RNA–Protein interactions for RNA: ENST00000588877.5
Retrieved 6 of 6 RNA–protein pairs in 19.4 ms
ABCA5-208, Transcript of ATP binding cassette subfamily A member 5, human
APPRIS P1 TSL 1 (best) BASIC
Gene ABCA5, Length 6,525 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .
RNA | Protein | Prediction (catRAPID) | Interaction (ENCODE eCLIP) | ||||||
---|---|---|---|---|---|---|---|---|---|
Transcript Symbol | Ensembl Transcript ID | Gene | UniProt Accession | Length | Protein Status | Prediction Score | Prediction z-Score | p-Value | Fold Change |
ABCA5-208 | ENST00000588877 | U2AF2 | P26368 | 475 aa | Known RBP eCLIP | 4.15 | □□□□□ -1.74 | 2e-8 | ■■■□□ 14.7 |
ABCA5-208 | ENST00000588877 | PTBP1 | P26599 | 531 aa | Known RBP eCLIP | 3.38 | □□□□□ -1.87 | 5e-8 | ■■■■■ 27 |
ABCA5-208 | ENST00000588877 | HLTF | Q14527 | 1009 aa | Known RBP eCLIP | 3.66 | □□□□□ -1.82 | 2e-7 | ■□□□□ 9.2 |
ABCA5-208 | ENST00000588877 | BCLAF1 | Q9NYF8 | 920 aa | Known RBP eCLIP | 4.28 | □□□□□ -1.73 | 9e-7 | ■■■□□ 18.8 |
ABCA5-208 | ENST00000588877 | PRPF8 | Q6P2Q9 | 2335 aa | Known RBP eCLIP | 2.47 | □□□□□ -2.01 | 5e-6 | ■■■■□ 25.9 |
ABCA5-208 | ENST00000588877 | SF3A3 | Q12874 | 501 aa | Known RBP eCLIP | 3.54 | □□□□□ -1.84 | 5e-6 | ■■■■■ 35.2 |