RNA–Protein interactions for RNA: ENST00000589901.2

MBD3-206, Transcript of methyl-CpG binding domain protein 3, humanhuman

TSL 2

Gene MBD3, Length 740 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3-206ENST00000589901 NISCHQ9Y2I1 1504 aa40.75■■■■■ 4.11
MBD3-206ENST00000589901 ABCC9O60706 1549 aa36.55■■■■□ 3.44
MBD3-206ENST00000589901 CCDC180Q9P1Z9 1646 aa36.45■■■■□ 3.43
MBD3-206ENST00000589901 RB1CC1Q8TDY2 1594 aa34.73■■■■□ 3.15
MBD3-206ENST00000589901 NACADO15069 1562 aa34.5■■■■□ 3.11
MBD3-206ENST00000589901 DCAF8L2P0C7V8 631 aa34.47■■■■□ 3.11
MBD3-206ENST00000589901 DNAJC5BQ9UF47 199 aa34.31■■■■□ 3.08
MBD3-206ENST00000589901 PABPN1Q86U42 306 aaKnown RBP eCLIP34.09■■■■□ 3.05
MBD3-206ENST00000589901 MYO15BQ96JP2 1530 aa34.04■■■■□ 3.04
MBD3-206ENST00000589901 UNC13AQ9UPW8 1703 aa33.89■■■■□ 3.02
MBD3-206ENST00000589901 ZCCHC6Q5VYS8 1495 aaKnown RBP33.78■■■■□ 3
MBD3-206ENST00000589901 BICRAQ9NZM4 1560 aa33.75■■■□□ 2.99
MBD3-206ENST00000589901 DCAF1Q9Y4B6 1507 aa33.63■■■□□ 2.97
MBD3-206ENST00000589901 SCRIBQ14160 1630 aa33.31■■■□□ 2.92
MBD3-206ENST00000589901 SHROOM4Q9ULL8 1493 aa33.25■■■□□ 2.91
MBD3-206ENST00000589901 CC2D2AQ9P2K1 1620 aa32.97■■■□□ 2.87
MBD3-206ENST00000589901 EIF4G1Q04637 1599 aaKnown RBP32.92■■■□□ 2.86
MBD3-206ENST00000589901 CECR2Q9BXF3 1484 aa32.9■■■□□ 2.86
MBD3-206ENST00000589901 NCAPD3P42695 1498 aa31.9■■■□□ 2.7
MBD3-206ENST00000589901 ATAD2BQ9ULI0 1458 aa31.82■■■□□ 2.68
MBD3-206ENST00000589901 SMARCA4P51532 1647 aa31.75■■■□□ 2.67
MBD3-206ENST00000589901 SMARCA2P51531 1590 aa31.68■■■□□ 2.66
MBD3-206ENST00000589901 HMGXB3Q12766 1538 aa31.63■■■□□ 2.65
MBD3-206ENST00000589901 BAZ1AQ9NRL2 1556 aaPredicted RBP31.6■■■□□ 2.65
MBD3-206ENST00000589901 ERCC6Q03468 1493 aa31.52■■■□□ 2.64
MBD3-206ENST00000589901 BAZ1BQ9UIG0 1483 aaKnown RBP31.5■■■□□ 2.63
MBD3-206ENST00000589901 PEG3Q9GZU2 1588 aa31.43■■■□□ 2.62
MBD3-206ENST00000589901 CUX2O14529 1486 aa31.43■■■□□ 2.62
MBD3-206ENST00000589901 MROH2BQ7Z745 1585 aa31.43■■■□□ 2.62
MBD3-206ENST00000589901 DNAJC5Q9H3Z4 198 aa31.42■■■□□ 2.62
MBD3-206ENST00000589901 NESP48681 1621 aa31.42■■■□□ 2.62
MBD3-206ENST00000589901 LAMC3Q9Y6N6 1575 aa31.13■■■□□ 2.57
MBD3-206ENST00000589901 THOC2Q8NI27 1593 aaKnown RBP31.02■■■□□ 2.56
MBD3-206ENST00000589901 WIZO95785 1651 aa31.02■■■□□ 2.56
MBD3-206ENST00000589901 PDS5BQ9NTI5 1447 aa30.98■■■□□ 2.55
MBD3-206ENST00000589901 CADPSQ9ULU8 1353 aa30.95■■■□□ 2.55
MBD3-206ENST00000589901 KIF21AQ7Z4S6 1674 aa30.92■■■□□ 2.54
MBD3-206ENST00000589901 RSF1Q96T23 1441 aaPredicted RBP30.81■■■□□ 2.52
MBD3-206ENST00000589901 MRC2Q9UBG0 1479 aa30.71■■■□□ 2.51
MBD3-206ENST00000589901 WDR62O43379 1518 aa30.63■■■□□ 2.49
MBD3-206ENST00000589901 TOP2AP11388 1531 aaKnown RBP30.63■■■□□ 2.49
MBD3-206ENST00000589901 CEP164Q9UPV0 1460 aa30.6■■■□□ 2.49
MBD3-206ENST00000589901 CFTRP13569 1480 aa30.59■■■□□ 2.49
MBD3-206ENST00000589901 FANCD2Q9BXW9 1451 aa30.59■■■□□ 2.49
MBD3-206ENST00000589901 URB2Q14146 1524 aaKnown RBP30.34■■■□□ 2.45
MBD3-206ENST00000589901 CCDC88BA6NC98 1476 aa30.32■■■□□ 2.44
MBD3-206ENST00000589901 PRDM2Q13029 1718 aa30.14■■■□□ 2.42
MBD3-206ENST00000589901 TRIM41Q8WV44 630 aa30.1■■■□□ 2.41
MBD3-206ENST00000589901 OSCARQ8IYS5 282 aa30.05■■■□□ 2.4
MBD3-206ENST00000589901 TOPBP1Q92547 1522 aa30.01■■■□□ 2.39
MBD3-206ENST00000589901 IFT140Q96RY7 1462 aa29.99■■■□□ 2.39
MBD3-206ENST00000589901 ZNF608Q9ULD9 1512 aaPredicted RBP29.98■■■□□ 2.39
MBD3-206ENST00000589901 ABCC8Q09428 1581 aa29.9■■■□□ 2.38
MBD3-206ENST00000589901 DNMBPQ6XZF7 1577 aa29.87■■■□□ 2.37
MBD3-206ENST00000589901 EIF4G3O43432 1585 aaKnown RBP29.75■■■□□ 2.35
MBD3-206ENST00000589901 AQRO60306 1485 aaKnown RBP eCLIP29.73■■■□□ 2.351e-15■■■□□ 17.5
MBD3-206ENST00000589901 TARBP1Q13395 1621 aaKnown RBP29.71■■■□□ 2.35
MBD3-206ENST00000589901 POLA1P09884 1462 aaPredicted RBP29.71■■■□□ 2.35
MBD3-206ENST00000589901 RAD54L2Q9Y4B4 1467 aa29.63■■■□□ 2.33
MBD3-206ENST00000589901 RIMBP3CA6NJZ7 1639 aa29.6■■■□□ 2.33
MBD3-206ENST00000589901 RIMBP3BA6NNM3 1639 aa29.6■■■□□ 2.33
MBD3-206ENST00000589901 RIMBP3Q9UFD9 1639 aa29.6■■■□□ 2.33
MBD3-206ENST00000589901 SOGA1O94964 1423 aa29.59■■■□□ 2.33
MBD3-206ENST00000589901 TDRD9Q8NDG6 1382 aaKnown RBP29.56■■■□□ 2.32
MBD3-206ENST00000589901 ARHGEF11O15085 1522 aa29.55■■■□□ 2.32
MBD3-206ENST00000589901 FGD5Q6ZNL6 1462 aa29.54■■■□□ 2.32
MBD3-206ENST00000589901 SUPT5HO00267 1087 aaKnown RBP29.53■■■□□ 2.32
MBD3-206ENST00000589901 FBLN2P98095 1184 aa29.53■■■□□ 2.32
MBD3-206ENST00000589901 CUX1P39880 1505 aa29.51■■■□□ 2.32
MBD3-206ENST00000589901 CHD1O14646 1710 aa29.48■■■□□ 2.31
MBD3-206ENST00000589901 SNAPC4Q5SXM2 1469 aa29.4■■■□□ 2.3
MBD3-206ENST00000589901 CYB5RLQ6IPT4 315 aa29.38■■■□□ 2.29
MBD3-206ENST00000589901 WDR97A6NE52 1622 aa29.35■■■□□ 2.29
MBD3-206ENST00000589901 GRIN2BQ13224 1484 aa29.3■■■□□ 2.28
MBD3-206ENST00000589901 CHMP7Q8WUX9 453 aaPredicted RBP29.3■■■□□ 2.28
MBD3-206ENST00000589901 MAGI1Q96QZ7 1491 aaPredicted RBP29.29■■■□□ 2.28
MBD3-206ENST00000589901 ARAP1Q96P48 1450 aa29.27■■■□□ 2.28
MBD3-206ENST00000589901 GAPVD1Q14C86 1478 aa29.22■■■□□ 2.27
MBD3-206ENST00000589901 SYNJ2O15056 1496 aa29.2■■■□□ 2.26
MBD3-206ENST00000589901 CLASP1Q7Z460 1538 aa29.2■■■□□ 2.26
MBD3-206ENST00000589901 ABCA10Q8WWZ4 1543 aa29.19■■■□□ 2.26
MBD3-206ENST00000589901 SYNJ1O43426 1573 aa29.16■■■□□ 2.26
MBD3-206ENST00000589901 PBRM1Q86U86 1689 aa29.12■■■□□ 2.25
MBD3-206ENST00000589901 ABCA5Q8WWZ7 1642 aa29.11■■■□□ 2.25
MBD3-206ENST00000589901 WRNQ14191 1432 aaPredicted RBP eCLIP29.1■■■□□ 2.25
MBD3-206ENST00000589901 TRHP20396 242 aaPredicted RBP29.03■■■□□ 2.24
MBD3-206ENST00000589901 TOP2BQ02880 1626 aa29.02■■■□□ 2.24
MBD3-206ENST00000589901 BIVM-ERCC5R4GMW8 1640 aa28.99■■■□□ 2.23
MBD3-206ENST00000589901 GRIN2AQ12879 1464 aa28.93■■■□□ 2.22
MBD3-206ENST00000589901 ADAMTS12P58397 1594 aa28.89■■■□□ 2.22
MBD3-206ENST00000589901 FHAD1B1AJZ9 1412 aa28.85■■■□□ 2.21
MBD3-206ENST00000589901 NUP160Q12769 1436 aa28.84■■■□□ 2.21
MBD3-206ENST00000589901 CEP170Q5SW79 1584 aa28.82■■■□□ 2.2
MBD3-206ENST00000589901 ERICH3Q5RHP9 1530 aa28.8■■■□□ 2.2
MBD3-206ENST00000589901 ERCC6L2Q5T890 1561 aa28.79■■■□□ 2.2
MBD3-206ENST00000589901 SHROOM2Q13796 1616 aa28.65■■■□□ 2.18
MBD3-206ENST00000589901 PRG4Q92954 1404 aaPredicted RBP28.58■■■□□ 2.17
MBD3-206ENST00000589901 JPH4Q96JJ6 628 aa28.57■■■□□ 2.16
MBD3-206ENST00000589901 IGF1RP08069 1367 aa28.51■■■□□ 2.16
MBD3-206ENST00000589901 KIF27Q86VH2 1401 aa28.49■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms