RNA–Protein interactions for RNA: ENST00000582629.1

ITGB4-208, Transcript of integrin subunit beta 4, humanhuman

TSL 3

Gene ITGB4, Length 458 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-208ENST00000582629 NISCHQ9Y2I1 1504 aa36.29■■■■□ 3.4
ITGB4-208ENST00000582629 CCDC180Q9P1Z9 1646 aa32.6■■■□□ 2.81
ITGB4-208ENST00000582629 ABCC9O60706 1549 aa32.5■■■□□ 2.79
ITGB4-208ENST00000582629 RB1CC1Q8TDY2 1594 aa31■■■□□ 2.55
ITGB4-208ENST00000582629 NACADO15069 1562 aa30.79■■■□□ 2.52
ITGB4-208ENST00000582629 DCAF8L2P0C7V8 631 aa30.54■■■□□ 2.48
ITGB4-208ENST00000582629 DNAJC5BQ9UF47 199 aa30.41■■■□□ 2.46
ITGB4-208ENST00000582629 MYO15BQ96JP2 1530 aa30.39■■■□□ 2.46
ITGB4-208ENST00000582629 UNC13AQ9UPW8 1703 aa30.3■■■□□ 2.44
ITGB4-208ENST00000582629 PABPN1Q86U42 306 aaKnown RBP eCLIP30.22■■■□□ 2.43
ITGB4-208ENST00000582629 ZCCHC6Q5VYS8 1495 aaKnown RBP30.09■■■□□ 2.41
ITGB4-208ENST00000582629 BICRAQ9NZM4 1560 aa30.07■■■□□ 2.4
ITGB4-208ENST00000582629 DCAF1Q9Y4B6 1507 aa30.01■■■□□ 2.39
ITGB4-208ENST00000582629 SHROOM4Q9ULL8 1493 aa29.73■■■□□ 2.35
ITGB4-208ENST00000582629 SCRIBQ14160 1630 aa29.65■■■□□ 2.34
ITGB4-208ENST00000582629 CC2D2AQ9P2K1 1620 aa29.39■■■□□ 2.3
ITGB4-208ENST00000582629 EIF4G1Q04637 1599 aaKnown RBP29.34■■■□□ 2.29
ITGB4-208ENST00000582629 CECR2Q9BXF3 1484 aa29.29■■■□□ 2.28
ITGB4-208ENST00000582629 NCAPD3P42695 1498 aa28.4■■■□□ 2.14
ITGB4-208ENST00000582629 ATAD2BQ9ULI0 1458 aa28.32■■■□□ 2.12
ITGB4-208ENST00000582629 SMARCA4P51532 1647 aa28.31■■■□□ 2.12
ITGB4-208ENST00000582629 SMARCA2P51531 1590 aa28.27■■■□□ 2.12
ITGB4-208ENST00000582629 HMGXB3Q12766 1538 aa28.22■■■□□ 2.11
ITGB4-208ENST00000582629 BAZ1AQ9NRL2 1556 aaPredicted RBP28.18■■■□□ 2.1
ITGB4-208ENST00000582629 ERCC6Q03468 1493 aa28.08■■■□□ 2.09
ITGB4-208ENST00000582629 PEG3Q9GZU2 1588 aa28.05■■■□□ 2.08
ITGB4-208ENST00000582629 BAZ1BQ9UIG0 1483 aaKnown RBP28.05■■■□□ 2.08
ITGB4-208ENST00000582629 CUX2O14529 1486 aa28.04■■■□□ 2.08
ITGB4-208ENST00000582629 DNAJC5Q9H3Z4 198 aa27.94■■■□□ 2.06
ITGB4-208ENST00000582629 MROH2BQ7Z745 1585 aa27.94■■■□□ 2.06
ITGB4-208ENST00000582629 NESP48681 1621 aa27.92■■■□□ 2.06
ITGB4-208ENST00000582629 LAMC3Q9Y6N6 1575 aa27.78■■■□□ 2.04
ITGB4-208ENST00000582629 THOC2Q8NI27 1593 aaKnown RBP27.69■■■□□ 2.02
ITGB4-208ENST00000582629 WIZO95785 1651 aa27.62■■■□□ 2.01
ITGB4-208ENST00000582629 KIF21AQ7Z4S6 1674 aa27.61■■■□□ 2.01
ITGB4-208ENST00000582629 PDS5BQ9NTI5 1447 aa27.6■■■□□ 2.01
ITGB4-208ENST00000582629 CADPSQ9ULU8 1353 aa27.53■■■□□ 2
ITGB4-208ENST00000582629 MRC2Q9UBG0 1479 aa27.37■■□□□ 1.97
ITGB4-208ENST00000582629 RSF1Q96T23 1441 aaPredicted RBP27.36■■□□□ 1.97
ITGB4-208ENST00000582629 WDR62O43379 1518 aa27.31■■□□□ 1.96
ITGB4-208ENST00000582629 TOP2AP11388 1531 aaKnown RBP27.3■■□□□ 1.96
ITGB4-208ENST00000582629 CEP164Q9UPV0 1460 aa27.26■■□□□ 1.95
ITGB4-208ENST00000582629 CFTRP13569 1480 aa27.23■■□□□ 1.95
ITGB4-208ENST00000582629 FANCD2Q9BXW9 1451 aa27.22■■□□□ 1.95
ITGB4-208ENST00000582629 PRDM2Q13029 1718 aa27.04■■□□□ 1.92
ITGB4-208ENST00000582629 URB2Q14146 1524 aaKnown RBP26.99■■□□□ 1.91
ITGB4-208ENST00000582629 CCDC88BA6NC98 1476 aa26.95■■□□□ 1.91
ITGB4-208ENST00000582629 IFT140Q96RY7 1462 aa26.73■■□□□ 1.87
ITGB4-208ENST00000582629 TOPBP1Q92547 1522 aa26.72■■□□□ 1.87
ITGB4-208ENST00000582629 OSCARQ8IYS5 282 aa26.72■■□□□ 1.87
ITGB4-208ENST00000582629 TRIM41Q8WV44 630 aa26.71■■□□□ 1.87
ITGB4-208ENST00000582629 ABCC8Q09428 1581 aa26.69■■□□□ 1.86
ITGB4-208ENST00000582629 DNMBPQ6XZF7 1577 aa26.64■■□□□ 1.86
ITGB4-208ENST00000582629 ZNF608Q9ULD9 1512 aaPredicted RBP26.64■■□□□ 1.85
ITGB4-208ENST00000582629 EIF4G3O43432 1585 aaKnown RBP26.54■■□□□ 1.84
ITGB4-208ENST00000582629 TARBP1Q13395 1621 aaKnown RBP26.48■■□□□ 1.83
ITGB4-208ENST00000582629 POLA1P09884 1462 aaPredicted RBP26.44■■□□□ 1.82
ITGB4-208ENST00000582629 RIMBP3CA6NJZ7 1639 aa26.4■■□□□ 1.82
ITGB4-208ENST00000582629 RIMBP3BA6NNM3 1639 aa26.4■■□□□ 1.82
ITGB4-208ENST00000582629 RIMBP3Q9UFD9 1639 aa26.4■■□□□ 1.82
ITGB4-208ENST00000582629 AQRO60306 1485 aaKnown RBP eCLIP26.4■■□□□ 1.82
ITGB4-208ENST00000582629 CHD1O14646 1710 aa26.34■■□□□ 1.81
ITGB4-208ENST00000582629 RAD54L2Q9Y4B4 1467 aa26.32■■□□□ 1.8
ITGB4-208ENST00000582629 ARHGEF11O15085 1522 aa26.32■■□□□ 1.8
ITGB4-208ENST00000582629 SOGA1O94964 1423 aa26.31■■□□□ 1.8
ITGB4-208ENST00000582629 FGD5Q6ZNL6 1462 aa26.28■■□□□ 1.8
ITGB4-208ENST00000582629 WDR97A6NE52 1622 aa26.27■■□□□ 1.8
ITGB4-208ENST00000582629 CUX1P39880 1505 aa26.25■■□□□ 1.79
ITGB4-208ENST00000582629 TDRD9Q8NDG6 1382 aaKnown RBP26.22■■□□□ 1.79
ITGB4-208ENST00000582629 FBLN2P98095 1184 aa26.2■■□□□ 1.78
ITGB4-208ENST00000582629 SNAPC4Q5SXM2 1469 aa26.16■■□□□ 1.78
ITGB4-208ENST00000582629 SUPT5HO00267 1087 aaKnown RBP26.13■■□□□ 1.77
ITGB4-208ENST00000582629 MAGI1Q96QZ7 1491 aaPredicted RBP26.11■■□□□ 1.77
ITGB4-208ENST00000582629 GRIN2BQ13224 1484 aa26.1■■□□□ 1.77
ITGB4-208ENST00000582629 CYB5RLQ6IPT4 315 aa26.08■■□□□ 1.77
ITGB4-208ENST00000582629 ARAP1Q96P48 1450 aa26.05■■□□□ 1.76
ITGB4-208ENST00000582629 CHMP7Q8WUX9 453 aaPredicted RBP26.04■■□□□ 1.76
ITGB4-208ENST00000582629 SYNJ1O43426 1573 aa26.03■■□□□ 1.76
ITGB4-208ENST00000582629 PBRM1Q86U86 1689 aa26.03■■□□□ 1.76
ITGB4-208ENST00000582629 CLASP1Q7Z460 1538 aa26.03■■□□□ 1.76
ITGB4-208ENST00000582629 SYNJ2O15056 1496 aa26.01■■□□□ 1.75
ITGB4-208ENST00000582629 GAPVD1Q14C86 1478 aa26■■□□□ 1.75
ITGB4-208ENST00000582629 ABCA10Q8WWZ4 1543 aa25.99■■□□□ 1.75
ITGB4-208ENST00000582629 ABCA5Q8WWZ7 1642 aa25.97■■□□□ 1.75
ITGB4-208ENST00000582629 BIVM-ERCC5R4GMW8 1640 aa25.88■■□□□ 1.73
ITGB4-208ENST00000582629 WRNQ14191 1432 aaPredicted RBP eCLIP25.88■■□□□ 1.73
ITGB4-208ENST00000582629 TOP2BQ02880 1626 aa25.86■■□□□ 1.73
ITGB4-208ENST00000582629 TRHP20396 242 aaPredicted RBP25.77■■□□□ 1.72
ITGB4-208ENST00000582629 GRIN2AQ12879 1464 aa25.77■■□□□ 1.72
ITGB4-208ENST00000582629 ADAMTS12P58397 1594 aa25.77■■□□□ 1.72
ITGB4-208ENST00000582629 ERICH3Q5RHP9 1530 aa25.68■■□□□ 1.7
ITGB4-208ENST00000582629 FHAD1B1AJZ9 1412 aa25.68■■□□□ 1.7
ITGB4-208ENST00000582629 NUP160Q12769 1436 aa25.68■■□□□ 1.7
ITGB4-208ENST00000582629 CEP170Q5SW79 1584 aa25.67■■□□□ 1.7
ITGB4-208ENST00000582629 ERCC6L2Q5T890 1561 aa25.59■■□□□ 1.69
ITGB4-208ENST00000582629 SHROOM2Q13796 1616 aa25.58■■□□□ 1.69
ITGB4-208ENST00000582629 RUSC2Q8N2Y8 1516 aa25.41■■□□□ 1.66
ITGB4-208ENST00000582629 PRG4Q92954 1404 aaPredicted RBP25.4■■□□□ 1.66
ITGB4-208ENST00000582629 JPH4Q96JJ6 628 aa25.38■■□□□ 1.65
ITGB4-208ENST00000582629 KIF27Q86VH2 1401 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms