RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 NISCHQ9Y2I1 1504 aa25.06■■□□□ 1.6
RFFL-208ENST00000581039 ABCC9O60706 1549 aa22.87■■□□□ 1.25
RFFL-208ENST00000581039 CCDC180Q9P1Z9 1646 aa22.52■■□□□ 1.2
RFFL-208ENST00000581039 DNAJC5BQ9UF47 199 aa21.71■■□□□ 1.07
RFFL-208ENST00000581039 RB1CC1Q8TDY2 1594 aa21.62■■□□□ 1.05
RFFL-208ENST00000581039 DCAF8L2P0C7V8 631 aa21.43■■□□□ 1.02
RFFL-208ENST00000581039 NACADO15069 1562 aa21.42■■□□□ 1.02
RFFL-208ENST00000581039 PABPN1Q86U42 306 aaKnown RBP eCLIP21.32■■□□□ 1
RFFL-208ENST00000581039 MYO15BQ96JP2 1530 aa21.03■□□□□ 0.96
RFFL-208ENST00000581039 UNC13AQ9UPW8 1703 aa21.02■□□□□ 0.96
RFFL-208ENST00000581039 BICRAQ9NZM4 1560 aa20.96■□□□□ 0.95
RFFL-208ENST00000581039 ZCCHC6Q5VYS8 1495 aaKnown RBP20.69■□□□□ 0.9
RFFL-208ENST00000581039 SHROOM4Q9ULL8 1493 aa20.68■□□□□ 0.9
RFFL-208ENST00000581039 DCAF1Q9Y4B6 1507 aa20.66■□□□□ 0.9
RFFL-208ENST00000581039 CECR2Q9BXF3 1484 aa20.63■□□□□ 0.89
RFFL-208ENST00000581039 CC2D2AQ9P2K1 1620 aa20.6■□□□□ 0.89
RFFL-208ENST00000581039 SCRIBQ14160 1630 aa20.54■□□□□ 0.88
RFFL-208ENST00000581039 EIF4G1Q04637 1599 aaKnown RBP20.49■□□□□ 0.87
RFFL-208ENST00000581039 DNAJC5Q9H3Z4 198 aa20.15■□□□□ 0.82
RFFL-208ENST00000581039 NCAPD3P42695 1498 aa19.8■□□□□ 0.76
RFFL-208ENST00000581039 CUX2O14529 1486 aa19.79■□□□□ 0.76
RFFL-208ENST00000581039 ERCC6Q03468 1493 aa19.78■□□□□ 0.76
RFFL-208ENST00000581039 ATAD2BQ9ULI0 1458 aa19.7■□□□□ 0.74
RFFL-208ENST00000581039 SMARCA2P51531 1590 aa19.61■□□□□ 0.73
RFFL-208ENST00000581039 HMGXB3Q12766 1538 aa19.57■□□□□ 0.72
RFFL-208ENST00000581039 SMARCA4P51532 1647 aa19.56■□□□□ 0.72
RFFL-208ENST00000581039 NESP48681 1621 aa19.55■□□□□ 0.72
RFFL-208ENST00000581039 BAZ1BQ9UIG0 1483 aaKnown RBP19.5■□□□□ 0.71
RFFL-208ENST00000581039 BAZ1AQ9NRL2 1556 aaPredicted RBP19.47■□□□□ 0.71
RFFL-208ENST00000581039 PEG3Q9GZU2 1588 aa19.37■□□□□ 0.69
RFFL-208ENST00000581039 LAMC3Q9Y6N6 1575 aa19.35■□□□□ 0.69
RFFL-208ENST00000581039 THOC2Q8NI27 1593 aaKnown RBP19.33■□□□□ 0.69
RFFL-208ENST00000581039 PDS5BQ9NTI5 1447 aa19.33■□□□□ 0.68
RFFL-208ENST00000581039 MROH2BQ7Z745 1585 aa19.3■□□□□ 0.68
RFFL-208ENST00000581039 CADPSQ9ULU8 1353 aa19.22■□□□□ 0.67
RFFL-208ENST00000581039 KIF21AQ7Z4S6 1674 aa19.21■□□□□ 0.67
RFFL-208ENST00000581039 TRIM41Q8WV44 630 aa19.18■□□□□ 0.66
RFFL-208ENST00000581039 MRC2Q9UBG0 1479 aa19.13■□□□□ 0.65
RFFL-208ENST00000581039 WDR62O43379 1518 aa19.05■□□□□ 0.64
RFFL-208ENST00000581039 WIZO95785 1651 aa19.03■□□□□ 0.64
RFFL-208ENST00000581039 CEP164Q9UPV0 1460 aa19■□□□□ 0.63
RFFL-208ENST00000581039 FANCD2Q9BXW9 1451 aa18.97■□□□□ 0.63
RFFL-208ENST00000581039 OSCARQ8IYS5 282 aa18.95■□□□□ 0.62
RFFL-208ENST00000581039 CFTRP13569 1480 aa18.91■□□□□ 0.62
RFFL-208ENST00000581039 RSF1Q96T23 1441 aaPredicted RBP18.84■□□□□ 0.61
RFFL-208ENST00000581039 URB2Q14146 1524 aaKnown RBP18.8■□□□□ 0.6
RFFL-208ENST00000581039 TOP2AP11388 1531 aaKnown RBP18.79■□□□□ 0.6
RFFL-208ENST00000581039 IFT140Q96RY7 1462 aa18.65■□□□□ 0.58
RFFL-208ENST00000581039 ZNF608Q9ULD9 1512 aaPredicted RBP18.63■□□□□ 0.57
RFFL-208ENST00000581039 CCDC88BA6NC98 1476 aa18.62■□□□□ 0.57
RFFL-208ENST00000581039 RIMBP3CA6NJZ7 1639 aa18.59■□□□□ 0.57
RFFL-208ENST00000581039 RIMBP3BA6NNM3 1639 aa18.59■□□□□ 0.57
RFFL-208ENST00000581039 RIMBP3Q9UFD9 1639 aa18.59■□□□□ 0.57
RFFL-208ENST00000581039 TOPBP1Q92547 1522 aa18.57■□□□□ 0.56
RFFL-208ENST00000581039 PRDM2Q13029 1718 aa18.57■□□□□ 0.56
RFFL-208ENST00000581039 ABCC8Q09428 1581 aa18.55■□□□□ 0.56
RFFL-208ENST00000581039 ARHGEF11O15085 1522 aa18.54■□□□□ 0.56
RFFL-208ENST00000581039 CYB5RLQ6IPT4 315 aa18.53■□□□□ 0.56
RFFL-208ENST00000581039 FBLN2P98095 1184 aa18.47■□□□□ 0.55
RFFL-208ENST00000581039 AQRO60306 1485 aaKnown RBP eCLIP18.46■□□□□ 0.555e-10■■■■■ 39.2
RFFL-208ENST00000581039 EIF4G3O43432 1585 aaKnown RBP18.46■□□□□ 0.55
RFFL-208ENST00000581039 DNMBPQ6XZF7 1577 aa18.45■□□□□ 0.54
RFFL-208ENST00000581039 TRHP20396 242 aaPredicted RBP18.42■□□□□ 0.54
RFFL-208ENST00000581039 TARBP1Q13395 1621 aaKnown RBP18.38■□□□□ 0.53
RFFL-208ENST00000581039 POLA1P09884 1462 aaPredicted RBP18.36■□□□□ 0.53
RFFL-208ENST00000581039 CHD1O14646 1710 aa18.35■□□□□ 0.53
RFFL-208ENST00000581039 SOGA1O94964 1423 aa18.33■□□□□ 0.53
RFFL-208ENST00000581039 TDRD9Q8NDG6 1382 aaKnown RBP18.33■□□□□ 0.53
RFFL-208ENST00000581039 ARAP1Q96P48 1450 aa18.33■□□□□ 0.52
RFFL-208ENST00000581039 RAD54L2Q9Y4B4 1467 aa18.33■□□□□ 0.52
RFFL-208ENST00000581039 CHMP7Q8WUX9 453 aaPredicted RBP18.29■□□□□ 0.52
RFFL-208ENST00000581039 SNAPC4Q5SXM2 1469 aa18.23■□□□□ 0.51
RFFL-208ENST00000581039 FGD5Q6ZNL6 1462 aa18.21■□□□□ 0.51
RFFL-208ENST00000581039 WDR97A6NE52 1622 aa18.17■□□□□ 0.5
RFFL-208ENST00000581039 GRIN2BQ13224 1484 aa18.17■□□□□ 0.5
RFFL-208ENST00000581039 MAGI1Q96QZ7 1491 aaPredicted RBP18.17■□□□□ 0.5
RFFL-208ENST00000581039 CLASP1Q7Z460 1538 aa18.16■□□□□ 0.5
RFFL-208ENST00000581039 SYNJ1O43426 1573 aa18.16■□□□□ 0.5
RFFL-208ENST00000581039 CUX1P39880 1505 aa18.14■□□□□ 0.49
RFFL-208ENST00000581039 SYNJ2O15056 1496 aa18.13■□□□□ 0.49
RFFL-208ENST00000581039 AEBP2Q6ZN18 517 aaPredicted RBP18.08■□□□□ 0.48
RFFL-208ENST00000581039 GAPVD1Q14C86 1478 aa18.07■□□□□ 0.48
RFFL-208ENST00000581039 ABCA10Q8WWZ4 1543 aa17.99■□□□□ 0.47
RFFL-208ENST00000581039 PBRM1Q86U86 1689 aa17.98■□□□□ 0.47
RFFL-208ENST00000581039 ABCA5Q8WWZ7 1642 aa17.94■□□□□ 0.46
RFFL-208ENST00000581039 SUPT5HO00267 1087 aaKnown RBP17.93■□□□□ 0.46
RFFL-208ENST00000581039 WRNQ14191 1432 aaPredicted RBP eCLIP17.92■□□□□ 0.46
RFFL-208ENST00000581039 GRIN2AQ12879 1464 aa17.92■□□□□ 0.46
RFFL-208ENST00000581039 ERCC6L2Q5T890 1561 aa17.87■□□□□ 0.45
RFFL-208ENST00000581039 NUP160Q12769 1436 aa17.86■□□□□ 0.45
RFFL-208ENST00000581039 FHAD1B1AJZ9 1412 aa17.84■□□□□ 0.45
RFFL-208ENST00000581039 CEP170Q5SW79 1584 aa17.83■□□□□ 0.45
RFFL-208ENST00000581039 ADAMTS12P58397 1594 aa17.83■□□□□ 0.44
RFFL-208ENST00000581039 TOP2BQ02880 1626 aa17.77■□□□□ 0.44
RFFL-208ENST00000581039 JPH4Q96JJ6 628 aa17.77■□□□□ 0.44
RFFL-208ENST00000581039 PRG4Q92954 1404 aaPredicted RBP17.76■□□□□ 0.43
RFFL-208ENST00000581039 ERICH3Q5RHP9 1530 aa17.76■□□□□ 0.43
RFFL-208ENST00000581039 SHROOM2Q13796 1616 aa17.76■□□□□ 0.43
RFFL-208ENST00000581039 BIVM-ERCC5R4GMW8 1640 aa17.74■□□□□ 0.43
RFFL-208ENST00000581039 NPM1P06748 294 aaKnown RBP eCLIP17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 859.1 ms