RNA–Protein interactions for RNA: ENST00000590301.1

NPC1-208, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

TSL 2

Gene NPC1, Length 410 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-208ENST00000590301 NISCHQ9Y2I1 1504 aa18.79■□□□□ 0.6
NPC1-208ENST00000590301 CCDC180Q9P1Z9 1646 aa16.78■□□□□ 0.28
NPC1-208ENST00000590301 AEBP2Q6ZN18 517 aaPredicted RBP16.76■□□□□ 0.27
NPC1-208ENST00000590301 ABCC9O60706 1549 aa16.66■□□□□ 0.26
NPC1-208ENST00000590301 CHIC1Q5VXU3 224 aa15.99■□□□□ 0.15
NPC1-208ENST00000590301 RB1CC1Q8TDY2 1594 aa15.95■□□□□ 0.14
NPC1-208ENST00000590301 NACADO15069 1562 aa15.89■□□□□ 0.13
NPC1-208ENST00000590301 DCAF8L2P0C7V8 631 aa15.78■□□□□ 0.12
NPC1-208ENST00000590301 MYO15BQ96JP2 1530 aa15.78■□□□□ 0.12
NPC1-208ENST00000590301 ZCCHC6Q5VYS8 1495 aaKnown RBP15.6■□□□□ 0.09
NPC1-208ENST00000590301 DCAF1Q9Y4B6 1507 aa15.58■□□□□ 0.09
NPC1-208ENST00000590301 PABPN1Q86U42 306 aaKnown RBP eCLIP15.54■□□□□ 0.08
NPC1-208ENST00000590301 DNAJC5BQ9UF47 199 aa15.52■□□□□ 0.08
NPC1-208ENST00000590301 BICRAQ9NZM4 1560 aa15.42■□□□□ 0.06
NPC1-208ENST00000590301 SHROOM4Q9ULL8 1493 aa15.4■□□□□ 0.06
NPC1-208ENST00000590301 UNC13AQ9UPW8 1703 aa15.37■□□□□ 0.05
NPC1-208ENST00000590301 SCRIBQ14160 1630 aa15.25■□□□□ 0.03
NPC1-208ENST00000590301 EIF4G1Q04637 1599 aaKnown RBP15.07■□□□□ 0
NPC1-208ENST00000590301 CECR2Q9BXF3 1484 aa15.04■□□□□ -0
NPC1-208ENST00000590301 CC2D2AQ9P2K1 1620 aa15.03■□□□□ -0
NPC1-208ENST00000590301 NCAPD3P42695 1498 aa14.69□□□□□ -0.06
NPC1-208ENST00000590301 ATAD2BQ9ULI0 1458 aa14.63□□□□□ -0.07
NPC1-208ENST00000590301 SMARCA2P51531 1590 aa14.61□□□□□ -0.07
NPC1-208ENST00000590301 BAZ1AQ9NRL2 1556 aaPredicted RBP14.6□□□□□ -0.07
NPC1-208ENST00000590301 SMARCA4P51532 1647 aa14.59□□□□□ -0.07
NPC1-208ENST00000590301 HMGXB3Q12766 1538 aa14.57□□□□□ -0.08
NPC1-208ENST00000590301 PEG3Q9GZU2 1588 aa14.5□□□□□ -0.09
NPC1-208ENST00000590301 BAZ1BQ9UIG0 1483 aaKnown RBP14.5□□□□□ -0.09
NPC1-208ENST00000590301 MROH2BQ7Z745 1585 aa14.44□□□□□ -0.1
NPC1-208ENST00000590301 ERCC6Q03468 1493 aa14.43□□□□□ -0.1
NPC1-208ENST00000590301 CUX2O14529 1486 aa14.39□□□□□ -0.11
NPC1-208ENST00000590301 SENP3Q9H4L4 574 aaPredicted RBP14.38□□□□□ -0.11
NPC1-208ENST00000590301 NESP48681 1621 aa14.32□□□□□ -0.12
NPC1-208ENST00000590301 LAMC3Q9Y6N6 1575 aa14.3□□□□□ -0.12
NPC1-208ENST00000590301 PDS5BQ9NTI5 1447 aa14.28□□□□□ -0.12
NPC1-208ENST00000590301 CADPSQ9ULU8 1353 aa14.25□□□□□ -0.13
NPC1-208ENST00000590301 DNAJC5Q9H3Z4 198 aa14.25□□□□□ -0.13
NPC1-208ENST00000590301 RSF1Q96T23 1441 aaPredicted RBP14.24□□□□□ -0.13
NPC1-208ENST00000590301 WIZO95785 1651 aa14.2□□□□□ -0.14
NPC1-208ENST00000590301 PHF23Q9BUL5 403 aaPredicted RBP14.19□□□□□ -0.14
NPC1-208ENST00000590301 THOC2Q8NI27 1593 aaKnown RBP14.15□□□□□ -0.14
NPC1-208ENST00000590301 TOP2AP11388 1531 aaKnown RBP14.14□□□□□ -0.15
NPC1-208ENST00000590301 CFTRP13569 1480 aa14.11□□□□□ -0.15
NPC1-208ENST00000590301 MRC2Q9UBG0 1479 aa14.11□□□□□ -0.15
NPC1-208ENST00000590301 CEP164Q9UPV0 1460 aa14.06□□□□□ -0.16
NPC1-208ENST00000590301 KIF21AQ7Z4S6 1674 aa14.06□□□□□ -0.16
NPC1-208ENST00000590301 FANCD2Q9BXW9 1451 aa14.06□□□□□ -0.16
NPC1-208ENST00000590301 WDR62O43379 1518 aa14.05□□□□□ -0.16
NPC1-208ENST00000590301 CCDC88BA6NC98 1476 aa13.97□□□□□ -0.17
NPC1-208ENST00000590301 URB2Q14146 1524 aaKnown RBP13.9□□□□□ -0.19
NPC1-208ENST00000590301 ABCC8Q09428 1581 aa13.83□□□□□ -0.19
NPC1-208ENST00000590301 IFT140Q96RY7 1462 aa13.8□□□□□ -0.2
NPC1-208ENST00000590301 TOPBP1Q92547 1522 aa13.79□□□□□ -0.2
NPC1-208ENST00000590301 PRDM2Q13029 1718 aa13.78□□□□□ -0.2
NPC1-208ENST00000590301 OSCARQ8IYS5 282 aa13.76□□□□□ -0.21
NPC1-208ENST00000590301 DNMBPQ6XZF7 1577 aa13.75□□□□□ -0.21
NPC1-208ENST00000590301 ZNF608Q9ULD9 1512 aaPredicted RBP13.69□□□□□ -0.22
NPC1-208ENST00000590301 POLA1P09884 1462 aaPredicted RBP13.66□□□□□ -0.22
NPC1-208ENST00000590301 SUPT5HO00267 1087 aaKnown RBP13.64□□□□□ -0.23
NPC1-208ENST00000590301 SOGA1O94964 1423 aa13.63□□□□□ -0.23
NPC1-208ENST00000590301 TARBP1Q13395 1621 aaKnown RBP13.61□□□□□ -0.23
NPC1-208ENST00000590301 EIF4G3O43432 1585 aaKnown RBP13.61□□□□□ -0.23
NPC1-208ENST00000590301 AQRO60306 1485 aaKnown RBP eCLIP13.61□□□□□ -0.236e-6■■■■□ 23.2
NPC1-208ENST00000590301 TRIM41Q8WV44 630 aa13.6□□□□□ -0.23
NPC1-208ENST00000590301 FGD5Q6ZNL6 1462 aa13.58□□□□□ -0.24
NPC1-208ENST00000590301 WDR97A6NE52 1622 aa13.57□□□□□ -0.24
NPC1-208ENST00000590301 RAD54L2Q9Y4B4 1467 aa13.57□□□□□ -0.24
NPC1-208ENST00000590301 CUX1P39880 1505 aa13.56□□□□□ -0.24
NPC1-208ENST00000590301 TDRD9Q8NDG6 1382 aaKnown RBP13.56□□□□□ -0.24
NPC1-208ENST00000590301 GRIN2BQ13224 1484 aa13.51□□□□□ -0.25
NPC1-208ENST00000590301 FBLN2P98095 1184 aa13.51□□□□□ -0.25
NPC1-208ENST00000590301 MAGI1Q96QZ7 1491 aaPredicted RBP13.49□□□□□ -0.25
NPC1-208ENST00000590301 ARHGEF11O15085 1522 aa13.48□□□□□ -0.25
NPC1-208ENST00000590301 SNAPC4Q5SXM2 1469 aa13.48□□□□□ -0.25
NPC1-208ENST00000590301 CHMP7Q8WUX9 453 aaPredicted RBP13.47□□□□□ -0.25
NPC1-208ENST00000590301 WRNQ14191 1432 aaPredicted RBP eCLIP13.47□□□□□ -0.25
NPC1-208ENST00000590301 ABCA10Q8WWZ4 1543 aa13.46□□□□□ -0.25
NPC1-208ENST00000590301 GAPVD1Q14C86 1478 aa13.45□□□□□ -0.26
NPC1-208ENST00000590301 RIMBP3CA6NJZ7 1639 aa13.45□□□□□ -0.26
NPC1-208ENST00000590301 RIMBP3BA6NNM3 1639 aa13.45□□□□□ -0.26
NPC1-208ENST00000590301 RIMBP3Q9UFD9 1639 aa13.45□□□□□ -0.26
NPC1-208ENST00000590301 SYNJ2O15056 1496 aa13.44□□□□□ -0.26
NPC1-208ENST00000590301 CHD1O14646 1710 aa13.39□□□□□ -0.27
NPC1-208ENST00000590301 SYNJ1O43426 1573 aa13.39□□□□□ -0.27
NPC1-208ENST00000590301 TOP2BQ02880 1626 aa13.39□□□□□ -0.27
NPC1-208ENST00000590301 CYB5RLQ6IPT4 315 aa13.38□□□□□ -0.27
NPC1-208ENST00000590301 CLASP1Q7Z460 1538 aa13.38□□□□□ -0.27
NPC1-208ENST00000590301 ABCA5Q8WWZ7 1642 aa13.37□□□□□ -0.27
NPC1-208ENST00000590301 FOXD1Q16676 465 aa13.36□□□□□ -0.27
NPC1-208ENST00000590301 ARAP1Q96P48 1450 aa13.36□□□□□ -0.27
NPC1-208ENST00000590301 BIVM-ERCC5R4GMW8 1640 aa13.35□□□□□ -0.27
NPC1-208ENST00000590301 FHAD1B1AJZ9 1412 aa13.31□□□□□ -0.28
NPC1-208ENST00000590301 GRIN2AQ12879 1464 aa13.3□□□□□ -0.28
NPC1-208ENST00000590301 PBRM1Q86U86 1689 aa13.3□□□□□ -0.28
NPC1-208ENST00000590301 ERICH3Q5RHP9 1530 aa13.29□□□□□ -0.28
NPC1-208ENST00000590301 NUP160Q12769 1436 aa13.28□□□□□ -0.28
NPC1-208ENST00000590301 ADAMTS12P58397 1594 aa13.28□□□□□ -0.28
NPC1-208ENST00000590301 TRHP20396 242 aaPredicted RBP13.2□□□□□ -0.3
NPC1-208ENST00000590301 KIF27Q86VH2 1401 aa13.2□□□□□ -0.3
NPC1-208ENST00000590301 CEP170Q5SW79 1584 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms