■■□ 20.9
GRAMD1A-213ENST00000603669 U2AF2P26368 475 aaKnown RBP eCLIP16.46■□□□□ 0.234e-8■■■■□ 19.6
GRAMD1A-213ENST00000603669 SF3B4Q15427 424 aaKnown RBP eCLIP13.89□□□□□ -0.192e-11■■■□□ 18.7
GRAMD1A-213ENST00000603669 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP15.44■□□□□ 0.063e-9■■■□□ 18.6
GRAMD1A-213ENST00000603669 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.61■□□□□ 0.094e-6■■■□□ 18.5
GRAMD1A-213ENST00000603669 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.55□□□□□ -0.248e-10■■■□□ 18.4
GRAMD1A-213ENST00000603669 NONOQ15233 471 aaKnown RBP eCLIP17.01■□□□□ 0.313e-9■■■□□ 17.9
GRAMD1A-213ENST00000603669 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.41■■□□□ 1.51e-6■■■□□ 17.1
GRAMD1A-213ENST00000603669 CDC40O60508 579 aaKnown RBP eCLIP14.25□□□□□ -0.133e-8■■■□□ 17
GRAMD1A-213ENST00000603669 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.74□□□□□ -0.053e-6■■■□□ 16.9
GRAMD1A-213ENST00000603669 SF3A3Q12874 501 aaKnown RBP eCLIP12.38□□□□□ -0.435e-7■■■□□ 16.2
GRAMD1A-213ENST00000603669 SFPQP23246 707 aaKnown RBP eCLIP17.1■□□□□ 0.331e-7■■■□□ 15.8
GRAMD1A-213ENST00000603669 PRPF4O43172 522 aaKnown RBP eCLIP14.38□□□□□ -0.119e-8■■■□□ 15.4
GRAMD1A-213ENST00000603669 PUM1Q14671 1186 aaKnown RBP eCLIP16.95■□□□□ 0.31e-6■■■□□ 15.3
GRAMD1A-213ENST00000603669 PPIGQ13427 754 aaKnown RBP eCLIP18.24■□□□□ 0.515e-7■■□□□ 13.9
GRAMD1A-213ENST00000603669 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.05■■□□□ 1.442e-7■■□□□ 13.4
GRAMD1A-213ENST00000603669 PCBP1Q15365 356 aaKnown RBP eCLIP16.9■□□□□ 0.38e-7■■□□□ 13.1
GRAMD1A-213ENST00000603669 NCBP2P52298 156 aaKnown RBP eCLIP13.52□□□□□ -0.252e-11■■□□□ 12.9
GRAMD1A-213ENST00000603669 KHSRPQ92945 711 aaKnown RBP eCLIP17.93■□□□□ 0.463e-6■■□□□ 12.5
GRAMD1A-213ENST00000603669 NKRFO15226 690 aaKnown RBP eCLIP17.91■□□□□ 0.461e-7■■□□□ 12.5
GRAMD1A-213ENST00000603669 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.98□□□□□ -0.013e-8■□□□□ 10.9
GRAMD1A-213ENST00000603669 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.88□□□□□ -0.196e-7■□□□□ 10.4
GRAMD1A-213ENST00000603669 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.88■□□□□ 0.615e-7■□□□□ 10.3
GRAMD1A-213ENST00000603669 RBM22Q9NW64 420 aaKnown RBP eCLIP14.96□□□□□ -0.015e-8■□□□□ 10.2
GRAMD1A-213ENST00000603669 FUSP35637 526 aaKnown RBP eCLIP10.54□□□□□ -0.725e-9■□□□□ 9.2
GRAMD1A-213ENST00000603669 RBM5P52756 815 aaKnown RBP eCLIP19.4■□□□□ 0.76e-6■□□□□ 9
GRAMD1A-213ENST00000603669 YBX3P16989 372 aaKnown RBP eCLIP21.48■■□□□ 1.034e-6■□□□□ 8.3
Retrieved 46 of 46 RNA–protein pairs in 10.8 ms