RNA–Protein interactions for RNA: ENST00000600659.2

RPS28-203, Transcript of ribosomal protein S28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPS28, Length 1,326 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-203ENST00000600659 NISCHQ9Y2I1 1504 aa38.77■■■■□ 3.8
RPS28-203ENST00000600659 CCDC180Q9P1Z9 1646 aa34.53■■■■□ 3.12
RPS28-203ENST00000600659 ABCC9O60706 1549 aa33.74■■■□□ 2.99
RPS28-203ENST00000600659 RB1CC1Q8TDY2 1594 aa32.44■■■□□ 2.78
RPS28-203ENST00000600659 NACADO15069 1562 aa32.41■■■□□ 2.78
RPS28-203ENST00000600659 ZCCHC6Q5VYS8 1495 aaKnown RBP32.32■■■□□ 2.76
RPS28-203ENST00000600659 MYO15BQ96JP2 1530 aa32.24■■■□□ 2.75
RPS28-203ENST00000600659 DCAF8L2P0C7V8 631 aa32.14■■■□□ 2.74
RPS28-203ENST00000600659 DCAF1Q9Y4B6 1507 aa32.09■■■□□ 2.73
RPS28-203ENST00000600659 UNC13AQ9UPW8 1703 aa31.88■■■□□ 2.69
RPS28-203ENST00000600659 BICRAQ9NZM4 1560 aa31.6■■■□□ 2.65
RPS28-203ENST00000600659 SCRIBQ14160 1630 aa31.46■■■□□ 2.63
RPS28-203ENST00000600659 PABPN1Q86U42 306 aaKnown RBP eCLIP31.46■■■□□ 2.63
RPS28-203ENST00000600659 SHROOM4Q9ULL8 1493 aa31.15■■■□□ 2.58
RPS28-203ENST00000600659 DNAJC5BQ9UF47 199 aa31.04■■■□□ 2.56
RPS28-203ENST00000600659 EIF4G1Q04637 1599 aaKnown RBP30.69■■■□□ 2.5
RPS28-203ENST00000600659 CC2D2AQ9P2K1 1620 aa30.58■■■□□ 2.49
RPS28-203ENST00000600659 CECR2Q9BXF3 1484 aa30.31■■■□□ 2.44
RPS28-203ENST00000600659 SMARCA4P51532 1647 aa30.12■■■□□ 2.41
RPS28-203ENST00000600659 BAZ1AQ9NRL2 1556 aaPredicted RBP30.02■■■□□ 2.4
RPS28-203ENST00000600659 ATAD2BQ9ULI0 1458 aa29.93■■■□□ 2.38
RPS28-203ENST00000600659 NCAPD3P42695 1498 aa29.91■■■□□ 2.38
RPS28-203ENST00000600659 MROH2BQ7Z745 1585 aa29.9■■■□□ 2.38
RPS28-203ENST00000600659 SMARCA2P51531 1590 aa29.86■■■□□ 2.37
RPS28-203ENST00000600659 PEG3Q9GZU2 1588 aa29.86■■■□□ 2.37
RPS28-203ENST00000600659 HMGXB3Q12766 1538 aa29.79■■■□□ 2.36
RPS28-203ENST00000600659 BAZ1BQ9UIG0 1483 aaKnown RBP29.63■■■□□ 2.33
RPS28-203ENST00000600659 WIZO95785 1651 aa29.59■■■□□ 2.33
RPS28-203ENST00000600659 RSF1Q96T23 1441 aaPredicted RBP29.5■■■□□ 2.31
RPS28-203ENST00000600659 TOP2AP11388 1531 aaKnown RBP29.24■■■□□ 2.27
RPS28-203ENST00000600659 NESP48681 1621 aa29.24■■■□□ 2.27
RPS28-203ENST00000600659 LAMC3Q9Y6N6 1575 aa29.13■■■□□ 2.25
RPS28-203ENST00000600659 ERCC6Q03468 1493 aa29■■■□□ 2.23
RPS28-203ENST00000600659 CADPSQ9ULU8 1353 aa28.98■■■□□ 2.23
RPS28-203ENST00000600659 KIF21AQ7Z4S6 1674 aa28.95■■■□□ 2.22
RPS28-203ENST00000600659 THOC2Q8NI27 1593 aaKnown RBP28.87■■■□□ 2.21
RPS28-203ENST00000600659 CCDC88BA6NC98 1476 aa28.86■■■□□ 2.21
RPS28-203ENST00000600659 CFTRP13569 1480 aa28.86■■■□□ 2.21
RPS28-203ENST00000600659 PDS5BQ9NTI5 1447 aa28.84■■■□□ 2.21
RPS28-203ENST00000600659 CUX2O14529 1486 aa28.8■■■□□ 2.2
RPS28-203ENST00000600659 PRDM2Q13029 1718 aa28.74■■■□□ 2.19
RPS28-203ENST00000600659 FANCD2Q9BXW9 1451 aa28.68■■■□□ 2.18
RPS28-203ENST00000600659 CEP164Q9UPV0 1460 aa28.64■■■□□ 2.18
RPS28-203ENST00000600659 MRC2Q9UBG0 1479 aa28.62■■■□□ 2.17
RPS28-203ENST00000600659 WDR62O43379 1518 aa28.59■■■□□ 2.17
RPS28-203ENST00000600659 SUPT5HO00267 1087 aaKnown RBP28.54■■■□□ 2.16
RPS28-203ENST00000600659 URB2Q14146 1524 aaKnown RBP28.46■■■□□ 2.15
RPS28-203ENST00000600659 TOPBP1Q92547 1522 aa28.25■■■□□ 2.11
RPS28-203ENST00000600659 DNMBPQ6XZF7 1577 aa28.21■■■□□ 2.11
RPS28-203ENST00000600659 ABCC8Q09428 1581 aa28.15■■■□□ 2.1
RPS28-203ENST00000600659 CUX1P39880 1505 aa28.05■■■□□ 2.08
RPS28-203ENST00000600659 IFT140Q96RY7 1462 aa28.03■■■□□ 2.08
RPS28-203ENST00000600659 POLA1P09884 1462 aaPredicted RBP28.01■■■□□ 2.08
RPS28-203ENST00000600659 TARBP1Q13395 1621 aaKnown RBP28■■■□□ 2.07
RPS28-203ENST00000600659 ZNF608Q9ULD9 1512 aaPredicted RBP27.97■■■□□ 2.07
RPS28-203ENST00000600659 FGD5Q6ZNL6 1462 aa27.92■■■□□ 2.06
RPS28-203ENST00000600659 DNAJC5Q9H3Z4 198 aa27.92■■■□□ 2.06
RPS28-203ENST00000600659 EIF4G3O43432 1585 aaKnown RBP27.89■■■□□ 2.05
RPS28-203ENST00000600659 RAD54L2Q9Y4B4 1467 aa27.87■■■□□ 2.05
RPS28-203ENST00000600659 WDR97A6NE52 1622 aa27.82■■■□□ 2.04
RPS28-203ENST00000600659 BIVM-ERCC5R4GMW8 1640 aa27.82■■■□□ 2.04
RPS28-203ENST00000600659 SYNJ1O43426 1573 aa27.81■■■□□ 2.04
RPS28-203ENST00000600659 SOGA1O94964 1423 aa27.8■■■□□ 2.04
RPS28-203ENST00000600659 TOP2BQ02880 1626 aa27.78■■■□□ 2.04
RPS28-203ENST00000600659 WRNQ14191 1432 aaPredicted RBP eCLIP27.77■■■□□ 2.045e-8■■□□□ 13
RPS28-203ENST00000600659 AQRO60306 1485 aaKnown RBP eCLIP27.76■■■□□ 2.031e-6■■■□□ 15.8
RPS28-203ENST00000600659 TDRD9Q8NDG6 1382 aaKnown RBP27.66■■■□□ 2.02
RPS28-203ENST00000600659 ABCA10Q8WWZ4 1543 aa27.66■■■□□ 2.02
RPS28-203ENST00000600659 ABCA5Q8WWZ7 1642 aa27.62■■■□□ 2.01
RPS28-203ENST00000600659 PBRM1Q86U86 1689 aa27.57■■■□□ 2
RPS28-203ENST00000600659 CHD1O14646 1710 aa27.57■■■□□ 2
RPS28-203ENST00000600659 SNAPC4Q5SXM2 1469 aa27.52■■■□□ 2
RPS28-203ENST00000600659 GRIN2BQ13224 1484 aa27.52■■■□□ 2
RPS28-203ENST00000600659 GAPVD1Q14C86 1478 aa27.51■■□□□ 1.99
RPS28-203ENST00000600659 MAGI1Q96QZ7 1491 aaPredicted RBP27.47■■□□□ 1.99
RPS28-203ENST00000600659 OSCARQ8IYS5 282 aa27.46■■□□□ 1.99
RPS28-203ENST00000600659 SYNJ2O15056 1496 aa27.36■■□□□ 1.97
RPS28-203ENST00000600659 ADAMTS12P58397 1594 aa27.33■■□□□ 1.97
RPS28-203ENST00000600659 ERICH3Q5RHP9 1530 aa27.31■■□□□ 1.96
RPS28-203ENST00000600659 FBLN2P98095 1184 aa27.27■■□□□ 1.96
RPS28-203ENST00000600659 CLASP1Q7Z460 1538 aa27.27■■□□□ 1.96
RPS28-203ENST00000600659 RIMBP3CA6NJZ7 1639 aa27.22■■□□□ 1.95
RPS28-203ENST00000600659 RIMBP3BA6NNM3 1639 aa27.22■■□□□ 1.95
RPS28-203ENST00000600659 RIMBP3Q9UFD9 1639 aa27.22■■□□□ 1.95
RPS28-203ENST00000600659 CHMP7Q8WUX9 453 aaPredicted RBP27.21■■□□□ 1.95
RPS28-203ENST00000600659 GRIN2AQ12879 1464 aa27.2■■□□□ 1.94
RPS28-203ENST00000600659 FHAD1B1AJZ9 1412 aa27.19■■□□□ 1.94
RPS28-203ENST00000600659 ARHGEF11O15085 1522 aa27.18■■□□□ 1.94
RPS28-203ENST00000600659 KIF27Q86VH2 1401 aa27.15■■□□□ 1.94
RPS28-203ENST00000600659 CEP170Q5SW79 1584 aa27.12■■□□□ 1.93
RPS28-203ENST00000600659 NUP160Q12769 1436 aa27.1■■□□□ 1.93
RPS28-203ENST00000600659 IGF1RP08069 1367 aa27.09■■□□□ 1.93
RPS28-203ENST00000600659 CUL7Q14999 1698 aa27.06■■□□□ 1.92
RPS28-203ENST00000600659 RUSC2Q8N2Y8 1516 aa27.01■■□□□ 1.91
RPS28-203ENST00000600659 ARAP1Q96P48 1450 aa26.98■■□□□ 1.91
RPS28-203ENST00000600659 SHROOM2Q13796 1616 aa26.97■■□□□ 1.91
RPS28-203ENST00000600659 TRIM41Q8WV44 630 aa26.93■■□□□ 1.9
RPS28-203ENST00000600659 ERCC6L2Q5T890 1561 aa26.9■■□□□ 1.9
RPS28-203ENST00000600659 CARMIL1Q5VZK9 1371 aa26.88■■□□□ 1.89
RPS28-203ENST00000600659 CYB5RLQ6IPT4 315 aa26.78■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms