RNA–Protein interactions for RNA: ENST00000580012.1

NDEL1-207, Transcript of nudE neurodevelopment protein 1 like 1, humanhuman

TSL 3

Gene NDEL1, Length 790 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDEL1-207ENST00000580012 NISCHQ9Y2I1 1504 aa54.49■■■■■ 6.31
NDEL1-207ENST00000580012 CCDC180Q9P1Z9 1646 aa48.07■■■■■ 5.29
NDEL1-207ENST00000580012 ABCC9O60706 1549 aa46.75■■■■■ 5.07
NDEL1-207ENST00000580012 ZCCHC6Q5VYS8 1495 aaKnown RBP45.45■■■■■ 4.87
NDEL1-207ENST00000580012 DCAF8L2P0C7V8 631 aa45.35■■■■■ 4.85
NDEL1-207ENST00000580012 NACADO15069 1562 aa45.23■■■■■ 4.83
NDEL1-207ENST00000580012 MYO15BQ96JP2 1530 aa45.19■■■■■ 4.82
NDEL1-207ENST00000580012 DCAF1Q9Y4B6 1507 aa45.13■■■■■ 4.82
NDEL1-207ENST00000580012 RB1CC1Q8TDY2 1594 aa45.11■■■■■ 4.81
NDEL1-207ENST00000580012 UNC13AQ9UPW8 1703 aa43.91■■■■■ 4.62
NDEL1-207ENST00000580012 SCRIBQ14160 1630 aa43.9■■■■■ 4.62
NDEL1-207ENST00000580012 PABPN1Q86U42 306 aaKnown RBP eCLIP43.86■■■■■ 4.61
NDEL1-207ENST00000580012 BICRAQ9NZM4 1560 aa43.8■■■■■ 4.6
NDEL1-207ENST00000580012 DNAJC5BQ9UF47 199 aa43.62■■■■■ 4.57
NDEL1-207ENST00000580012 SHROOM4Q9ULL8 1493 aa43.39■■■■■ 4.54
NDEL1-207ENST00000580012 EIF4G1Q04637 1599 aaKnown RBP42.56■■■■■ 4.4
NDEL1-207ENST00000580012 CECR2Q9BXF3 1484 aa42.43■■■■■ 4.38
NDEL1-207ENST00000580012 CC2D2AQ9P2K1 1620 aa42.26■■■■■ 4.36
NDEL1-207ENST00000580012 BAZ1AQ9NRL2 1556 aaPredicted RBP42.14■■■■■ 4.34
NDEL1-207ENST00000580012 SMARCA4P51532 1647 aa42.08■■■■■ 4.33
NDEL1-207ENST00000580012 MROH2BQ7Z745 1585 aa41.99■■■■■ 4.31
NDEL1-207ENST00000580012 ATAD2BQ9ULI0 1458 aa41.88■■■■■ 4.29
NDEL1-207ENST00000580012 NCAPD3P42695 1498 aa41.85■■■■■ 4.29
NDEL1-207ENST00000580012 SMARCA2P51531 1590 aa41.76■■■■■ 4.28
NDEL1-207ENST00000580012 PEG3Q9GZU2 1588 aa41.75■■■■■ 4.27
NDEL1-207ENST00000580012 RSF1Q96T23 1441 aaPredicted RBP41.74■■■■■ 4.27
NDEL1-207ENST00000580012 HMGXB3Q12766 1538 aa41.54■■■■■ 4.24
NDEL1-207ENST00000580012 BAZ1BQ9UIG0 1483 aaKnown RBP41.47■■■■■ 4.23
NDEL1-207ENST00000580012 WIZO95785 1651 aa41.44■■■■■ 4.22
NDEL1-207ENST00000580012 TOP2AP11388 1531 aaKnown RBP41.08■■■■■ 4.17
NDEL1-207ENST00000580012 SUPT5HO00267 1087 aaKnown RBP40.95■■■■■ 4.15
NDEL1-207ENST00000580012 CCDC88BA6NC98 1476 aa40.69■■■■■ 4.1
NDEL1-207ENST00000580012 CADPSQ9ULU8 1353 aa40.64■■■■■ 4.1
NDEL1-207ENST00000580012 NESP48681 1621 aa40.6■■■■■ 4.09
NDEL1-207ENST00000580012 LAMC3Q9Y6N6 1575 aa40.51■■■■■ 4.08
NDEL1-207ENST00000580012 CFTRP13569 1480 aa40.46■■■■■ 4.07
NDEL1-207ENST00000580012 PDS5BQ9NTI5 1447 aa40.33■■■■■ 4.05
NDEL1-207ENST00000580012 ERCC6Q03468 1493 aa40.21■■■■■ 4.03
NDEL1-207ENST00000580012 CUX2O14529 1486 aa40.08■■■■■ 4.01
NDEL1-207ENST00000580012 FANCD2Q9BXW9 1451 aa40.08■■■■■ 4.01
NDEL1-207ENST00000580012 DNAJC5Q9H3Z4 198 aa40.05■■■■■ 4
NDEL1-207ENST00000580012 CEP164Q9UPV0 1460 aa39.94■■■■□ 3.98
NDEL1-207ENST00000580012 KIF21AQ7Z4S6 1674 aa39.94■■■■□ 3.98
NDEL1-207ENST00000580012 PRDM2Q13029 1718 aa39.84■■■■□ 3.97
NDEL1-207ENST00000580012 MRC2Q9UBG0 1479 aa39.83■■■■□ 3.97
NDEL1-207ENST00000580012 THOC2Q8NI27 1593 aaKnown RBP39.8■■■■□ 3.96
NDEL1-207ENST00000580012 WDR62O43379 1518 aa39.67■■■■□ 3.94
NDEL1-207ENST00000580012 URB2Q14146 1524 aaKnown RBP39.66■■■■□ 3.94
NDEL1-207ENST00000580012 ABCC8Q09428 1581 aa39.54■■■■□ 3.92
NDEL1-207ENST00000580012 TOPBP1Q92547 1522 aa39.49■■■■□ 3.91
NDEL1-207ENST00000580012 DNMBPQ6XZF7 1577 aa39.42■■■■□ 3.9
NDEL1-207ENST00000580012 CUX1P39880 1505 aa39.35■■■■□ 3.89
NDEL1-207ENST00000580012 WRNQ14191 1432 aaPredicted RBP eCLIP39.28■■■■□ 3.88
NDEL1-207ENST00000580012 POLA1P09884 1462 aaPredicted RBP39.18■■■■□ 3.86
NDEL1-207ENST00000580012 IFT140Q96RY7 1462 aa39.15■■■■□ 3.86
NDEL1-207ENST00000580012 FGD5Q6ZNL6 1462 aa39.13■■■■□ 3.85
NDEL1-207ENST00000580012 SOGA1O94964 1423 aa39.08■■■■□ 3.85
NDEL1-207ENST00000580012 TOP2BQ02880 1626 aa39.07■■■■□ 3.85
NDEL1-207ENST00000580012 SYNJ1O43426 1573 aa39.07■■■■□ 3.84
NDEL1-207ENST00000580012 RAD54L2Q9Y4B4 1467 aa39.03■■■■□ 3.84
NDEL1-207ENST00000580012 BIVM-ERCC5R4GMW8 1640 aa39.01■■■■□ 3.84
NDEL1-207ENST00000580012 TARBP1Q13395 1621 aaKnown RBP38.98■■■■□ 3.83
NDEL1-207ENST00000580012 ZNF608Q9ULD9 1512 aaPredicted RBP38.94■■■■□ 3.82
NDEL1-207ENST00000580012 ABCA10Q8WWZ4 1543 aa38.82■■■■□ 3.8
NDEL1-207ENST00000580012 TDRD9Q8NDG6 1382 aaKnown RBP38.82■■■■□ 3.8
NDEL1-207ENST00000580012 AQRO60306 1485 aaKnown RBP eCLIP38.8■■■■□ 3.8
NDEL1-207ENST00000580012 TRIM41Q8WV44 630 aa38.69■■■■□ 3.78
NDEL1-207ENST00000580012 WDR97A6NE52 1622 aa38.67■■■■□ 3.78
NDEL1-207ENST00000580012 EIF4G3O43432 1585 aaKnown RBP38.65■■■■□ 3.78
NDEL1-207ENST00000580012 GAPVD1Q14C86 1478 aa38.6■■■■□ 3.77
NDEL1-207ENST00000580012 CHIC1Q5VXU3 224 aa38.57■■■■□ 3.76
NDEL1-207ENST00000580012 GRIN2BQ13224 1484 aa38.54■■■■□ 3.76
NDEL1-207ENST00000580012 ABCA5Q8WWZ7 1642 aa38.52■■■■□ 3.76
NDEL1-207ENST00000580012 KIF27Q86VH2 1401 aa38.44■■■■□ 3.74
NDEL1-207ENST00000580012 SNAPC4Q5SXM2 1469 aa38.38■■■■□ 3.73
NDEL1-207ENST00000580012 MAGI1Q96QZ7 1491 aaPredicted RBP38.37■■■■□ 3.73
NDEL1-207ENST00000580012 IGF1RP08069 1367 aa38.33■■■■□ 3.73
NDEL1-207ENST00000580012 ERICH3Q5RHP9 1530 aa38.33■■■■□ 3.73
NDEL1-207ENST00000580012 OSCARQ8IYS5 282 aa38.26■■■■□ 3.72
NDEL1-207ENST00000580012 PBRM1Q86U86 1689 aa38.26■■■■□ 3.71
NDEL1-207ENST00000580012 CHMP7Q8WUX9 453 aaPredicted RBP38.23■■■■□ 3.71
NDEL1-207ENST00000580012 RUSC2Q8N2Y8 1516 aa38.22■■■■□ 3.71
NDEL1-207ENST00000580012 SYNJ2O15056 1496 aa38.22■■■■□ 3.71
NDEL1-207ENST00000580012 FBLN2P98095 1184 aa38.21■■■■□ 3.71
NDEL1-207ENST00000580012 FHAD1B1AJZ9 1412 aa38.2■■■■□ 3.71
NDEL1-207ENST00000580012 ADAMTS12P58397 1594 aa38.11■■■■□ 3.69
NDEL1-207ENST00000580012 CARMIL1Q5VZK9 1371 aa38.06■■■■□ 3.68
NDEL1-207ENST00000580012 GRIN2AQ12879 1464 aa38.02■■■■□ 3.68
NDEL1-207ENST00000580012 CHD1O14646 1710 aa38.01■■■■□ 3.67
NDEL1-207ENST00000580012 EEA1Q15075 1411 aa37.99■■■■□ 3.67
NDEL1-207ENST00000580012 CSRNP3Q8WYN3 585 aa37.97■■■■□ 3.67
NDEL1-207ENST00000580012 CUL7Q14999 1698 aa37.94■■■■□ 3.66
NDEL1-207ENST00000580012 NUP160Q12769 1436 aa37.9■■■■□ 3.66
NDEL1-207ENST00000580012 PRXQ9BXM0 1461 aa37.85■■■■□ 3.65
NDEL1-207ENST00000580012 FAM9AQ8IZU1 332 aaPredicted RBP37.82■■■■□ 3.64
NDEL1-207ENST00000580012 RAPGEF2Q9Y4G8 1499 aa37.82■■■■□ 3.64
NDEL1-207ENST00000580012 CLASP1Q7Z460 1538 aa37.78■■■■□ 3.64
NDEL1-207ENST00000580012 CEP170Q5SW79 1584 aa37.76■■■■□ 3.64
NDEL1-207ENST00000580012 RIMBP3CA6NJZ7 1639 aa37.76■■■■□ 3.63
NDEL1-207ENST00000580012 RIMBP3BA6NNM3 1639 aa37.76■■■■□ 3.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms