RNA–Protein interactions for RNA: ENST00000587597.5

RTN2-204, Transcript of reticulon 2, humanhuman

TSL 5

Gene RTN2, Length 2,212 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN2-204ENST00000587597 NISCHQ9Y2I1 1504 aa55.21■■■■■ 6.43
RTN2-204ENST00000587597 CCDC180Q9P1Z9 1646 aa47.9■■■■■ 5.26
RTN2-204ENST00000587597 ZCCHC6Q5VYS8 1495 aaKnown RBP46.38■■■■■ 5.01
RTN2-204ENST00000587597 DCAF8L2P0C7V8 631 aa45.85■■■■■ 4.93
RTN2-204ENST00000587597 ABCC9O60706 1549 aa45.53■■■■■ 4.88
RTN2-204ENST00000587597 SHROOM4Q9ULL8 1493 aa45.46■■■■■ 4.87
RTN2-204ENST00000587597 DCAF1Q9Y4B6 1507 aa45.45■■■■■ 4.87
RTN2-204ENST00000587597 MYO15BQ96JP2 1530 aa44.81■■■■■ 4.76
RTN2-204ENST00000587597 NACADO15069 1562 aa44.61■■■■■ 4.73
RTN2-204ENST00000587597 SCRIBQ14160 1630 aa44.35■■■■■ 4.69
RTN2-204ENST00000587597 RB1CC1Q8TDY2 1594 aa44.23■■■■■ 4.67
RTN2-204ENST00000587597 SUPT5HO00267 1087 aaKnown RBP43.76■■■■■ 4.6
RTN2-204ENST00000587597 UNC13AQ9UPW8 1703 aa43.55■■■■■ 4.56
RTN2-204ENST00000587597 PABPN1Q86U42 306 aaKnown RBP eCLIP43.07■■■■■ 4.49
RTN2-204ENST00000587597 CECR2Q9BXF3 1484 aa43.07■■■■■ 4.49
RTN2-204ENST00000587597 BICRAQ9NZM4 1560 aa43.07■■■■■ 4.49
RTN2-204ENST00000587597 RSF1Q96T23 1441 aaPredicted RBP42.96■■■■■ 4.47
RTN2-204ENST00000587597 MROH2BQ7Z745 1585 aa42.77■■■■■ 4.44
RTN2-204ENST00000587597 BAZ1AQ9NRL2 1556 aaPredicted RBP42.54■■■■■ 4.4
RTN2-204ENST00000587597 WIZO95785 1651 aa42.45■■■■■ 4.39
RTN2-204ENST00000587597 SMARCA4P51532 1647 aa42.41■■■■■ 4.38
RTN2-204ENST00000587597 CHIC1Q5VXU3 224 aa41.86■■■■■ 4.29
RTN2-204ENST00000587597 TOP2AP11388 1531 aaKnown RBP41.83■■■■■ 4.29
RTN2-204ENST00000587597 PEG3Q9GZU2 1588 aa41.78■■■■■ 4.28
RTN2-204ENST00000587597 EIF4G1Q04637 1599 aaKnown RBP41.72■■■■■ 4.27
RTN2-204ENST00000587597 ATAD2BQ9ULI0 1458 aa41.71■■■■■ 4.27
RTN2-204ENST00000587597 SMARCA2P51531 1590 aa41.55■■■■■ 4.24
RTN2-204ENST00000587597 CCDC88BA6NC98 1476 aa41.54■■■■■ 4.24
RTN2-204ENST00000587597 BAZ1BQ9UIG0 1483 aaKnown RBP41.45■■■■■ 4.23
RTN2-204ENST00000587597 NCAPD3P42695 1498 aa41.25■■■■■ 4.19
RTN2-204ENST00000587597 HMGXB3Q12766 1538 aa41.14■■■■■ 4.18
RTN2-204ENST00000587597 CC2D2AQ9P2K1 1620 aa41.11■■■■■ 4.17
RTN2-204ENST00000587597 TRIM41Q8WV44 630 aa40.98■■■■■ 4.15
RTN2-204ENST00000587597 ABCC8Q09428 1581 aa40.82■■■■■ 4.12
RTN2-204ENST00000587597 FAM9AQ8IZU1 332 aaPredicted RBP40.45■■■■■ 4.07
RTN2-204ENST00000587597 LOC105371045A0A1W2PR82 267 aa40.44■■■■■ 4.07
RTN2-204ENST00000587597 DNAJC5BQ9UF47 199 aa40.41■■■■■ 4.06
RTN2-204ENST00000587597 CFTRP13569 1480 aa40.41■■■■■ 4.06
RTN2-204ENST00000587597 WRNQ14191 1432 aaPredicted RBP eCLIP40.38■■■■■ 4.05
RTN2-204ENST00000587597 SYNJ1O43426 1573 aa40.28■■■■■ 4.04
RTN2-204ENST00000587597 CADPSQ9ULU8 1353 aa40.26■■■■■ 4.03
RTN2-204ENST00000587597 PRDM2Q13029 1718 aa40.11■■■■■ 4.01
RTN2-204ENST00000587597 SOGA1O94964 1423 aa40.07■■■■■ 4.01
RTN2-204ENST00000587597 NESP48681 1621 aa40.06■■■■■ 4
RTN2-204ENST00000587597 EHMT2Q96KQ7 1210 aa40.03■■■■■ 4
RTN2-204ENST00000587597 TOP2BQ02880 1626 aa39.99■■■■□ 3.99
RTN2-204ENST00000587597 RUSC2Q8N2Y8 1516 aa39.98■■■■□ 3.99
RTN2-204ENST00000587597 CUX1P39880 1505 aa39.95■■■■□ 3.99
RTN2-204ENST00000587597 BIVM-ERCC5R4GMW8 1640 aa39.92■■■■□ 3.98
RTN2-204ENST00000587597 FANCD2Q9BXW9 1451 aa39.84■■■■□ 3.97
RTN2-204ENST00000587597 LAMC3Q9Y6N6 1575 aa39.78■■■■□ 3.96
RTN2-204ENST00000587597 CSRNP3Q8WYN3 585 aa39.68■■■■□ 3.94
RTN2-204ENST00000587597 EEA1Q15075 1411 aa39.67■■■■□ 3.94
RTN2-204ENST00000587597 CEP164Q9UPV0 1460 aa39.52■■■■□ 3.92
RTN2-204ENST00000587597 PDS5BQ9NTI5 1447 aa39.49■■■■□ 3.91
RTN2-204ENST00000587597 FGD5Q6ZNL6 1462 aa39.48■■■■□ 3.91
RTN2-204ENST00000587597 KIF21AQ7Z4S6 1674 aa39.47■■■■□ 3.91
RTN2-204ENST00000587597 DNMBPQ6XZF7 1577 aa39.43■■■■□ 3.9
RTN2-204ENST00000587597 TOPBP1Q92547 1522 aa39.42■■■■□ 3.9
RTN2-204ENST00000587597 URB2Q14146 1524 aaKnown RBP39.39■■■■□ 3.9
RTN2-204ENST00000587597 KIF27Q86VH2 1401 aa39.29■■■■□ 3.88
RTN2-204ENST00000587597 POLA1P09884 1462 aaPredicted RBP39.27■■■■□ 3.88
RTN2-204ENST00000587597 GOLGA3Q08378 1498 aa39.27■■■■□ 3.88
RTN2-204ENST00000587597 KIF21BO75037 1637 aa39.25■■■■□ 3.87
RTN2-204ENST00000587597 CUX2O14529 1486 aa39.25■■■■□ 3.87
RTN2-204ENST00000587597 RAD54L2Q9Y4B4 1467 aa39.25■■■■□ 3.87
RTN2-204ENST00000587597 UBTFP17480 764 aaKnown RBP39.25■■■■□ 3.87
RTN2-204ENST00000587597 RAPGEF2Q9Y4G8 1499 aa39.21■■■■□ 3.87
RTN2-204ENST00000587597 TNIKQ9UKE5 1360 aa39.18■■■■□ 3.86
RTN2-204ENST00000587597 PRXQ9BXM0 1461 aa39.1■■■■□ 3.85
RTN2-204ENST00000587597 CEP162Q5TB80 1403 aa39.07■■■■□ 3.84
RTN2-204ENST00000587597 PCGF6Q9BYE7 350 aa39.05■■■■□ 3.84
RTN2-204ENST00000587597 ABCA10Q8WWZ4 1543 aa39.05■■■■□ 3.84
RTN2-204ENST00000587597 IGF1RP08069 1367 aa39.03■■■■□ 3.84
RTN2-204ENST00000587597 MRC2Q9UBG0 1479 aa39.01■■■■□ 3.84
RTN2-204ENST00000587597 ERICH3Q5RHP9 1530 aa38.94■■■■□ 3.82
RTN2-204ENST00000587597 WDR97A6NE52 1622 aa38.92■■■■□ 3.82
RTN2-204ENST00000587597 ERCC6Q03468 1493 aa38.89■■■■□ 3.82
RTN2-204ENST00000587597 TDRD9Q8NDG6 1382 aaKnown RBP38.86■■■■□ 3.81
RTN2-204ENST00000587597 TRIM26Q12899 539 aaPredicted RBP38.83■■■■□ 3.81
RTN2-204ENST00000587597 TARBP1Q13395 1621 aaKnown RBP38.82■■■■□ 3.81
RTN2-204ENST00000587597 CARMIL1Q5VZK9 1371 aa38.81■■■■□ 3.8
RTN2-204ENST00000587597 RANGAP1P46060 587 aaPredicted RBP38.8■■■■□ 3.8
RTN2-204ENST00000587597 WDR62O43379 1518 aa38.8■■■■□ 3.8
RTN2-204ENST00000587597 ABCA5Q8WWZ7 1642 aa38.73■■■■□ 3.79
RTN2-204ENST00000587597 CLIP1P30622 1438 aa38.72■■■■□ 3.79
RTN2-204ENST00000587597 THOC2Q8NI27 1593 aaKnown RBP38.71■■■■□ 3.79
RTN2-204ENST00000587597 HRCP23327 699 aa38.7■■■■□ 3.79
RTN2-204ENST00000587597 GAPVD1Q14C86 1478 aa38.68■■■■□ 3.78
RTN2-204ENST00000587597 PPARGC1BQ86YN6 1023 aaKnown RBP38.64■■■■□ 3.78
RTN2-204ENST00000587597 AQRO60306 1485 aaKnown RBP eCLIP38.59■■■■□ 3.77
RTN2-204ENST00000587597 CUL7Q14999 1698 aa38.54■■■■□ 3.76
RTN2-204ENST00000587597 ZNF608Q9ULD9 1512 aaPredicted RBP38.54■■■■□ 3.76
RTN2-204ENST00000587597 IFT140Q96RY7 1462 aa38.52■■■■□ 3.76
RTN2-204ENST00000587597 PBRM1Q86U86 1689 aa38.44■■■■□ 3.74
RTN2-204ENST00000587597 ARAP1Q96P48 1450 aa38.36■■■■□ 3.73
RTN2-204ENST00000587597 VPS8Q8N3P4 1428 aa38.35■■■■□ 3.73
RTN2-204ENST00000587597 ARHGAP35Q9NRY4 1499 aa38.33■■■■□ 3.73
RTN2-204ENST00000587597 GRIN2BQ13224 1484 aa38.3■■■■□ 3.72
RTN2-204ENST00000587597 TTBK1Q5TCY1 1321 aaPredicted RBP38.3■■■■□ 3.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms