RNA–Protein interactions for RNA: ENST00000583327.2

ITGB4-209, Transcript of integrin subunit beta 4, humanhuman

TSL 3

Gene ITGB4, Length 699 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-209ENST00000583327 NISCHQ9Y2I1 1504 aa32.3■■■□□ 2.76
ITGB4-209ENST00000583327 CCDC180Q9P1Z9 1646 aa28.4■■■□□ 2.14
ITGB4-209ENST00000583327 ABCC9O60706 1549 aa27.24■■□□□ 1.95
ITGB4-209ENST00000583327 ZCCHC6Q5VYS8 1495 aaKnown RBP27.01■■□□□ 1.91
ITGB4-209ENST00000583327 DCAF1Q9Y4B6 1507 aa26.8■■□□□ 1.88
ITGB4-209ENST00000583327 MYO15BQ96JP2 1530 aa26.71■■□□□ 1.87
ITGB4-209ENST00000583327 DCAF8L2P0C7V8 631 aa26.64■■□□□ 1.86
ITGB4-209ENST00000583327 NACADO15069 1562 aa26.62■■□□□ 1.85
ITGB4-209ENST00000583327 RB1CC1Q8TDY2 1594 aa26.46■■□□□ 1.83
ITGB4-209ENST00000583327 SCRIBQ14160 1630 aa25.91■■□□□ 1.74
ITGB4-209ENST00000583327 UNC13AQ9UPW8 1703 aa25.85■■□□□ 1.73
ITGB4-209ENST00000583327 SHROOM4Q9ULL8 1493 aa25.74■■□□□ 1.71
ITGB4-209ENST00000583327 BICRAQ9NZM4 1560 aa25.72■■□□□ 1.71
ITGB4-209ENST00000583327 PABPN1Q86U42 306 aaKnown RBP eCLIP25.58■■□□□ 1.69
ITGB4-209ENST00000583327 CECR2Q9BXF3 1484 aa25.1■■□□□ 1.61
ITGB4-209ENST00000583327 BAZ1AQ9NRL2 1556 aaPredicted RBP24.95■■□□□ 1.58
ITGB4-209ENST00000583327 EIF4G1Q04637 1599 aaKnown RBP24.94■■□□□ 1.58
ITGB4-209ENST00000583327 SMARCA4P51532 1647 aa24.9■■□□□ 1.58
ITGB4-209ENST00000583327 MROH2BQ7Z745 1585 aa24.89■■□□□ 1.58
ITGB4-209ENST00000583327 RSF1Q96T23 1441 aaPredicted RBP24.84■■□□□ 1.57
ITGB4-209ENST00000583327 PEG3Q9GZU2 1588 aa24.71■■□□□ 1.55
ITGB4-209ENST00000583327 CC2D2AQ9P2K1 1620 aa24.68■■□□□ 1.54
ITGB4-209ENST00000583327 ATAD2BQ9ULI0 1458 aa24.67■■□□□ 1.54
ITGB4-209ENST00000583327 DNAJC5BQ9UF47 199 aa24.63■■□□□ 1.53
ITGB4-209ENST00000583327 SMARCA2P51531 1590 aa24.62■■□□□ 1.53
ITGB4-209ENST00000583327 NCAPD3P42695 1498 aa24.61■■□□□ 1.53
ITGB4-209ENST00000583327 WIZO95785 1651 aa24.61■■□□□ 1.53
ITGB4-209ENST00000583327 SUPT5HO00267 1087 aaKnown RBP24.52■■□□□ 1.52
ITGB4-209ENST00000583327 HMGXB3Q12766 1538 aa24.47■■□□□ 1.51
ITGB4-209ENST00000583327 BAZ1BQ9UIG0 1483 aaKnown RBP24.43■■□□□ 1.5
ITGB4-209ENST00000583327 TOP2AP11388 1531 aaKnown RBP24.39■■□□□ 1.49
ITGB4-209ENST00000583327 CCDC88BA6NC98 1476 aa24.14■■□□□ 1.46
ITGB4-209ENST00000583327 CADPSQ9ULU8 1353 aa23.9■■□□□ 1.42
ITGB4-209ENST00000583327 CFTRP13569 1480 aa23.87■■□□□ 1.41
ITGB4-209ENST00000583327 LAMC3Q9Y6N6 1575 aa23.8■■□□□ 1.4
ITGB4-209ENST00000583327 NESP48681 1621 aa23.77■■□□□ 1.4
ITGB4-209ENST00000583327 PDS5BQ9NTI5 1447 aa23.62■■□□□ 1.37
ITGB4-209ENST00000583327 PRDM2Q13029 1718 aa23.62■■□□□ 1.37
ITGB4-209ENST00000583327 FANCD2Q9BXW9 1451 aa23.57■■□□□ 1.36
ITGB4-209ENST00000583327 CEP164Q9UPV0 1460 aa23.46■■□□□ 1.35
ITGB4-209ENST00000583327 KIF21AQ7Z4S6 1674 aa23.44■■□□□ 1.34
ITGB4-209ENST00000583327 ERCC6Q03468 1493 aa23.38■■□□□ 1.33
ITGB4-209ENST00000583327 ABCC8Q09428 1581 aa23.35■■□□□ 1.33
ITGB4-209ENST00000583327 WRNQ14191 1432 aaPredicted RBP eCLIP23.35■■□□□ 1.33
ITGB4-209ENST00000583327 MRC2Q9UBG0 1479 aa23.32■■□□□ 1.32
ITGB4-209ENST00000583327 CHIC1Q5VXU3 224 aa23.32■■□□□ 1.32
ITGB4-209ENST00000583327 URB2Q14146 1524 aaKnown RBP23.32■■□□□ 1.32
ITGB4-209ENST00000583327 CUX1P39880 1505 aa23.31■■□□□ 1.32
ITGB4-209ENST00000583327 THOC2Q8NI27 1593 aaKnown RBP23.27■■□□□ 1.32
ITGB4-209ENST00000583327 TOPBP1Q92547 1522 aa23.27■■□□□ 1.32
ITGB4-209ENST00000583327 DNMBPQ6XZF7 1577 aa23.27■■□□□ 1.32
ITGB4-209ENST00000583327 WDR62O43379 1518 aa23.25■■□□□ 1.31
ITGB4-209ENST00000583327 SYNJ1O43426 1573 aa23.25■■□□□ 1.31
ITGB4-209ENST00000583327 TOP2BQ02880 1626 aa23.24■■□□□ 1.31
ITGB4-209ENST00000583327 BIVM-ERCC5R4GMW8 1640 aa23.22■■□□□ 1.31
ITGB4-209ENST00000583327 TRIM41Q8WV44 630 aa23.17■■□□□ 1.3
ITGB4-209ENST00000583327 POLA1P09884 1462 aaPredicted RBP23.11■■□□□ 1.29
ITGB4-209ENST00000583327 FGD5Q6ZNL6 1462 aa23.11■■□□□ 1.29
ITGB4-209ENST00000583327 CUX2O14529 1486 aa23.07■■□□□ 1.28
ITGB4-209ENST00000583327 SOGA1O94964 1423 aa23.03■■□□□ 1.28
ITGB4-209ENST00000583327 RAD54L2Q9Y4B4 1467 aa22.99■■□□□ 1.27
ITGB4-209ENST00000583327 TARBP1Q13395 1621 aaKnown RBP22.99■■□□□ 1.27
ITGB4-209ENST00000583327 IFT140Q96RY7 1462 aa22.98■■□□□ 1.27
ITGB4-209ENST00000583327 ABCA10Q8WWZ4 1543 aa22.96■■□□□ 1.27
ITGB4-209ENST00000583327 WDR97A6NE52 1622 aa22.89■■□□□ 1.25
ITGB4-209ENST00000583327 ZNF608Q9ULD9 1512 aaPredicted RBP22.83■■□□□ 1.25
ITGB4-209ENST00000583327 TDRD9Q8NDG6 1382 aaKnown RBP22.82■■□□□ 1.24
ITGB4-209ENST00000583327 RUSC2Q8N2Y8 1516 aa22.82■■□□□ 1.24
ITGB4-209ENST00000583327 KIF27Q86VH2 1401 aa22.81■■□□□ 1.24
ITGB4-209ENST00000583327 ABCA5Q8WWZ7 1642 aa22.79■■□□□ 1.24
ITGB4-209ENST00000583327 AQRO60306 1485 aaKnown RBP eCLIP22.78■■□□□ 1.24
ITGB4-209ENST00000583327 EEA1Q15075 1411 aa22.77■■□□□ 1.24
ITGB4-209ENST00000583327 GAPVD1Q14C86 1478 aa22.76■■□□□ 1.23
ITGB4-209ENST00000583327 IGF1RP08069 1367 aa22.74■■□□□ 1.23
ITGB4-209ENST00000583327 EIF4G3O43432 1585 aaKnown RBP22.71■■□□□ 1.23
ITGB4-209ENST00000583327 GRIN2BQ13224 1484 aa22.68■■□□□ 1.22
ITGB4-209ENST00000583327 CSRNP3Q8WYN3 585 aa22.68■■□□□ 1.22
ITGB4-209ENST00000583327 ERICH3Q5RHP9 1530 aa22.67■■□□□ 1.22
ITGB4-209ENST00000583327 FAM9AQ8IZU1 332 aaPredicted RBP22.62■■□□□ 1.21
ITGB4-209ENST00000583327 PBRM1Q86U86 1689 aa22.6■■□□□ 1.21
ITGB4-209ENST00000583327 PRXQ9BXM0 1461 aa22.58■■□□□ 1.2
ITGB4-209ENST00000583327 MAGI1Q96QZ7 1491 aaPredicted RBP22.56■■□□□ 1.2
ITGB4-209ENST00000583327 CARMIL1Q5VZK9 1371 aa22.55■■□□□ 1.2
ITGB4-209ENST00000583327 SNAPC4Q5SXM2 1469 aa22.54■■□□□ 1.2
ITGB4-209ENST00000583327 FHAD1B1AJZ9 1412 aa22.53■■□□□ 1.2
ITGB4-209ENST00000583327 CUL7Q14999 1698 aa22.52■■□□□ 1.2
ITGB4-209ENST00000583327 ADAMTS12P58397 1594 aa22.5■■□□□ 1.19
ITGB4-209ENST00000583327 SYNJ2O15056 1496 aa22.47■■□□□ 1.19
ITGB4-209ENST00000583327 RAPGEF2Q9Y4G8 1499 aa22.47■■□□□ 1.19
ITGB4-209ENST00000583327 KIF21BO75037 1637 aa22.46■■□□□ 1.19
ITGB4-209ENST00000583327 CHMP7Q8WUX9 453 aaPredicted RBP22.39■■□□□ 1.17
ITGB4-209ENST00000583327 GRIN2AQ12879 1464 aa22.38■■□□□ 1.17
ITGB4-209ENST00000583327 GOLGA3Q08378 1498 aa22.36■■□□□ 1.17
ITGB4-209ENST00000583327 LOC105371045A0A1W2PR82 267 aa22.34■■□□□ 1.17
ITGB4-209ENST00000583327 FBLN2P98095 1184 aa22.31■■□□□ 1.16
ITGB4-209ENST00000583327 NUP160Q12769 1436 aa22.31■■□□□ 1.16
ITGB4-209ENST00000583327 CHD1O14646 1710 aa22.28■■□□□ 1.16
ITGB4-209ENST00000583327 TNIKQ9UKE5 1360 aa22.25■■□□□ 1.15
ITGB4-209ENST00000583327 CEP170Q5SW79 1584 aa22.25■■□□□ 1.15
ITGB4-209ENST00000583327 UBTFP17480 764 aaKnown RBP22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms