RNA–Protein interactions for RNA: ENST00000588815.5

CAPNS1-206, Transcript of calpain small subunit 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CAPNS1, Length 1,471 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPNS1-206ENST00000588815 PUM2Q8TB72 1066 aaKnown RBP eCLIP29.58■■■□□ 2.338e-53■■■□□ 14.8
CAPNS1-206ENST00000588815 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP47.05■■■■■ 5.126e-24■■□□□ 13
CAPNS1-206ENST00000588815 UTP3Q9NQZ2 479 aaKnown RBP eCLIP33.31■■■□□ 2.921e-21■■■■■ 79.2
CAPNS1-206ENST00000588815 DDX55Q8NHQ9 600 aaKnown RBP eCLIP35.85■■■■□ 3.338e-20■■□□□ 14.3
CAPNS1-206ENST00000588815 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP33.63■■■□□ 2.978e-17■□□□□ 10.3
CAPNS1-206ENST00000588815 HNRNPKP61978 463 aaKnown RBP eCLIP30.09■■■□□ 2.412e-14■■□□□ 13.1
CAPNS1-206ENST00000588815 GTF2F1P35269 517 aaKnown RBP eCLIP32.36■■■□□ 2.772e-11■■■□□ 17.4
CAPNS1-206ENST00000588815 METAP2P50579 478 aaKnown RBP eCLIP36.31■■■■□ 3.44e-11■□□□□ 10.1
CAPNS1-206ENST00000588815 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP31.21■■■□□ 2.594e-11■□□□□ 10.6
CAPNS1-206ENST00000588815 DDX3XO00571 662 aaKnown RBP eCLIP33.15■■■□□ 2.97e-11■■■■■ 42.7
CAPNS1-206ENST00000588815 SF3B4Q15427 424 aaKnown RBP eCLIP27.56■■■□□ 22e-10■■■■■ 40.3
CAPNS1-206ENST00000588815 UPF1Q92900 1129 aaKnown RBP eCLIP37.98■■■■□ 3.674e-10■■■■□ 22.9
CAPNS1-206ENST00000588815 SF3B1O75533 1304 aaKnown RBP eCLIP32.87■■■□□ 2.859e-10■■■■□ 24.3
CAPNS1-206ENST00000588815 PCBP2Q15366 365 aaKnown RBP eCLIP30.33■■■□□ 2.453e-9■□□□□ 10.3
CAPNS1-206ENST00000588815 PRPF4O43172 522 aaKnown RBP eCLIP30.93■■■□□ 2.545e-9■□□□□ 8.4
CAPNS1-206ENST00000588815 AQRO60306 1485 aaKnown RBP eCLIP50.25■■■■■ 5.638e-9■□□□□ 10.5
CAPNS1-206ENST00000588815 PCBP1Q15365 356 aaKnown RBP eCLIP33.9■■■■□ 3.022e-8■■□□□ 14
CAPNS1-206ENST00000588815 RBM5P52756 815 aaKnown RBP eCLIP36.69■■■■□ 3.462e-8■■■□□ 16.5
CAPNS1-206ENST00000588815 PABPC4Q13310 644 aaKnown RBP eCLIP35.42■■■■□ 3.263e-8■■□□□ 13.7
CAPNS1-206ENST00000588815 EFTUD2Q15029 972 aaKnown RBP eCLIP31.15■■■□□ 2.584e-8■■■■■ 41.9
CAPNS1-206ENST00000588815 G3BP1Q13283 466 aaKnown RBP eCLIP38.36■■■■□ 3.738e-8■■■■□ 23.7
CAPNS1-206ENST00000588815 SF3A3Q12874 501 aaKnown RBP eCLIP30.13■■■□□ 2.419e-8■■■■■ 39.8
CAPNS1-206ENST00000588815 RBM15Q96T37 977 aaKnown RBP eCLIP31.61■■■□□ 2.651e-7■■■□□ 16.1
CAPNS1-206ENST00000588815 FTOQ9C0B1 505 aaKnown RBP eCLIP35.48■■■■□ 3.271e-7■■■□□ 14.8
CAPNS1-206ENST00000588815 PPIGQ13427 754 aaKnown RBP eCLIP33.01■■■□□ 2.882e-7■□□□□ 8.5
CAPNS1-206ENST00000588815 YBX3P16989 372 aaKnown RBP eCLIP36.62■■■■□ 3.454e-7■■■□□ 18.5
CAPNS1-206ENST00000588815 LARP4Q71RC2 724 aaKnown RBP eCLIP29.98■■■□□ 2.395e-7■■■□□ 15.7
CAPNS1-206ENST00000588815 IGF2BP3O00425 579 aaKnown RBP eCLIP34.97■■■■□ 3.195e-7■■■■□ 22.6
CAPNS1-206ENST00000588815 SND1Q7KZF4 910 aaKnown RBP eCLIP32.34■■■□□ 2.777e-7■■□□□ 11.5
CAPNS1-206ENST00000588815 RPS3P23396 243 aaKnown RBP eCLIP30.82■■■□□ 2.538e-7■■■■□ 23
CAPNS1-206ENST00000588815 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP25.26■■□□□ 1.631e-6■■■□□ 15.5
CAPNS1-206ENST00000588815 DDX24Q9GZR7 859 aaKnown RBP eCLIP37.48■■■■□ 3.592e-6■■□□□ 12.4
CAPNS1-206ENST00000588815 SUB1P53999 127 aaKnown RBP eCLIP24.64■■□□□ 1.542e-6■■■□□ 18.2
CAPNS1-206ENST00000588815 BUD13Q9BRD0 619 aaKnown RBP eCLIP32.79■■■□□ 2.844e-6■□□□□ 9.2
CAPNS1-206ENST00000588815 FXR2P51116 673 aaKnown RBP eCLIP35.11■■■■□ 3.215e-6■■□□□ 12.9
CAPNS1-206ENST00000588815 FMR1Q06787 632 aaKnown RBP eCLIP35.46■■■■□ 3.275e-6■■■■□ 22.9
CAPNS1-206ENST00000588815 SERBP1Q8NC51 408 aaKnown RBP eCLIP31.27■■■□□ 2.66e-6■■■■■ 47.7
Retrieved 37 of 37 RNA–protein pairs in 37.3 ms