RNA–Protein interactions for RNA: ENST00000589078.1

APOC1-204, Transcript of apolipoprotein C1, humanhuman

TSL 2

Gene APOC1, Length 213 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APOC1-204ENST00000589078 NISCHQ9Y2I1 1504 aa23.34■■□□□ 1.33
APOC1-204ENST00000589078 ABCC9O60706 1549 aa21.5■■□□□ 1.03
APOC1-204ENST00000589078 CCDC180Q9P1Z9 1646 aa21.18■□□□□ 0.98
APOC1-204ENST00000589078 DNAJC5BQ9UF47 199 aa20.45■□□□□ 0.86
APOC1-204ENST00000589078 RB1CC1Q8TDY2 1594 aa20.31■□□□□ 0.84
APOC1-204ENST00000589078 NACADO15069 1562 aa20.05■□□□□ 0.8
APOC1-204ENST00000589078 UNC13AQ9UPW8 1703 aa19.93■□□□□ 0.78
APOC1-204ENST00000589078 PABPN1Q86U42 306 aaKnown RBP eCLIP19.9■□□□□ 0.78
APOC1-204ENST00000589078 DCAF8L2P0C7V8 631 aa19.79■□□□□ 0.76
APOC1-204ENST00000589078 BICRAQ9NZM4 1560 aa19.75■□□□□ 0.75
APOC1-204ENST00000589078 MYO15BQ96JP2 1530 aa19.63■□□□□ 0.73
APOC1-204ENST00000589078 CC2D2AQ9P2K1 1620 aa19.43■□□□□ 0.7
APOC1-204ENST00000589078 SHROOM4Q9ULL8 1493 aa19.41■□□□□ 0.7
APOC1-204ENST00000589078 CECR2Q9BXF3 1484 aa19.4■□□□□ 0.7
APOC1-204ENST00000589078 ZCCHC6Q5VYS8 1495 aaKnown RBP19.32■□□□□ 0.68
APOC1-204ENST00000589078 EIF4G1Q04637 1599 aaKnown RBP19.28■□□□□ 0.68
APOC1-204ENST00000589078 SCRIBQ14160 1630 aa19.27■□□□□ 0.68
APOC1-204ENST00000589078 DCAF1Q9Y4B6 1507 aa19.25■□□□□ 0.67
APOC1-204ENST00000589078 DNAJC5Q9H3Z4 198 aa19.04■□□□□ 0.64
APOC1-204ENST00000589078 CUX2O14529 1486 aa18.68■□□□□ 0.58
APOC1-204ENST00000589078 ERCC6Q03468 1493 aa18.58■□□□□ 0.57
APOC1-204ENST00000589078 NCAPD3P42695 1498 aa18.48■□□□□ 0.55
APOC1-204ENST00000589078 ATAD2BQ9ULI0 1458 aa18.39■□□□□ 0.54
APOC1-204ENST00000589078 HMGXB3Q12766 1538 aa18.37■□□□□ 0.53
APOC1-204ENST00000589078 NESP48681 1621 aa18.37■□□□□ 0.53
APOC1-204ENST00000589078 SMARCA2P51531 1590 aa18.34■□□□□ 0.53
APOC1-204ENST00000589078 SMARCA4P51532 1647 aa18.33■□□□□ 0.52
APOC1-204ENST00000589078 THOC2Q8NI27 1593 aaKnown RBP18.3■□□□□ 0.52
APOC1-204ENST00000589078 BAZ1BQ9UIG0 1483 aaKnown RBP18.21■□□□□ 0.51
APOC1-204ENST00000589078 LAMC3Q9Y6N6 1575 aa18.18■□□□□ 0.5
APOC1-204ENST00000589078 KIF21AQ7Z4S6 1674 aa18.18■□□□□ 0.5
APOC1-204ENST00000589078 BAZ1AQ9NRL2 1556 aaPredicted RBP18.15■□□□□ 0.5
APOC1-204ENST00000589078 PEG3Q9GZU2 1588 aa18.13■□□□□ 0.49
APOC1-204ENST00000589078 TRIM41Q8WV44 630 aa18.08■□□□□ 0.48
APOC1-204ENST00000589078 PDS5BQ9NTI5 1447 aa18.04■□□□□ 0.48
APOC1-204ENST00000589078 MROH2BQ7Z745 1585 aa18■□□□□ 0.47
APOC1-204ENST00000589078 MRC2Q9UBG0 1479 aa17.95■□□□□ 0.46
APOC1-204ENST00000589078 WDR62O43379 1518 aa17.93■□□□□ 0.46
APOC1-204ENST00000589078 CADPSQ9ULU8 1353 aa17.89■□□□□ 0.45
APOC1-204ENST00000589078 CEP164Q9UPV0 1460 aa17.81■□□□□ 0.44
APOC1-204ENST00000589078 WIZO95785 1651 aa17.79■□□□□ 0.44
APOC1-204ENST00000589078 FANCD2Q9BXW9 1451 aa17.73■□□□□ 0.43
APOC1-204ENST00000589078 OSCARQ8IYS5 282 aa17.69■□□□□ 0.42
APOC1-204ENST00000589078 RSF1Q96T23 1441 aaPredicted RBP17.69■□□□□ 0.42
APOC1-204ENST00000589078 CFTRP13569 1480 aa17.63■□□□□ 0.41
APOC1-204ENST00000589078 URB2Q14146 1524 aaKnown RBP17.63■□□□□ 0.41
APOC1-204ENST00000589078 RIMBP3CA6NJZ7 1639 aa17.62■□□□□ 0.41
APOC1-204ENST00000589078 RIMBP3BA6NNM3 1639 aa17.62■□□□□ 0.41
APOC1-204ENST00000589078 RIMBP3Q9UFD9 1639 aa17.62■□□□□ 0.41
APOC1-204ENST00000589078 PRDM2Q13029 1718 aa17.54■□□□□ 0.4
APOC1-204ENST00000589078 TOP2AP11388 1531 aaKnown RBP17.52■□□□□ 0.4
APOC1-204ENST00000589078 ARHGEF11O15085 1522 aa17.5■□□□□ 0.39
APOC1-204ENST00000589078 ZNF608Q9ULD9 1512 aaPredicted RBP17.47■□□□□ 0.39
APOC1-204ENST00000589078 IFT140Q96RY7 1462 aa17.44■□□□□ 0.38
APOC1-204ENST00000589078 EIF4G3O43432 1585 aaKnown RBP17.41■□□□□ 0.38
APOC1-204ENST00000589078 CHD1O14646 1710 aa17.36■□□□□ 0.37
APOC1-204ENST00000589078 TOPBP1Q92547 1522 aa17.36■□□□□ 0.37
APOC1-204ENST00000589078 SUPT5HO00267 1087 aaKnown RBP17.33■□□□□ 0.36
APOC1-204ENST00000589078 CYB5RLQ6IPT4 315 aa17.32■□□□□ 0.36
APOC1-204ENST00000589078 ARAP1Q96P48 1450 aa17.31■□□□□ 0.36
APOC1-204ENST00000589078 CCDC88BA6NC98 1476 aa17.29■□□□□ 0.36
APOC1-204ENST00000589078 DNMBPQ6XZF7 1577 aa17.28■□□□□ 0.36
APOC1-204ENST00000589078 TARBP1Q13395 1621 aaKnown RBP17.27■□□□□ 0.36
APOC1-204ENST00000589078 ABCC8Q09428 1581 aa17.26■□□□□ 0.35
APOC1-204ENST00000589078 TRHP20396 242 aaPredicted RBP17.25■□□□□ 0.35
APOC1-204ENST00000589078 AQRO60306 1485 aaKnown RBP eCLIP17.24■□□□□ 0.353e-9■■■■■ 27.8
APOC1-204ENST00000589078 FBLN2P98095 1184 aa17.17■□□□□ 0.34
APOC1-204ENST00000589078 POLA1P09884 1462 aaPredicted RBP17.16■□□□□ 0.34
APOC1-204ENST00000589078 CLASP1Q7Z460 1538 aa17.11■□□□□ 0.33
APOC1-204ENST00000589078 SNAPC4Q5SXM2 1469 aa17.09■□□□□ 0.33
APOC1-204ENST00000589078 RAD54L2Q9Y4B4 1467 aa17.09■□□□□ 0.33
APOC1-204ENST00000589078 SYNJ1O43426 1573 aa17.06■□□□□ 0.32
APOC1-204ENST00000589078 TDRD9Q8NDG6 1382 aaKnown RBP17.05■□□□□ 0.32
APOC1-204ENST00000589078 WDR97A6NE52 1622 aa17.05■□□□□ 0.32
APOC1-204ENST00000589078 SOGA1O94964 1423 aa17.04■□□□□ 0.32
APOC1-204ENST00000589078 AEBP2Q6ZN18 517 aaPredicted RBP17.03■□□□□ 0.32
APOC1-204ENST00000589078 FGD5Q6ZNL6 1462 aa17■□□□□ 0.31
APOC1-204ENST00000589078 MAGI1Q96QZ7 1491 aaPredicted RBP17■□□□□ 0.31
APOC1-204ENST00000589078 CHMP7Q8WUX9 453 aaPredicted RBP16.96■□□□□ 0.31
APOC1-204ENST00000589078 PBRM1Q86U86 1689 aa16.95■□□□□ 0.3
APOC1-204ENST00000589078 SYNJ2O15056 1496 aa16.95■□□□□ 0.3
APOC1-204ENST00000589078 GRIN2BQ13224 1484 aa16.95■□□□□ 0.3
APOC1-204ENST00000589078 CUX1P39880 1505 aa16.94■□□□□ 0.3
APOC1-204ENST00000589078 GAPVD1Q14C86 1478 aa16.93■□□□□ 0.3
APOC1-204ENST00000589078 ABCA5Q8WWZ7 1642 aa16.84■□□□□ 0.29
APOC1-204ENST00000589078 ERCC6L2Q5T890 1561 aa16.83■□□□□ 0.28
APOC1-204ENST00000589078 ABCA10Q8WWZ4 1543 aa16.77■□□□□ 0.28
APOC1-204ENST00000589078 CEP170Q5SW79 1584 aa16.76■□□□□ 0.27
APOC1-204ENST00000589078 GRIN2AQ12879 1464 aa16.75■□□□□ 0.27
APOC1-204ENST00000589078 ADAMTS12P58397 1594 aa16.74■□□□□ 0.27
APOC1-204ENST00000589078 KIF13AQ9H1H9 1805 aa16.74■□□□□ 0.27
APOC1-204ENST00000589078 WRNQ14191 1432 aaPredicted RBP eCLIP16.71■□□□□ 0.27
APOC1-204ENST00000589078 SHROOM2Q13796 1616 aa16.71■□□□□ 0.27
APOC1-204ENST00000589078 NUP160Q12769 1436 aa16.7■□□□□ 0.26
APOC1-204ENST00000589078 FHAD1B1AJZ9 1412 aa16.61■□□□□ 0.25
APOC1-204ENST00000589078 TOP2BQ02880 1626 aa16.6■□□□□ 0.25
APOC1-204ENST00000589078 BIVM-ERCC5R4GMW8 1640 aa16.59■□□□□ 0.25
APOC1-204ENST00000589078 ERICH3Q5RHP9 1530 aa16.56■□□□□ 0.24
APOC1-204ENST00000589078 PRG4Q92954 1404 aaPredicted RBP16.55■□□□□ 0.24
APOC1-204ENST00000589078 DIP2BQ9P265 1576 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms