RNA–Protein interactions for RNA: ENST00000584784.5

EIF4A1-233, Transcript of eukaryotic translation initiation factor 4A1, human

TSL 5

Gene EIF4A1, Length 818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
EIF4A1-233	ENST00000584784	NIP7	Q9Y221	180 aa	Known RBP eCLIP	12.1	□□□□□ -0.47	1e-323	■■■□□ 14.6
EIF4A1-233	ENST00000584784	AATF	Q9NY61	560 aa	Known RBP eCLIP	11.51	□□□□□ -0.57	1e-323	■■■■□ 25.1
EIF4A1-233	ENST00000584784	DKC1	O60832	514 aa	Known RBP eCLIP	10.93	□□□□□ -0.66	1e-323	■■□□□ 13.3
EIF4A1-233	ENST00000584784	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	9.69	□□□□□ -0.86	1e-323	■■■□□ 14.8
EIF4A1-233	ENST00000584784	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	9.22	□□□□□ -0.93	1e-323	■■■□□ 16.1
EIF4A1-233	ENST00000584784	TRA2A	Q13595	282 aa	Known RBP eCLIP	9.33	□□□□□ -0.92	5e-87	■□□□□ 9.3
EIF4A1-233	ENST00000584784	SSB	P05455	408 aa	Known RBP eCLIP	10.73	□□□□□ -0.69	9e-56	■■■□□ 14.6
EIF4A1-233	ENST00000584784	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	9.13	□□□□□ -0.95	3e-51	■□□□□ 10
EIF4A1-233	ENST00000584784	SF3B4	Q15427	424 aa	Known RBP eCLIP	8.81	□□□□□ -1	4e-40	■■■■■ 54
EIF4A1-233	ENST00000584784	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	9.69	□□□□□ -0.86	5e-38	■■□□□ 12.7
EIF4A1-233	ENST00000584784	NIPBL	Q6KC79	2804 aa	eCLIP	7.54	□□□□□ -1.2	3e-29	■□□□□ 10.1
EIF4A1-233	ENST00000584784	SF3A3	Q12874	501 aa	Known RBP eCLIP	9.08	□□□□□ -0.96	2e-21	■■■■□ 24.7
EIF4A1-233	ENST00000584784	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	10.24	□□□□□ -0.77	2e-20	■■■■■ 307.7
EIF4A1-233	ENST00000584784	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	9.69	□□□□□ -0.86	6e-20	■■□□□ 11.6
EIF4A1-233	ENST00000584784	RBM15	Q96T37	977 aa	Known RBP eCLIP	9.76	□□□□□ -0.85	2e-16	■□□□□ 9.3
EIF4A1-233	ENST00000584784	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	10.34	□□□□□ -0.75	1e-13	■■■■■ 32.1
EIF4A1-233	ENST00000584784	SND1	Q7KZF4	910 aa	Known RBP eCLIP	10.14	□□□□□ -0.79	7e-13	■□□□□ 10
EIF4A1-233	ENST00000584784	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	8.85	□□□□□ -0.99	9e-13	■■□□□ 14.5
EIF4A1-233	ENST00000584784	GTF2F1	P35269	517 aa	Known RBP eCLIP	9.98	□□□□□ -0.81	1e-12	■■■□□ 17.1
EIF4A1-233	ENST00000584784	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	10.35	□□□□□ -0.75	1e-11	■□□□□ 10.7
EIF4A1-233	ENST00000584784	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	10.49	□□□□□ -0.73	1e-11	■■□□□ 14.2
EIF4A1-233	ENST00000584784	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	8.85	□□□□□ -0.99	2e-11	■■■■□ 25.1
EIF4A1-233	ENST00000584784	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	8.14	□□□□□ -1.11	3e-11	■■■■■ 29.2
EIF4A1-233	ENST00000584784	HNRNPM	P52272	730 aa	Known RBP eCLIP	14.48	□□□□□ -0.09	7e-11	■■■■□ 19.9
EIF4A1-233	ENST00000584784	EWSR1	Q01844	656 aa	Known RBP eCLIP	7.59	□□□□□ -1.19	8e-11	■■■■□ 21.5
EIF4A1-233	ENST00000584784	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	10.08	□□□□□ -0.8	2e-10	■■■□□ 18.4
EIF4A1-233	ENST00000584784	YBX3	P16989	372 aa	Known RBP eCLIP	11.56	□□□□□ -0.56	3e-10	■□□□□ 9.7
EIF4A1-233	ENST00000584784	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	14.13	□□□□□ -0.15	4e-10	■□□□□ 11.1
EIF4A1-233	ENST00000584784	SF3B1	O75533	1304 aa	Known RBP eCLIP	10.35	□□□□□ -0.75	4e-10	■■■■■ 40.1
EIF4A1-233	ENST00000584784	TIA1	P31483	386 aa	Known RBP eCLIP	9.2	□□□□□ -0.94	4e-10	■■■□□ 14.8
EIF4A1-233	ENST00000584784	KHSRP	Q92945	711 aa	Known RBP eCLIP	10.06	□□□□□ -0.8	6e-10	■■■■■ 35.2
EIF4A1-233	ENST00000584784	G3BP1	Q13283	466 aa	Known RBP eCLIP	11.98	□□□□□ -0.49	6e-10	■■■□□ 15.1
EIF4A1-233	ENST00000584784	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	10.26	□□□□□ -0.77	6e-10	■■□□□ 12.3
EIF4A1-233	ENST00000584784	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	7.86	□□□□□ -1.15	8e-10	■■■■■ 27.1
EIF4A1-233	ENST00000584784	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	10.18	□□□□□ -0.78	1e-9	■■■■□ 25
EIF4A1-233	ENST00000584784	PCBP2	Q15366	365 aa	Known RBP eCLIP	9.41	□□□□□ -0.9	2e-9	■■■■□ 19.8
EIF4A1-233	ENST00000584784	RPS3	P23396	243 aa	Known RBP eCLIP	9.61	□□□□□ -0.87	4e-9	■■■■■ 27
EIF4A1-233	ENST00000584784	PRPF4	O43172	522 aa	Known RBP eCLIP	9.51	□□□□□ -0.89	5e-9	■■■■□ 20.8
EIF4A1-233	ENST00000584784	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	9.78	□□□□□ -0.84	5e-9	■■■■□ 21.8
EIF4A1-233	ENST00000584784	EFTUD2	Q15029	972 aa	Known RBP eCLIP	9.5	□□□□□ -0.89	6e-9	■■■□□ 19.2
EIF4A1-233	ENST00000584784	NONO	Q15233	471 aa	Known RBP eCLIP	11.05	□□□□□ -0.64	1e-8	■■■■■ 39.3
EIF4A1-233	ENST00000584784	U2AF1	Q01081	240 aa	Known RBP eCLIP	12.81	□□□□□ -0.36	1e-8	■■■■■ 28
EIF4A1-233	ENST00000584784	DDX3X	O00571	662 aa	Known RBP eCLIP	10.2	□□□□□ -0.78	1e-8	■■■■□ 23.1
EIF4A1-233	ENST00000584784	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	8.64	□□□□□ -1.03	2e-8	■□□□□ 10.5
EIF4A1-233	ENST00000584784	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	9.9	□□□□□ -0.82	4e-8	■■■□□ 16.8
EIF4A1-233	ENST00000584784	RBM22	Q9NW64	420 aa	Known RBP eCLIP	9.84	□□□□□ -0.83	4e-8	■■■■□ 26.5
EIF4A1-233	ENST00000584784	ZRANB2	O95218	330 aa	Known RBP eCLIP	10.06	□□□□□ -0.8	4e-8	■■■■□ 21.7
EIF4A1-233	ENST00000584784	TIAL1	Q01085	375 aa	Known RBP eCLIP	9.45	□□□□□ -0.9	5e-8	■■■□□ 16.5
EIF4A1-233	ENST00000584784	HNRNPC	P07910	306 aa	Known RBP eCLIP	7.59	□□□□□ -1.19	5e-8	■■■■□ 25.1
EIF4A1-233	ENST00000584784	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	9.91	□□□□□ -0.82	8e-8	■■■□□ 17.7
EIF4A1-233	ENST00000584784	RBM5	P52756	815 aa	Known RBP eCLIP	11.53	□□□□□ -0.56	8e-8	■■■■■ 29.4
EIF4A1-233	ENST00000584784	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.75	□□□□□ -0.53	8e-8	■■■□□ 18.8
EIF4A1-233	ENST00000584784	U2AF2	P26368	475 aa	Known RBP eCLIP	11.08	□□□□□ -0.64	8e-8	■■■□□ 17.3
EIF4A1-233	ENST00000584784	RBFOX2	O43251	390 aa	Known RBP eCLIP	7.89	□□□□□ -1.15	9e-8	■■■□□ 15.4
EIF4A1-233	ENST00000584784	LSM11	P83369	360 aa	Known RBP eCLIP	8.61	□□□□□ -1.03	2e-7	■■■■■ 29.7
EIF4A1-233	ENST00000584784	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	10.13	□□□□□ -0.79	2e-7	■■■□□ 18.5
EIF4A1-233	ENST00000584784	PUM1	Q14671	1186 aa	Known RBP eCLIP	9.16	□□□□□ -0.94	2e-7	■□□□□ 10.4
EIF4A1-233	ENST00000584784	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	10.09	□□□□□ -0.79	2e-7	■■□□□ 11.4
EIF4A1-233	ENST00000584784	AQR	O60306	1485 aa	Known RBP eCLIP	15.76	■□□□□ 0.11	2e-7	■■■■□ 20
EIF4A1-233	ENST00000584784	FUS	P35637	526 aa	Known RBP eCLIP	6.06	□□□□□ -1.44	3e-7	■■■■□ 19.5
EIF4A1-233	ENST00000584784	DDX6	P26196	483 aa	Known RBP eCLIP	10.15	□□□□□ -0.78	3e-7	■■□□□ 13.5
EIF4A1-233	ENST00000584784	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	10.74	□□□□□ -0.69	4e-7	■■■□□ 17.7
EIF4A1-233	ENST00000584784	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	11.38	□□□□□ -0.59	5e-7	■■■□□ 15.3
EIF4A1-233	ENST00000584784	DDX21	Q9NR30	783 aa	Known RBP eCLIP	12.33	□□□□□ -0.44	5e-7	■□□□□ 10.1
EIF4A1-233	ENST00000584784	NCBP2	P52298	156 aa	Known RBP eCLIP	9.08	□□□□□ -0.96	5e-7	■■□□□ 14.4
EIF4A1-233	ENST00000584784	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	9.74	□□□□□ -0.85	5e-7	■■■□□ 18.4
EIF4A1-233	ENST00000584784	FMR1	Q06787	632 aa	Known RBP eCLIP	11.09	□□□□□ -0.63	5e-7	■■□□□ 11.4
EIF4A1-233	ENST00000584784	FTO	Q9C0B1	505 aa	Known RBP eCLIP	10.84	□□□□□ -0.67	6e-7	■□□□□ 10.3
EIF4A1-233	ENST00000584784	SMNDC1	O75940	238 aa	Known RBP eCLIP	8.51	□□□□□ -1.05	6e-7	■■■■□ 23.1
EIF4A1-233	ENST00000584784	SFPQ	P23246	707 aa	Known RBP eCLIP	10.63	□□□□□ -0.71	6e-7	■■■■□ 22.5
EIF4A1-233	ENST00000584784	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	11.38	□□□□□ -0.59	6e-7	■■■■□ 26.5
EIF4A1-233	ENST00000584784	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.62	□□□□□ -0.23	6e-7	■□□□□ 9.9
EIF4A1-233	ENST00000584784	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	14.73	□□□□□ -0.05	6e-7	■■□□□ 14.4
EIF4A1-233	ENST00000584784	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	10.09	□□□□□ -0.79	8e-7	■■□□□ 13.6
EIF4A1-233	ENST00000584784	TBRG4	Q969Z0	631 aa	Known RBP eCLIP	9.71	□□□□□ -0.86	9e-7	■■■□□ 17.3
EIF4A1-233	ENST00000584784	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.09	□□□□□ -0.63	1e-6	■■□□□ 13.7
EIF4A1-233	ENST00000584784	DDX42	Q86XP3	938 aa	Known RBP eCLIP	10.12	□□□□□ -0.79	1e-6	■■■□□ 15.1
EIF4A1-233	ENST00000584784	XRCC6	P12956	609 aa	Known RBP eCLIP	10.87	□□□□□ -0.67	1e-6	■■■□□ 17.2
EIF4A1-233	ENST00000584784	CDC40	O60508	579 aa	Known RBP eCLIP	8.84	□□□□□ -0.99	2e-6	■■■□□ 16.1
EIF4A1-233	ENST00000584784	SUB1	P53999	127 aa	Known RBP eCLIP	7.73	□□□□□ -1.17	2e-6	■■□□□ 14.3
EIF4A1-233	ENST00000584784	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	14.66	□□□□□ -0.06	2e-6	■■■□□ 15.2
EIF4A1-233	ENST00000584784	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	9.23	□□□□□ -0.93	2e-6	■□□□□ 11.3
EIF4A1-233	ENST00000584784	NOLC1	Q14978	699 aa	Known RBP eCLIP	10.55	□□□□□ -0.72	3e-6	■■■□□ 16.9
EIF4A1-233	ENST00000584784	WRN	Q14191	1432 aa	Predicted RBP eCLIP	16.28	■□□□□ 0.2	3e-6	■■■■□ 21.9
EIF4A1-233	ENST00000584784	FXR2	P51116	673 aa	Known RBP eCLIP	10.92	□□□□□ -0.66	3e-6	■■■□□ 15.4
EIF4A1-233	ENST00000584784	TROVE2	P10155	538 aa	Known RBP eCLIP	9.36	□□□□□ -0.91	4e-6	■■□□□ 11.8
EIF4A1-233	ENST00000584784	TAF15	Q92804	592 aa	Known RBP eCLIP	7.53	□□□□□ -1.2	5e-6	■□□□□ 9.3
EIF4A1-233	ENST00000584784	NKRF	O15226	690 aa	Known RBP eCLIP	10.93	□□□□□ -0.66	5e-6	■□□□□ 8.5
EIF4A1-233	ENST00000584784	AARS	P49588	968 aa	Known RBP eCLIP	10.35	□□□□□ -0.75	7e-6	■■□□□ 13.7
EIF4A1-233	ENST00000584784	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	11.04	□□□□□ -0.64	8e-6	■■■□□ 18.6

Retrieved 90 of 90 RNA–protein pairs in 21 ms