RNA–Protein interactions for RNA: ENST00000586126.1

TMC6-205, Transcript of transmembrane channel like 6, humanhuman

TSL 3

Gene TMC6, Length 821 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMC6-205ENST00000586126 SF3B1O75533 1304 aaKnown RBP eCLIP18.12■□□□□ 0.496e-7■■■■■ 79.9
TMC6-205ENST00000586126 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.54■□□□□ 0.41e-6■■■■■ 59.2
TMC6-205ENST00000586126 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.53■□□□□ 0.244e-6■■■■■ 35.7
TMC6-205ENST00000586126 AQRO60306 1485 aaKnown RBP eCLIP29.32■■■□□ 2.282e-10■■■■■ 28.7
TMC6-205ENST00000586126 PTBP1P26599 531 aaKnown RBP eCLIP12.6□□□□□ -0.399e-6■■■■■ 27.7
TMC6-205ENST00000586126 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.04■□□□□ 0.82e-11■■■■□ 25.9
TMC6-205ENST00000586126 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.14■□□□□ 0.172e-6■■■■□ 25.9
TMC6-205ENST00000586126 GTF2F1P35269 517 aaKnown RBP eCLIP18.3■□□□□ 0.521e-8■■■■□ 24.6
TMC6-205ENST00000586126 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.11■□□□□ 0.813e-9■■■■□ 22
TMC6-205ENST00000586126 RBM22Q9NW64 420 aaKnown RBP eCLIP16.6■□□□□ 0.252e-7■■■■□ 22
TMC6-205ENST00000586126 SF3B4Q15427 424 aaKnown RBP eCLIP15.07■□□□□ 01e-8■■■■□ 21.6
TMC6-205ENST00000586126 PPIGQ13427 754 aaKnown RBP eCLIP19.03■□□□□ 0.643e-8■■■■□ 21
TMC6-205ENST00000586126 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.13□□□□□ -0.154e-8■■■■□ 20.1
TMC6-205ENST00000586126 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.5■□□□□ 0.076e-10■■■■□ 20
TMC6-205ENST00000586126 HNRNPMP52272 730 aaKnown RBP eCLIP26.19■■□□□ 1.783e-8■■■□□ 18.8
TMC6-205ENST00000586126 PCBP2Q15366 365 aaKnown RBP eCLIP15.52■□□□□ 0.081e-6■■■□□ 18.5
TMC6-205ENST00000586126 FTOQ9C0B1 505 aaKnown RBP eCLIP18.84■□□□□ 0.613e-8■■■□□ 17.8
TMC6-205ENST00000586126 PRPF4O43172 522 aaKnown RBP eCLIP15.75■□□□□ 0.114e-7■■■□□ 17.6
TMC6-205ENST00000586126 AGGF1Q8N302 714 aaeCLIP15.99■□□□□ 0.152e-9■■■□□ 17.6
TMC6-205ENST00000586126 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.34■□□□□ 0.055e-8■■■□□ 16.9
TMC6-205ENST00000586126 DDX3XO00571 662 aaKnown RBP eCLIP16.92■□□□□ 0.31e-12■■■□□ 16.9
TMC6-205ENST00000586126 SMNDC1O75940 238 aaKnown RBP eCLIP14.81□□□□□ -0.045e-7■■■□□ 16.4
TMC6-205ENST00000586126 EWSR1Q01844 656 aaKnown RBP eCLIP12.09□□□□□ -0.471e-10■■■□□ 16
TMC6-205ENST00000586126 LARP4Q71RC2 724 aaKnown RBP eCLIP15.1■□□□□ 0.011e-7■■■□□ 15.5
TMC6-205ENST00000586126 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.81■■□□□ 1.882e-8■■■□□ 15.2
TMC6-205ENST00000586126 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.63■□□□□ 0.578e-8■■■□□ 15.2
TMC6-205ENST00000586126 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.59■□□□□ 0.096e-11■■■□□ 15.1
TMC6-205ENST00000586126 UPF1Q92900 1129 aaKnown RBP eCLIP23.45■■□□□ 1.343e-6■■■□□ 14.8
TMC6-205ENST00000586126 PCBP1Q15365 356 aaKnown RBP eCLIP18.43■□□□□ 0.541e-7■■■□□ 14.8
TMC6-205ENST00000586126 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.98■□□□□ 0.638e-11■■□□□ 14.3
TMC6-205ENST00000586126 DDX6P26196 483 aaKnown RBP eCLIP17.67■□□□□ 0.426e-7■■□□□ 14.2
TMC6-205ENST00000586126 AARSP49588 968 aaKnown RBP eCLIP17.97■□□□□ 0.473e-7■■□□□ 14.2
TMC6-205ENST00000586126 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.42■□□□□ 0.067e-13■■□□□ 14.1
TMC6-205ENST00000586126 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.86■□□□□ 0.298e-7■■□□□ 14.1
TMC6-205ENST00000586126 ZRANB2O95218 330 aaKnown RBP eCLIP16.53■□□□□ 0.241e-6■■□□□ 13.9
TMC6-205ENST00000586126 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.16■□□□□ 0.346e-8■■□□□ 13.8
TMC6-205ENST00000586126 NONOQ15233 471 aaKnown RBP eCLIP18.73■□□□□ 0.594e-10■■□□□ 13.7
TMC6-205ENST00000586126 CDC40O60508 579 aaKnown RBP eCLIP15.22■□□□□ 0.032e-9■■□□□ 13.5
TMC6-205ENST00000586126 SF3A3Q12874 501 aaKnown RBP eCLIP14.51□□□□□ -0.093e-8■■□□□ 13.4
TMC6-205ENST00000586126 HNRNPKP61978 463 aaKnown RBP eCLIP16.66■□□□□ 0.263e-7■■□□□ 13.3
TMC6-205ENST00000586126 FUSP35637 526 aaKnown RBP eCLIP11.01□□□□□ -0.659e-8■■□□□ 13.2
TMC6-205ENST00000586126 NIPBLQ6KC79 2804 aaeCLIP14.55□□□□□ -0.081e-6■■□□□ 13.2
TMC6-205ENST00000586126 NCBP2P52298 156 aaKnown RBP eCLIP15.15■□□□□ 0.025e-8■■□□□ 13
TMC6-205ENST00000586126 ZNF622Q969S3 477 aaKnown RBP eCLIP21.52■■□□□ 1.047e-8■■□□□ 12.6
TMC6-205ENST00000586126 EFTUD2Q15029 972 aaKnown RBP eCLIP15.62■□□□□ 0.094e-14■■□□□ 12.5
TMC6-205ENST00000586126 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.12■□□□□ 0.331e-10■■□□□ 12.3
TMC6-205ENST00000586126 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.62■□□□□ 0.731e-9■■□□□ 12.2
TMC6-205ENST00000586126 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.94■□□□□ 0.463e-9■■□□□ 12.1
TMC6-205ENST00000586126 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.44■■□□□ 1.662e-10■■□□□ 12
TMC6-205ENST00000586126 RPS3P23396 243 aaKnown RBP eCLIP16.06■□□□□ 0.161e-8■■□□□ 11.9
TMC6-205ENST00000586126 RBM15Q96T37 977 aaKnown RBP eCLIP16.54■□□□□ 0.246e-10■■□□□ 11.7
TMC6-205ENST00000586126 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.71□□□□□ -0.213e-8■■□□□ 11.6
TMC6-205ENST00000586126 U2AF2P26368 475 aaKnown RBP eCLIP18.51■□□□□ 0.553e-8■■□□□ 11.5
TMC6-205ENST00000586126 XRCC6P12956 609 aaKnown RBP eCLIP18.48■□□□□ 0.559e-8■■□□□ 11.5
TMC6-205ENST00000586126 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.53■□□□□ 0.722e-6■■□□□ 11.4
TMC6-205ENST00000586126 FKBP4Q02790 459 aaKnown RBP eCLIP21.32■■□□□ 17e-7■■□□□ 11.4
TMC6-205ENST00000586126 RBFOX2O43251 390 aaKnown RBP eCLIP12.75□□□□□ -0.371e-10■□□□□ 11.2
TMC6-205ENST00000586126 PUM1Q14671 1186 aaKnown RBP eCLIP17.17■□□□□ 0.341e-6■□□□□ 10.9
TMC6-205ENST00000586126 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.2■□□□□ 0.342e-9■□□□□ 10.8
TMC6-205ENST00000586126 AATFQ9NY61 560 aaKnown RBP eCLIP20.17■□□□□ 0.821e-6■□□□□ 10.5
TMC6-205ENST00000586126 AKAP1Q92667 903 aaKnown RBP eCLIP14.55□□□□□ -0.082e-7■□□□□ 10.4
TMC6-205ENST00000586126 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.68■□□□□ 0.749e-7■□□□□ 10.4
TMC6-205ENST00000586126 NKRFO15226 690 aaKnown RBP eCLIP19.19■□□□□ 0.667e-8■□□□□ 10.3
TMC6-205ENST00000586126 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.43■□□□□ 0.386e-8■□□□□ 10.3
TMC6-205ENST00000586126 METAP2P50579 478 aaKnown RBP eCLIP19.02■□□□□ 0.648e-7■□□□□ 10.2
TMC6-205ENST00000586126 LSM11P83369 360 aaKnown RBP eCLIP14.32□□□□□ -0.121e-7■□□□□ 10.2
TMC6-205ENST00000586126 NOLC1Q14978 699 aaKnown RBP eCLIP18.11■□□□□ 0.493e-8■□□□□ 9.6
TMC6-205ENST00000586126 TROVE2P10155 538 aaKnown RBP eCLIP14.62□□□□□ -0.071e-7■□□□□ 9.3
TMC6-205ENST00000586126 PUM2Q8TB72 1066 aaKnown RBP eCLIP15.23■□□□□ 0.033e-12■□□□□ 9.1
TMC6-205ENST00000586126 FXR2P51116 673 aaKnown RBP eCLIP18.44■□□□□ 0.549e-7■□□□□ 8.5
TMC6-205ENST00000586126 DDX42Q86XP3 938 aaKnown RBP eCLIP17.49■□□□□ 0.393e-8■□□□□ 8.2
TMC6-205ENST00000586126 FMR1Q06787 632 aaKnown RBP eCLIP20.77■□□□□ 0.923e-6■□□□□ 8.1
Retrieved 72 of 72 RNA–protein pairs in 11.9 ms