RNA–Protein interactions for RNA: ENST00000585652.5

AP3D1-203, Transcript of adaptor related protein complex 3 subunit delta 1, humanhuman

TSL 2

Gene AP3D1, Length 4,433 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP3D1-203ENST00000585652 NISCHQ9Y2I1 1504 aa23.99■■□□□ 1.43
AP3D1-203ENST00000585652 DCAF8L2P0C7V8 631 aa23.29■■□□□ 1.32
AP3D1-203ENST00000585652 SUPT5HO00267 1087 aaKnown RBP22.44■■□□□ 1.18
AP3D1-203ENST00000585652 SHROOM4Q9ULL8 1493 aa22.4■■□□□ 1.18
AP3D1-203ENST00000585652 EHMT2Q96KQ7 1210 aa21.4■■□□□ 1.02
AP3D1-203ENST00000585652 FAM9AQ8IZU1 332 aaPredicted RBP21.05■□□□□ 0.96
AP3D1-203ENST00000585652 PCGF6Q9BYE7 350 aa20.83■□□□□ 0.92
AP3D1-203ENST00000585652 TRIM41Q8WV44 630 aa20.72■□□□□ 0.91
AP3D1-203ENST00000585652 TTBK1Q5TCY1 1321 aaPredicted RBP20.62■□□□□ 0.89
AP3D1-203ENST00000585652 CHIC1Q5VXU3 224 aa20.49■□□□□ 0.87
AP3D1-203ENST00000585652 RANGAP1P46060 587 aaPredicted RBP20.4■□□□□ 0.86
AP3D1-203ENST00000585652 APLP2Q06481 763 aa20.4■□□□□ 0.86
AP3D1-203ENST00000585652 LOC105371045A0A1W2PR82 267 aa20.37■□□□□ 0.85
AP3D1-203ENST00000585652 PPARGC1BQ86YN6 1023 aaKnown RBP20.26■□□□□ 0.83
AP3D1-203ENST00000585652 UBTFP17480 764 aaKnown RBP20.24■□□□□ 0.83
AP3D1-203ENST00000585652 ABCC9O60706 1549 aa20.24■□□□□ 0.83
AP3D1-203ENST00000585652 CCER1Q8TC90 406 aaPredicted RBP20.08■□□□□ 0.8
AP3D1-203ENST00000585652 TRIM26Q12899 539 aaPredicted RBP20■□□□□ 0.79
AP3D1-203ENST00000585652 PABPN1Q86U42 306 aaKnown RBP eCLIP19.98■□□□□ 0.793e-6■■□□□ 14.5
AP3D1-203ENST00000585652 ZCCHC6Q5VYS8 1495 aaKnown RBP19.96■□□□□ 0.79
AP3D1-203ENST00000585652 ZEB1P37275 1124 aaPredicted RBP19.96■□□□□ 0.79
AP3D1-203ENST00000585652 ATP1B4Q9UN42 357 aaPredicted RBP19.93■□□□□ 0.78
AP3D1-203ENST00000585652 HRCP23327 699 aa19.92■□□□□ 0.78
AP3D1-203ENST00000585652 PELP1Q8IZL8 1130 aaKnown RBP19.82■□□□□ 0.76
AP3D1-203ENST00000585652 CCDC180Q9P1Z9 1646 aa19.68■□□□□ 0.74
AP3D1-203ENST00000585652 SCRIBQ14160 1630 aa19.62■□□□□ 0.73
AP3D1-203ENST00000585652 HNRNPUL2Q1KMD3 747 aaKnown RBP19.58■□□□□ 0.72
AP3D1-203ENST00000585652 ITGAEP38570 1179 aa19.55■□□□□ 0.72
AP3D1-203ENST00000585652 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.53■□□□□ 0.72
AP3D1-203ENST00000585652 CENPBP07199 599 aaPredicted RBP19.51■□□□□ 0.71
AP3D1-203ENST00000585652 YTHDC1Q96MU7 727 aaKnown RBP19.47■□□□□ 0.71
AP3D1-203ENST00000585652 MYT1Q01538 1121 aa19.4■□□□□ 0.7
AP3D1-203ENST00000585652 CSRNP3Q8WYN3 585 aa19.28■□□□□ 0.68
AP3D1-203ENST00000585652 MYO15BQ96JP2 1530 aa19.27■□□□□ 0.68
AP3D1-203ENST00000585652 RSF1Q96T23 1441 aaPredicted RBP19.22■□□□□ 0.67
AP3D1-203ENST00000585652 DIEXFQ68CQ4 756 aaKnown RBP19.09■□□□□ 0.65
AP3D1-203ENST00000585652 FAM50AQ14320 339 aaKnown RBP19.08■□□□□ 0.64
AP3D1-203ENST00000585652 DCAF1Q9Y4B6 1507 aa19.05■□□□□ 0.64
AP3D1-203ENST00000585652 P3H3Q8IVL6 736 aa19.01■□□□□ 0.63
AP3D1-203ENST00000585652 RB1CC1Q8TDY2 1594 aa18.97■□□□□ 0.63
AP3D1-203ENST00000585652 CECR2Q9BXF3 1484 aa18.97■□□□□ 0.63
AP3D1-203ENST00000585652 NACADO15069 1562 aa18.95■□□□□ 0.62
AP3D1-203ENST00000585652 NEUROD1Q13562 356 aa18.9■□□□□ 0.62
AP3D1-203ENST00000585652 POLR3GLQ9BT43 218 aa18.9■□□□□ 0.62
AP3D1-203ENST00000585652 NEFLP07196 543 aa18.88■□□□□ 0.61
AP3D1-203ENST00000585652 CNGB1Q14028 1251 aaPredicted RBP18.88■□□□□ 0.61
AP3D1-203ENST00000585652 ARID3CA6NKF2 412 aa18.82■□□□□ 0.6
AP3D1-203ENST00000585652 FBLN2P98095 1184 aa18.81■□□□□ 0.6
AP3D1-203ENST00000585652 MYT1LQ9UL68 1186 aa18.8■□□□□ 0.6
AP3D1-203ENST00000585652 TRIM52Q96A61 297 aa18.78■□□□□ 0.6
AP3D1-203ENST00000585652 ZNF316A6NFI3 1004 aaPredicted RBP18.76■□□□□ 0.59
AP3D1-203ENST00000585652 MROH2BQ7Z745 1585 aa18.7■□□□□ 0.58
AP3D1-203ENST00000585652 BAZ1AQ9NRL2 1556 aaPredicted RBP18.67■□□□□ 0.58
AP3D1-203ENST00000585652 WRNQ14191 1432 aaPredicted RBP eCLIP18.66■□□□□ 0.58
AP3D1-203ENST00000585652 CEP162Q5TB80 1403 aa18.64■□□□□ 0.57
AP3D1-203ENST00000585652 CLIP1P30622 1438 aa18.63■□□□□ 0.57
AP3D1-203ENST00000585652 GTF3C3Q9Y5Q9 886 aa18.63■□□□□ 0.57
AP3D1-203ENST00000585652 BAZ1BQ9UIG0 1483 aaKnown RBP18.61■□□□□ 0.57
AP3D1-203ENST00000585652 ERICH6Q7L0X2 663 aa18.61■□□□□ 0.57
AP3D1-203ENST00000585652 ZNF326Q5BKZ1 582 aaKnown RBP18.55■□□□□ 0.56
AP3D1-203ENST00000585652 SOGA1O94964 1423 aa18.54■□□□□ 0.56
AP3D1-203ENST00000585652 EEA1Q15075 1411 aa18.53■□□□□ 0.56
AP3D1-203ENST00000585652 GOLGA3Q08378 1498 aa18.53■□□□□ 0.56
AP3D1-203ENST00000585652 TNIKQ9UKE5 1360 aa18.49■□□□□ 0.55
AP3D1-203ENST00000585652 ZNF777Q9ULD5 760 aaPredicted RBP18.48■□□□□ 0.55
AP3D1-203ENST00000585652 CCDC88BA6NC98 1476 aa18.48■□□□□ 0.55
AP3D1-203ENST00000585652 ACIN1Q9UKV3 1341 aaKnown RBP18.47■□□□□ 0.55
AP3D1-203ENST00000585652 ABCC8Q09428 1581 aa18.45■□□□□ 0.54
AP3D1-203ENST00000585652 WIZO95785 1651 aa18.44■□□□□ 0.54
AP3D1-203ENST00000585652 ANP32CO43423 234 aa18.43■□□□□ 0.54
AP3D1-203ENST00000585652 BCANQ96GW7 911 aa18.41■□□□□ 0.54
AP3D1-203ENST00000585652 CHIC2Q9UKJ5 165 aa18.41■□□□□ 0.54
AP3D1-203ENST00000585652 CEP164Q9UPV0 1460 aa18.38■□□□□ 0.53
AP3D1-203ENST00000585652 KIF27Q86VH2 1401 aa18.35■□□□□ 0.53
AP3D1-203ENST00000585652 CDK11AQ9UQ88 783 aaPredicted RBP18.35■□□□□ 0.53
AP3D1-203ENST00000585652 DDX10Q13206 875 aaKnown RBP18.32■□□□□ 0.52
AP3D1-203ENST00000585652 SLC4A1APQ9BWU0 796 aaKnown RBP18.32■□□□□ 0.52
AP3D1-203ENST00000585652 MTUS2Q5JR59 1369 aa18.32■□□□□ 0.52
AP3D1-203ENST00000585652 TONSLQ96HA7 1378 aa18.29■□□□□ 0.52
AP3D1-203ENST00000585652 MIER1Q8N108 512 aa18.28■□□□□ 0.52
AP3D1-203ENST00000585652 HIRIP3Q9BW71 556 aaPredicted RBP18.28■□□□□ 0.52
AP3D1-203ENST00000585652 TOP2AP11388 1531 aaKnown RBP18.21■□□□□ 0.51
AP3D1-203ENST00000585652 CHMP7Q8WUX9 453 aaPredicted RBP18.21■□□□□ 0.51
AP3D1-203ENST00000585652 RRP7BPQ9NSQ0 103 aa18.2■□□□□ 0.5
AP3D1-203ENST00000585652 CUX2O14529 1486 aa18.17■□□□□ 0.5
AP3D1-203ENST00000585652 SCAF1Q9H7N4 1312 aaKnown RBP18.16■□□□□ 0.5
AP3D1-203ENST00000585652 CARMIL1Q5VZK9 1371 aa18.14■□□□□ 0.49
AP3D1-203ENST00000585652 KANK4Q5T7N3 995 aaPredicted RBP18.14■□□□□ 0.49
AP3D1-203ENST00000585652 RUSC2Q8N2Y8 1516 aa18.13■□□□□ 0.49
AP3D1-203ENST00000585652 SMARCA2P51531 1590 aa18.12■□□□□ 0.49
AP3D1-203ENST00000585652 SMARCA4P51532 1647 aa18.11■□□□□ 0.49
AP3D1-203ENST00000585652 ATAD2BQ9ULI0 1458 aa18.1■□□□□ 0.49
AP3D1-203ENST00000585652 VPS8Q8N3P4 1428 aa18.09■□□□□ 0.49
AP3D1-203ENST00000585652 SIN3AQ96ST3 1273 aa18.07■□□□□ 0.48
AP3D1-203ENST00000585652 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.06■□□□□ 0.484e-10■■□□□ 13.5
AP3D1-203ENST00000585652 HNRNPUQ00839 825 aaKnown RBP eCLIP18.04■□□□□ 0.48
AP3D1-203ENST00000585652 TSPY4P0CV99 314 aa18.03■□□□□ 0.48
AP3D1-203ENST00000585652 TSPY10P0CW01 314 aa18.03■□□□□ 0.48
AP3D1-203ENST00000585652 CCNB3Q8WWL7 1395 aa18.03■□□□□ 0.48
AP3D1-203ENST00000585652 FAM9BQ8IZU0 186 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms