RNA–Protein interactions for RNA: ENST00000581093.1

SENP3-206, Transcript of SUMO specific peptidase 3, humanhuman

TSL 5

Gene SENP3, Length 493 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-206ENST00000581093 AEBP2Q6ZN18 517 aaPredicted RBP21.9■■□□□ 1.1
SENP3-206ENST00000581093 CHIC1Q5VXU3 224 aa20.43■□□□□ 0.86
SENP3-206ENST00000581093 SENP3Q9H4L4 574 aaPredicted RBP18.82■□□□□ 0.6
SENP3-206ENST00000581093 PHF23Q9BUL5 403 aaPredicted RBP18.43■□□□□ 0.54
SENP3-206ENST00000581093 POTEDQ86YR6 584 aa18.16■□□□□ 0.5
SENP3-206ENST00000581093 FOXD1Q16676 465 aa17.66■□□□□ 0.42
SENP3-206ENST00000581093 MSH5O43196 834 aa16.9■□□□□ 0.3
SENP3-206ENST00000581093 PIAS4Q8N2W9 510 aaPredicted RBP16.3■□□□□ 0.2
SENP3-206ENST00000581093 PPP6R1Q9UPN7 881 aa15.77■□□□□ 0.12
SENP3-206ENST00000581093 ADRA2BP18089 450 aa15.67■□□□□ 0.1
SENP3-206ENST00000581093 PLPPR3Q6T4P5 718 aa15.41■□□□□ 0.06
SENP3-206ENST00000581093 CACNB1Q02641 598 aaPredicted RBP15.11■□□□□ 0.01
SENP3-206ENST00000581093 NISCHQ9Y2I1 1504 aa15.01□□□□□ -0.01
SENP3-206ENST00000581093 DMRT2Q9Y5R5 561 aa14.76□□□□□ -0.05
SENP3-206ENST00000581093 MAPK8IP2Q13387 824 aaPredicted RBP14.69□□□□□ -0.06
SENP3-206ENST00000581093 ABCC9O60706 1549 aa14.4□□□□□ -0.1
SENP3-206ENST00000581093 RNF39Q9H2S5 420 aa14.33□□□□□ -0.12
SENP3-206ENST00000581093 SCAF1Q9H7N4 1312 aaKnown RBP14.3□□□□□ -0.12
SENP3-206ENST00000581093 DCAF8L1A6NGE4 600 aa14.27□□□□□ -0.13
SENP3-206ENST00000581093 DNAJC5BQ9UF47 199 aa14.13□□□□□ -0.15
SENP3-206ENST00000581093 C1QBPQ07021 282 aaKnown RBP14.05□□□□□ -0.16
SENP3-206ENST00000581093 POTEHQ6S545 545 aa14.04□□□□□ -0.16
SENP3-206ENST00000581093 HOXD11P31277 338 aaPredicted RBP13.83□□□□□ -0.2
SENP3-206ENST00000581093 CCDC180Q9P1Z9 1646 aa13.74□□□□□ -0.21
SENP3-206ENST00000581093 DNAJC5Q9H3Z4 198 aa13.48□□□□□ -0.25
SENP3-206ENST00000581093 RNF216Q9NWF9 866 aaPredicted RBP13.47□□□□□ -0.25
SENP3-206ENST00000581093 RB1CC1Q8TDY2 1594 aa13.41□□□□□ -0.26
SENP3-206ENST00000581093 PPP4R3CPQ6ZMV5 832 aa13.38□□□□□ -0.27
SENP3-206ENST00000581093 CNKSR2Q8WXI2 1034 aa13.34□□□□□ -0.27
SENP3-206ENST00000581093 PABPN1Q86U42 306 aaKnown RBP eCLIP13.32□□□□□ -0.28
SENP3-206ENST00000581093 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.21□□□□□ -0.29
SENP3-206ENST00000581093 NACADO15069 1562 aa13.16□□□□□ -0.3
SENP3-206ENST00000581093 UNC13AQ9UPW8 1703 aa13.1□□□□□ -0.31
SENP3-206ENST00000581093 DSG3P32926 999 aa13.1□□□□□ -0.31
SENP3-206ENST00000581093 SLC24A1O60721 1099 aa13.07□□□□□ -0.32
SENP3-206ENST00000581093 CECR2Q9BXF3 1484 aa13.05□□□□□ -0.32
SENP3-206ENST00000581093 BICRAQ9NZM4 1560 aa13.05□□□□□ -0.32
SENP3-206ENST00000581093 DCAF8L2P0C7V8 631 aa12.98□□□□□ -0.33
SENP3-206ENST00000581093 CAPN15O75808 1086 aa12.97□□□□□ -0.33
SENP3-206ENST00000581093 CC2D2AQ9P2K1 1620 aa12.97□□□□□ -0.33
SENP3-206ENST00000581093 SPINK5Q9NQ38 1064 aaPredicted RBP12.94□□□□□ -0.34
SENP3-206ENST00000581093 U3KPZ7 1027 aaPredicted RBP12.82□□□□□ -0.36
SENP3-206ENST00000581093 SHROOM4Q9ULL8 1493 aa12.81□□□□□ -0.36
SENP3-206ENST00000581093 EIF4G1Q04637 1599 aaKnown RBP12.78□□□□□ -0.36
SENP3-206ENST00000581093 MYO15BQ96JP2 1530 aa12.77□□□□□ -0.37
SENP3-206ENST00000581093 SP7Q8TDD2 431 aaPredicted RBP12.71□□□□□ -0.37
SENP3-206ENST00000581093 CUX2O14529 1486 aa12.69□□□□□ -0.38
SENP3-206ENST00000581093 CHRDL2Q6WN34 429 aa12.65□□□□□ -0.38
SENP3-206ENST00000581093 ABCB7O75027 752 aa12.59□□□□□ -0.39
SENP3-206ENST00000581093 TRIM41Q8WV44 630 aa12.58□□□□□ -0.4
SENP3-206ENST00000581093 NCBP3Q53F19 620 aaKnown RBP12.56□□□□□ -0.4
SENP3-206ENST00000581093 MYT1Q01538 1121 aa12.54□□□□□ -0.4
SENP3-206ENST00000581093 TRHP20396 242 aaPredicted RBP12.53□□□□□ -0.4
SENP3-206ENST00000581093 RBM42Q9BTD8 480 aaKnown RBP12.52□□□□□ -0.41
SENP3-206ENST00000581093 ERCC6Q03468 1493 aa12.48□□□□□ -0.41
SENP3-206ENST00000581093 SCRIBQ14160 1630 aa12.48□□□□□ -0.41
SENP3-206ENST00000581093 TTBK1Q5TCY1 1321 aaPredicted RBP12.45□□□□□ -0.42
SENP3-206ENST00000581093 ZNF219Q9P2Y4 722 aaPredicted RBP12.45□□□□□ -0.42
SENP3-206ENST00000581093 NPM3O75607 178 aaKnown RBP12.4□□□□□ -0.42
SENP3-206ENST00000581093 DCAF1Q9Y4B6 1507 aa12.36□□□□□ -0.43
SENP3-206ENST00000581093 APLP2Q06481 763 aa12.34□□□□□ -0.43
SENP3-206ENST00000581093 PELP1Q8IZL8 1130 aaKnown RBP12.3□□□□□ -0.44
SENP3-206ENST00000581093 ZCCHC6Q5VYS8 1495 aaKnown RBP12.28□□□□□ -0.44
SENP3-206ENST00000581093 HAX1O00165 279 aa12.18□□□□□ -0.46
SENP3-206ENST00000581093 DAXXQ9UER7 740 aaPredicted RBP12.18□□□□□ -0.46
SENP3-206ENST00000581093 NESP48681 1621 aa12.18□□□□□ -0.46
SENP3-206ENST00000581093 NCAPD3P42695 1498 aa12.17□□□□□ -0.46
SENP3-206ENST00000581093 THOC2Q8NI27 1593 aaKnown RBP12.17□□□□□ -0.46
SENP3-206ENST00000581093 PIP4P2Q8N4L2 257 aa12.13□□□□□ -0.47
SENP3-206ENST00000581093 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.09□□□□□ -0.47
SENP3-206ENST00000581093 SLC4A2P04920 1241 aa12.09□□□□□ -0.47
SENP3-206ENST00000581093 HNRNPUL2Q1KMD3 747 aaKnown RBP12.09□□□□□ -0.47
SENP3-206ENST00000581093 SMARCA2P51531 1590 aa12.05□□□□□ -0.48
SENP3-206ENST00000581093 ATAD2BQ9ULI0 1458 aa12.03□□□□□ -0.48
SENP3-206ENST00000581093 OSCARQ8IYS5 282 aa12.03□□□□□ -0.48
SENP3-206ENST00000581093 AKT1S1Q96B36 256 aa12.01□□□□□ -0.49
SENP3-206ENST00000581093 PLSCR2Q9NRY7 297 aa12.01□□□□□ -0.49
SENP3-206ENST00000581093 HMGXB3Q12766 1538 aa12.01□□□□□ -0.49
SENP3-206ENST00000581093 BAZ1AQ9NRL2 1556 aaPredicted RBP11.99□□□□□ -0.49
SENP3-206ENST00000581093 LAMC3Q9Y6N6 1575 aa11.99□□□□□ -0.49
SENP3-206ENST00000581093 KIF21AQ7Z4S6 1674 aa11.99□□□□□ -0.49
SENP3-206ENST00000581093 SAMD1Q6SPF0 538 aaPredicted RBP11.98□□□□□ -0.49
SENP3-206ENST00000581093 PDS5BQ9NTI5 1447 aa11.96□□□□□ -0.49
SENP3-206ENST00000581093 EVX2Q03828 476 aa11.95□□□□□ -0.5
SENP3-206ENST00000581093 POLA2Q14181 598 aa11.95□□□□□ -0.5
SENP3-206ENST00000581093 REM2Q8IYK8 340 aaPredicted RBP11.92□□□□□ -0.5
SENP3-206ENST00000581093 RIMBP3CA6NJZ7 1639 aa11.9□□□□□ -0.5
SENP3-206ENST00000581093 RIMBP3BA6NNM3 1639 aa11.9□□□□□ -0.5
SENP3-206ENST00000581093 RIMBP3Q9UFD9 1639 aa11.9□□□□□ -0.5
SENP3-206ENST00000581093 LHX8Q68G74 356 aa11.9□□□□□ -0.5
SENP3-206ENST00000581093 ERICH6Q7L0X2 663 aa11.9□□□□□ -0.5
SENP3-206ENST00000581093 FXR2P51116 673 aaKnown RBP eCLIP11.88□□□□□ -0.51
SENP3-206ENST00000581093 MRC2Q9UBG0 1479 aa11.88□□□□□ -0.51
SENP3-206ENST00000581093 BAZ1BQ9UIG0 1483 aaKnown RBP11.88□□□□□ -0.51
SENP3-206ENST00000581093 WDR62O43379 1518 aa11.87□□□□□ -0.51
SENP3-206ENST00000581093 SMARCA4P51532 1647 aa11.84□□□□□ -0.51
SENP3-206ENST00000581093 PITPNM1O00562 1244 aa11.82□□□□□ -0.52
SENP3-206ENST00000581093 ARHGEF11O15085 1522 aa11.81□□□□□ -0.52
SENP3-206ENST00000581093 CYB5RLQ6IPT4 315 aa11.79□□□□□ -0.52
SENP3-206ENST00000581093 CADPSQ9ULU8 1353 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms