RNA–Protein interactions for RNA: ENST00000581655.1

CSNK1D-218, Transcript of casein kinase 1 delta, humanhuman

TSL 4

Gene CSNK1D, Length 549 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-218ENST00000581655 NISCHQ9Y2I1 1504 aa32.36■■■□□ 2.77
CSNK1D-218ENST00000581655 ABCC9O60706 1549 aa29.92■■■□□ 2.38
CSNK1D-218ENST00000581655 CCDC180Q9P1Z9 1646 aa29.28■■■□□ 2.28
CSNK1D-218ENST00000581655 DNAJC5BQ9UF47 199 aa28.6■■■□□ 2.17
CSNK1D-218ENST00000581655 RB1CC1Q8TDY2 1594 aa28.18■■■□□ 2.1
CSNK1D-218ENST00000581655 NACADO15069 1562 aa27.83■■■□□ 2.05
CSNK1D-218ENST00000581655 PABPN1Q86U42 306 aaKnown RBP eCLIP27.77■■■□□ 2.04
CSNK1D-218ENST00000581655 DCAF8L2P0C7V8 631 aa27.62■■■□□ 2.01
CSNK1D-218ENST00000581655 UNC13AQ9UPW8 1703 aa27.57■■■□□ 2
CSNK1D-218ENST00000581655 BICRAQ9NZM4 1560 aa27.39■■□□□ 1.98
CSNK1D-218ENST00000581655 MYO15BQ96JP2 1530 aa27.23■■□□□ 1.95
CSNK1D-218ENST00000581655 CECR2Q9BXF3 1484 aa27■■□□□ 1.91
CSNK1D-218ENST00000581655 CC2D2AQ9P2K1 1620 aa26.98■■□□□ 1.91
CSNK1D-218ENST00000581655 SHROOM4Q9ULL8 1493 aa26.92■■□□□ 1.9
CSNK1D-218ENST00000581655 EIF4G1Q04637 1599 aaKnown RBP26.77■■□□□ 1.88
CSNK1D-218ENST00000581655 SCRIBQ14160 1630 aa26.68■■□□□ 1.86
CSNK1D-218ENST00000581655 ZCCHC6Q5VYS8 1495 aaKnown RBP26.68■■□□□ 1.86
CSNK1D-218ENST00000581655 DNAJC5Q9H3Z4 198 aa26.67■■□□□ 1.86
CSNK1D-218ENST00000581655 DCAF1Q9Y4B6 1507 aa26.66■■□□□ 1.86
CSNK1D-218ENST00000581655 CUX2O14529 1486 aa26■■□□□ 1.75
CSNK1D-218ENST00000581655 ERCC6Q03468 1493 aa25.86■■□□□ 1.73
CSNK1D-218ENST00000581655 NCAPD3P42695 1498 aa25.7■■□□□ 1.7
CSNK1D-218ENST00000581655 ATAD2BQ9ULI0 1458 aa25.56■■□□□ 1.68
CSNK1D-218ENST00000581655 NESP48681 1621 aa25.53■■□□□ 1.68
CSNK1D-218ENST00000581655 HMGXB3Q12766 1538 aa25.46■■□□□ 1.67
CSNK1D-218ENST00000581655 SMARCA2P51531 1590 aa25.44■■□□□ 1.66
CSNK1D-218ENST00000581655 SMARCA4P51532 1647 aa25.38■■□□□ 1.65
CSNK1D-218ENST00000581655 THOC2Q8NI27 1593 aaKnown RBP25.38■■□□□ 1.65
CSNK1D-218ENST00000581655 TRIM41Q8WV44 630 aa25.3■■□□□ 1.64
CSNK1D-218ENST00000581655 BAZ1BQ9UIG0 1483 aaKnown RBP25.28■■□□□ 1.64
CSNK1D-218ENST00000581655 LAMC3Q9Y6N6 1575 aa25.22■■□□□ 1.63
CSNK1D-218ENST00000581655 KIF21AQ7Z4S6 1674 aa25.17■■□□□ 1.62
CSNK1D-218ENST00000581655 BAZ1AQ9NRL2 1556 aaPredicted RBP25.16■■□□□ 1.62
CSNK1D-218ENST00000581655 PEG3Q9GZU2 1588 aa25.11■■□□□ 1.61
CSNK1D-218ENST00000581655 PDS5BQ9NTI5 1447 aa25.1■■□□□ 1.61
CSNK1D-218ENST00000581655 MROH2BQ7Z745 1585 aa24.95■■□□□ 1.58
CSNK1D-218ENST00000581655 MRC2Q9UBG0 1479 aa24.93■■□□□ 1.58
CSNK1D-218ENST00000581655 CADPSQ9ULU8 1353 aa24.91■■□□□ 1.58
CSNK1D-218ENST00000581655 WDR62O43379 1518 aa24.88■■□□□ 1.57
CSNK1D-218ENST00000581655 OSCARQ8IYS5 282 aa24.72■■□□□ 1.55
CSNK1D-218ENST00000581655 CEP164Q9UPV0 1460 aa24.71■■□□□ 1.55
CSNK1D-218ENST00000581655 FANCD2Q9BXW9 1451 aa24.64■■□□□ 1.53
CSNK1D-218ENST00000581655 WIZO95785 1651 aa24.62■■□□□ 1.53
CSNK1D-218ENST00000581655 CFTRP13569 1480 aa24.49■■□□□ 1.51
CSNK1D-218ENST00000581655 RIMBP3CA6NJZ7 1639 aa24.48■■□□□ 1.51
CSNK1D-218ENST00000581655 RIMBP3BA6NNM3 1639 aa24.48■■□□□ 1.51
CSNK1D-218ENST00000581655 URB2Q14146 1524 aaKnown RBP24.48■■□□□ 1.51
CSNK1D-218ENST00000581655 RIMBP3Q9UFD9 1639 aa24.48■■□□□ 1.51
CSNK1D-218ENST00000581655 ARHGEF11O15085 1522 aa24.34■■□□□ 1.49
CSNK1D-218ENST00000581655 ZNF608Q9ULD9 1512 aaPredicted RBP24.28■■□□□ 1.48
CSNK1D-218ENST00000581655 TOP2AP11388 1531 aaKnown RBP24.25■■□□□ 1.47
CSNK1D-218ENST00000581655 IFT140Q96RY7 1462 aa24.23■■□□□ 1.47
CSNK1D-218ENST00000581655 CYB5RLQ6IPT4 315 aa24.21■■□□□ 1.47
CSNK1D-218ENST00000581655 RSF1Q96T23 1441 aaPredicted RBP24.2■■□□□ 1.46
CSNK1D-218ENST00000581655 PRDM2Q13029 1718 aa24.2■■□□□ 1.46
CSNK1D-218ENST00000581655 TRHP20396 242 aaPredicted RBP24.14■■□□□ 1.45
CSNK1D-218ENST00000581655 TOPBP1Q92547 1522 aa24.1■■□□□ 1.45
CSNK1D-218ENST00000581655 EIF4G3O43432 1585 aaKnown RBP24.1■■□□□ 1.45
CSNK1D-218ENST00000581655 ARAP1Q96P48 1450 aa24.07■■□□□ 1.44
CSNK1D-218ENST00000581655 CHD1O14646 1710 aa24.05■■□□□ 1.44
CSNK1D-218ENST00000581655 CCDC88BA6NC98 1476 aa23.99■■□□□ 1.43
CSNK1D-218ENST00000581655 AQRO60306 1485 aaKnown RBP eCLIP23.98■■□□□ 1.43
CSNK1D-218ENST00000581655 ABCC8Q09428 1581 aa23.98■■□□□ 1.43
CSNK1D-218ENST00000581655 FBLN2P98095 1184 aa23.96■■□□□ 1.43
CSNK1D-218ENST00000581655 DNMBPQ6XZF7 1577 aa23.95■■□□□ 1.43
CSNK1D-218ENST00000581655 TARBP1Q13395 1621 aaKnown RBP23.93■■□□□ 1.42
CSNK1D-218ENST00000581655 AEBP2Q6ZN18 517 aaPredicted RBP23.87■■□□□ 1.41
CSNK1D-218ENST00000581655 POLA1P09884 1462 aaPredicted RBP23.81■■□□□ 1.4
CSNK1D-218ENST00000581655 RAD54L2Q9Y4B4 1467 aa23.75■■□□□ 1.39
CSNK1D-218ENST00000581655 TDRD9Q8NDG6 1382 aaKnown RBP23.75■■□□□ 1.39
CSNK1D-218ENST00000581655 CLASP1Q7Z460 1538 aa23.74■■□□□ 1.39
CSNK1D-218ENST00000581655 SNAPC4Q5SXM2 1469 aa23.72■■□□□ 1.39
CSNK1D-218ENST00000581655 SOGA1O94964 1423 aa23.69■■□□□ 1.38
CSNK1D-218ENST00000581655 SYNJ1O43426 1573 aa23.67■■□□□ 1.38
CSNK1D-218ENST00000581655 CHMP7Q8WUX9 453 aaPredicted RBP23.66■■□□□ 1.38
CSNK1D-218ENST00000581655 WDR97A6NE52 1622 aa23.61■■□□□ 1.37
CSNK1D-218ENST00000581655 MAGI1Q96QZ7 1491 aaPredicted RBP23.61■■□□□ 1.37
CSNK1D-218ENST00000581655 FGD5Q6ZNL6 1462 aa23.59■■□□□ 1.37
CSNK1D-218ENST00000581655 GRIN2BQ13224 1484 aa23.56■■□□□ 1.36
CSNK1D-218ENST00000581655 GAPVD1Q14C86 1478 aa23.55■■□□□ 1.36
CSNK1D-218ENST00000581655 SYNJ2O15056 1496 aa23.54■■□□□ 1.36
CSNK1D-218ENST00000581655 CUX1P39880 1505 aa23.47■■□□□ 1.35
CSNK1D-218ENST00000581655 PBRM1Q86U86 1689 aa23.43■■□□□ 1.34
CSNK1D-218ENST00000581655 ERCC6L2Q5T890 1561 aa23.35■■□□□ 1.33
CSNK1D-218ENST00000581655 ABCA5Q8WWZ7 1642 aa23.3■■□□□ 1.32
CSNK1D-218ENST00000581655 ABCA10Q8WWZ4 1543 aa23.27■■□□□ 1.32
CSNK1D-218ENST00000581655 GRIN2AQ12879 1464 aa23.25■■□□□ 1.31
CSNK1D-218ENST00000581655 CEP170Q5SW79 1584 aa23.25■■□□□ 1.31
CSNK1D-218ENST00000581655 KIF13AQ9H1H9 1805 aa23.21■■□□□ 1.31
CSNK1D-218ENST00000581655 NUP160Q12769 1436 aa23.19■■□□□ 1.3
CSNK1D-218ENST00000581655 ADAMTS12P58397 1594 aa23.17■■□□□ 1.3
CSNK1D-218ENST00000581655 SHROOM2Q13796 1616 aa23.15■■□□□ 1.3
CSNK1D-218ENST00000581655 FHAD1B1AJZ9 1412 aa23.08■■□□□ 1.28
CSNK1D-218ENST00000581655 WRNQ14191 1432 aaPredicted RBP eCLIP23.06■■□□□ 1.285e-6■■■■■ 38.2
CSNK1D-218ENST00000581655 PRG4Q92954 1404 aaPredicted RBP23.03■■□□□ 1.28
CSNK1D-218ENST00000581655 FAM69CQ0P6D2 419 aa23.02■■□□□ 1.28
CSNK1D-218ENST00000581655 ABCC10Q5T3U5 1492 aa22.99■■□□□ 1.27
CSNK1D-218ENST00000581655 JPH4Q96JJ6 628 aa22.97■■□□□ 1.27
CSNK1D-218ENST00000581655 ERICH3Q5RHP9 1530 aa22.96■■□□□ 1.27
CSNK1D-218ENST00000581655 KDM4FA0A1W2PPD8 638 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms