RNA–Protein interactions for RNA: ENST00000599460.5

SYMPK-213, Transcript of symplekin, humanhuman

TSL 1 (best) BASIC

Gene SYMPK, Length 5,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYMPK-213ENST00000599460 NISCHQ9Y2I1 1504 aa27.13■■□□□ 1.93
SYMPK-213ENST00000599460 DCAF8L2P0C7V8 631 aa26.67■■□□□ 1.86
SYMPK-213ENST00000599460 SHROOM4Q9ULL8 1493 aa25.13■■□□□ 1.61
SYMPK-213ENST00000599460 SUPT5HO00267 1087 aaKnown RBP25.12■■□□□ 1.61
SYMPK-213ENST00000599460 EHMT2Q96KQ7 1210 aa23.99■■□□□ 1.43
SYMPK-213ENST00000599460 FAM9AQ8IZU1 332 aaPredicted RBP23.58■■□□□ 1.37
SYMPK-213ENST00000599460 TRIM41Q8WV44 630 aa23.35■■□□□ 1.33
SYMPK-213ENST00000599460 APLP2Q06481 763 aa23.35■■□□□ 1.33
SYMPK-213ENST00000599460 ABCC9O60706 1549 aa23.33■■□□□ 1.32
SYMPK-213ENST00000599460 RANGAP1P46060 587 aaPredicted RBP23.11■■□□□ 1.29
SYMPK-213ENST00000599460 TTBK1Q5TCY1 1321 aaPredicted RBP23.07■■□□□ 1.28
SYMPK-213ENST00000599460 UBTFP17480 764 aaKnown RBP22.93■■□□□ 1.26
SYMPK-213ENST00000599460 PABPN1Q86U42 306 aaKnown RBP eCLIP22.91■■□□□ 1.261e-6■■□□□ 12.2
SYMPK-213ENST00000599460 PCGF6Q9BYE7 350 aa22.84■■□□□ 1.25
SYMPK-213ENST00000599460 ATP1B4Q9UN42 357 aaPredicted RBP22.82■■□□□ 1.24
SYMPK-213ENST00000599460 CCDC180Q9P1Z9 1646 aa22.62■■□□□ 1.21
SYMPK-213ENST00000599460 CHIC1Q5VXU3 224 aa22.59■■□□□ 1.21
SYMPK-213ENST00000599460 ZCCHC6Q5VYS8 1495 aaKnown RBP22.51■■□□□ 1.19
SYMPK-213ENST00000599460 PPARGC1BQ86YN6 1023 aaKnown RBP22.43■■□□□ 1.18
SYMPK-213ENST00000599460 LOC105371045A0A1W2PR82 267 aa22.4■■□□□ 1.18
SYMPK-213ENST00000599460 CCER1Q8TC90 406 aaPredicted RBP22.4■■□□□ 1.18
SYMPK-213ENST00000599460 SCRIBQ14160 1630 aa22.38■■□□□ 1.17
SYMPK-213ENST00000599460 ZEB1P37275 1124 aaPredicted RBP22.26■■□□□ 1.15
SYMPK-213ENST00000599460 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.16■■□□□ 1.14
SYMPK-213ENST00000599460 HNRNPUL2Q1KMD3 747 aaKnown RBP22.16■■□□□ 1.14
SYMPK-213ENST00000599460 TRIM26Q12899 539 aaPredicted RBP22.13■■□□□ 1.13
SYMPK-213ENST00000599460 ITGAEP38570 1179 aa22.02■■□□□ 1.12
SYMPK-213ENST00000599460 RB1CC1Q8TDY2 1594 aa22■■□□□ 1.11
SYMPK-213ENST00000599460 MYT1LQ9UL68 1186 aa21.88■■□□□ 1.09
SYMPK-213ENST00000599460 PELP1Q8IZL8 1130 aaKnown RBP21.88■■□□□ 1.09
SYMPK-213ENST00000599460 NACADO15069 1562 aa21.84■■□□□ 1.09
SYMPK-213ENST00000599460 FBLN2P98095 1184 aa21.75■■□□□ 1.07
SYMPK-213ENST00000599460 CSRNP3Q8WYN3 585 aa21.67■■□□□ 1.06
SYMPK-213ENST00000599460 CENPBP07199 599 aaPredicted RBP21.66■■□□□ 1.06
SYMPK-213ENST00000599460 FAM50AQ14320 339 aaKnown RBP21.62■■□□□ 1.05
SYMPK-213ENST00000599460 HRCP23327 699 aa21.58■■□□□ 1.05
SYMPK-213ENST00000599460 DCAF1Q9Y4B6 1507 aa21.56■■□□□ 1.04
SYMPK-213ENST00000599460 RSF1Q96T23 1441 aaPredicted RBP21.54■■□□□ 1.04
SYMPK-213ENST00000599460 P3H3Q8IVL6 736 aa21.53■■□□□ 1.04
SYMPK-213ENST00000599460 YTHDC1Q96MU7 727 aaKnown RBP21.5■■□□□ 1.03
SYMPK-213ENST00000599460 POLR3GLQ9BT43 218 aa21.42■■□□□ 1.02
SYMPK-213ENST00000599460 MYT1Q01538 1121 aa21.41■■□□□ 1.02
SYMPK-213ENST00000599460 ARID3CA6NKF2 412 aa21.39■■□□□ 1.02
SYMPK-213ENST00000599460 TRIM52Q96A61 297 aa21.38■■□□□ 1.01
SYMPK-213ENST00000599460 BAZ1BQ9UIG0 1483 aaKnown RBP21.36■■□□□ 1.01
SYMPK-213ENST00000599460 BAZ1AQ9NRL2 1556 aaPredicted RBP21.28■■□□□ 1
SYMPK-213ENST00000599460 CECR2Q9BXF3 1484 aa21.27■■□□□ 1
SYMPK-213ENST00000599460 NEFLP07196 543 aa21.23■□□□□ 0.99
SYMPK-213ENST00000599460 NEUROD1Q13562 356 aa21.23■□□□□ 0.99
SYMPK-213ENST00000599460 CNGB1Q14028 1251 aaPredicted RBP21.19■□□□□ 0.98
SYMPK-213ENST00000599460 CDK11AQ9UQ88 783 aaPredicted RBP21.15■□□□□ 0.98
SYMPK-213ENST00000599460 ZNF777Q9ULD5 760 aaPredicted RBP21.13■□□□□ 0.97
SYMPK-213ENST00000599460 WRNQ14191 1432 aaPredicted RBP eCLIP21.1■□□□□ 0.97
SYMPK-213ENST00000599460 CHMP7Q8WUX9 453 aaPredicted RBP21.06■□□□□ 0.96
SYMPK-213ENST00000599460 SLC4A1APQ9BWU0 796 aaKnown RBP21.06■□□□□ 0.96
SYMPK-213ENST00000599460 MROH2BQ7Z745 1585 aa21.02■□□□□ 0.96
SYMPK-213ENST00000599460 MYO15BQ96JP2 1530 aa21.02■□□□□ 0.96
SYMPK-213ENST00000599460 ZNF326Q5BKZ1 582 aaKnown RBP21.02■□□□□ 0.95
SYMPK-213ENST00000599460 DIEXFQ68CQ4 756 aaKnown RBP21■□□□□ 0.95
SYMPK-213ENST00000599460 EEA1Q15075 1411 aa20.97■□□□□ 0.95
SYMPK-213ENST00000599460 CLIP1P30622 1438 aa20.94■□□□□ 0.94
SYMPK-213ENST00000599460 NPM1P06748 294 aaKnown RBP eCLIP20.92■□□□□ 0.94
SYMPK-213ENST00000599460 GOLGA3Q08378 1498 aa20.91■□□□□ 0.94
SYMPK-213ENST00000599460 ERICH6Q7L0X2 663 aa20.9■□□□□ 0.94
SYMPK-213ENST00000599460 KIF27Q86VH2 1401 aa20.9■□□□□ 0.94
SYMPK-213ENST00000599460 ERCC6Q03468 1493 aa20.89■□□□□ 0.94
SYMPK-213ENST00000599460 SMARCA2P51531 1590 aa20.87■□□□□ 0.93
SYMPK-213ENST00000599460 CCDC88BA6NC98 1476 aa20.85■□□□□ 0.93
SYMPK-213ENST00000599460 MTUS2Q5JR59 1369 aa20.81■□□□□ 0.92
SYMPK-213ENST00000599460 CEP162Q5TB80 1403 aa20.81■□□□□ 0.92
SYMPK-213ENST00000599460 CHIC2Q9UKJ5 165 aa20.77■□□□□ 0.92
SYMPK-213ENST00000599460 WIZO95785 1651 aa20.77■□□□□ 0.91
SYMPK-213ENST00000599460 CEP164Q9UPV0 1460 aa20.76■□□□□ 0.91
SYMPK-213ENST00000599460 ZNF316A6NFI3 1004 aaPredicted RBP20.74■□□□□ 0.91
SYMPK-213ENST00000599460 TNIKQ9UKE5 1360 aa20.71■□□□□ 0.91
SYMPK-213ENST00000599460 TOP2AP11388 1531 aaKnown RBP20.7■□□□□ 0.9
SYMPK-213ENST00000599460 ANP32CO43423 234 aa20.69■□□□□ 0.9
SYMPK-213ENST00000599460 BCANQ96GW7 911 aa20.69■□□□□ 0.9
SYMPK-213ENST00000599460 SOGA1O94964 1423 aa20.66■□□□□ 0.9
SYMPK-213ENST00000599460 ABCC8Q09428 1581 aa20.66■□□□□ 0.9
SYMPK-213ENST00000599460 CUX2O14529 1486 aa20.66■□□□□ 0.9
SYMPK-213ENST00000599460 ESF1Q9H501 851 aaKnown RBP20.66■□□□□ 0.9
SYMPK-213ENST00000599460 TSPY4P0CV99 314 aa20.64■□□□□ 0.89
SYMPK-213ENST00000599460 TSPY10P0CW01 314 aa20.64■□□□□ 0.89
SYMPK-213ENST00000599460 TONSLQ96HA7 1378 aa20.62■□□□□ 0.89
SYMPK-213ENST00000599460 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.61■□□□□ 0.896e-7■■■□□ 16.6
SYMPK-213ENST00000599460 SMARCA4P51532 1647 aa20.61■□□□□ 0.89
SYMPK-213ENST00000599460 KCNH8Q96L42 1107 aa20.61■□□□□ 0.89
SYMPK-213ENST00000599460 PLEKHD1A6NEE1 506 aa20.6■□□□□ 0.89
SYMPK-213ENST00000599460 PDS5BQ9NTI5 1447 aa20.6■□□□□ 0.89
SYMPK-213ENST00000599460 ATAD2BQ9ULI0 1458 aa20.59■□□□□ 0.89
SYMPK-213ENST00000599460 CARMIL1Q5VZK9 1371 aa20.59■□□□□ 0.89
SYMPK-213ENST00000599460 CHGAP10645 457 aaKnown RBP20.59■□□□□ 0.89
SYMPK-213ENST00000599460 STAG3Q9UJ98 1225 aa20.53■□□□□ 0.88
SYMPK-213ENST00000599460 PLPPR3Q6T4P5 718 aa20.51■□□□□ 0.87
SYMPK-213ENST00000599460 RRP7BPQ9NSQ0 103 aa20.51■□□□□ 0.87
SYMPK-213ENST00000599460 EIF4G1Q04637 1599 aaKnown RBP20.51■□□□□ 0.87
SYMPK-213ENST00000599460 CADPSQ9ULU8 1353 aa20.5■□□□□ 0.87
SYMPK-213ENST00000599460 CFDP1Q9UEE9 299 aaPredicted RBP20.43■□□□□ 0.86
SYMPK-213ENST00000599460 TDRD9Q8NDG6 1382 aaKnown RBP20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms