RNA–Protein interactions for RNA: ENST00000575176.5

SMG6-216, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 557 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-216ENST00000575176 NISCHQ9Y2I1 1504 aa21.81■■□□□ 1.08
SMG6-216ENST00000575176 CCDC180Q9P1Z9 1646 aa19.54■□□□□ 0.72
SMG6-216ENST00000575176 ABCC9O60706 1549 aa18.94■□□□□ 0.62
SMG6-216ENST00000575176 RB1CC1Q8TDY2 1594 aa18.26■□□□□ 0.51
SMG6-216ENST00000575176 NACADO15069 1562 aa18.24■□□□□ 0.51
SMG6-216ENST00000575176 ZCCHC6Q5VYS8 1495 aaKnown RBP18.23■□□□□ 0.51
SMG6-216ENST00000575176 MYO15BQ96JP2 1530 aa18.19■□□□□ 0.5
SMG6-216ENST00000575176 UNC13AQ9UPW8 1703 aa18.11■□□□□ 0.49
SMG6-216ENST00000575176 DCAF1Q9Y4B6 1507 aa18.1■□□□□ 0.49
SMG6-216ENST00000575176 BICRAQ9NZM4 1560 aa17.88■□□□□ 0.45
SMG6-216ENST00000575176 DCAF8L2P0C7V8 631 aa17.77■□□□□ 0.44
SMG6-216ENST00000575176 SCRIBQ14160 1630 aa17.72■□□□□ 0.43
SMG6-216ENST00000575176 SHROOM4Q9ULL8 1493 aa17.59■□□□□ 0.41
SMG6-216ENST00000575176 PABPN1Q86U42 306 aaKnown RBP eCLIP17.55■□□□□ 0.4
SMG6-216ENST00000575176 DNAJC5BQ9UF47 199 aa17.42■□□□□ 0.38
SMG6-216ENST00000575176 EIF4G1Q04637 1599 aaKnown RBP17.31■□□□□ 0.36
SMG6-216ENST00000575176 CC2D2AQ9P2K1 1620 aa17.25■□□□□ 0.35
SMG6-216ENST00000575176 CECR2Q9BXF3 1484 aa17.02■□□□□ 0.32
SMG6-216ENST00000575176 SMARCA4P51532 1647 aa16.99■□□□□ 0.31
SMG6-216ENST00000575176 PEG3Q9GZU2 1588 aa16.88■□□□□ 0.29
SMG6-216ENST00000575176 BAZ1AQ9NRL2 1556 aaPredicted RBP16.88■□□□□ 0.29
SMG6-216ENST00000575176 MROH2BQ7Z745 1585 aa16.83■□□□□ 0.28
SMG6-216ENST00000575176 ATAD2BQ9ULI0 1458 aa16.83■□□□□ 0.28
SMG6-216ENST00000575176 HMGXB3Q12766 1538 aa16.81■□□□□ 0.28
SMG6-216ENST00000575176 NCAPD3P42695 1498 aa16.8■□□□□ 0.28
SMG6-216ENST00000575176 SMARCA2P51531 1590 aa16.79■□□□□ 0.28
SMG6-216ENST00000575176 WIZO95785 1651 aa16.68■□□□□ 0.26
SMG6-216ENST00000575176 BAZ1BQ9UIG0 1483 aaKnown RBP16.63■□□□□ 0.25
SMG6-216ENST00000575176 RSF1Q96T23 1441 aaPredicted RBP16.55■□□□□ 0.24
SMG6-216ENST00000575176 TOP2AP11388 1531 aaKnown RBP16.47■□□□□ 0.23
SMG6-216ENST00000575176 NESP48681 1621 aa16.45■□□□□ 0.22
SMG6-216ENST00000575176 LAMC3Q9Y6N6 1575 aa16.42■□□□□ 0.22
SMG6-216ENST00000575176 KIF21AQ7Z4S6 1674 aa16.38■□□□□ 0.21
SMG6-216ENST00000575176 THOC2Q8NI27 1593 aaKnown RBP16.36■□□□□ 0.21
SMG6-216ENST00000575176 PRDM2Q13029 1718 aa16.31■□□□□ 0.2
SMG6-216ENST00000575176 CADPSQ9ULU8 1353 aa16.24■□□□□ 0.19
SMG6-216ENST00000575176 CFTRP13569 1480 aa16.22■□□□□ 0.19
SMG6-216ENST00000575176 ERCC6Q03468 1493 aa16.22■□□□□ 0.19
SMG6-216ENST00000575176 CCDC88BA6NC98 1476 aa16.2■□□□□ 0.18
SMG6-216ENST00000575176 CUX2O14529 1486 aa16.2■□□□□ 0.18
SMG6-216ENST00000575176 WDR62O43379 1518 aa16.14■□□□□ 0.18
SMG6-216ENST00000575176 PDS5BQ9NTI5 1447 aa16.14■□□□□ 0.17
SMG6-216ENST00000575176 FANCD2Q9BXW9 1451 aa16.1■□□□□ 0.17
SMG6-216ENST00000575176 MRC2Q9UBG0 1479 aa16.09■□□□□ 0.17
SMG6-216ENST00000575176 CEP164Q9UPV0 1460 aa16.08■□□□□ 0.16
SMG6-216ENST00000575176 URB2Q14146 1524 aaKnown RBP16.03■□□□□ 0.16
SMG6-216ENST00000575176 DNMBPQ6XZF7 1577 aa15.9■□□□□ 0.14
SMG6-216ENST00000575176 TOPBP1Q92547 1522 aa15.89■□□□□ 0.13
SMG6-216ENST00000575176 TARBP1Q13395 1621 aaKnown RBP15.83■□□□□ 0.13
SMG6-216ENST00000575176 CUX1P39880 1505 aa15.8■□□□□ 0.12
SMG6-216ENST00000575176 SUPT5HO00267 1087 aaKnown RBP15.8■□□□□ 0.12
SMG6-216ENST00000575176 WDR97A6NE52 1622 aa15.79■□□□□ 0.12
SMG6-216ENST00000575176 ABCC8Q09428 1581 aa15.77■□□□□ 0.11
SMG6-216ENST00000575176 EIF4G3O43432 1585 aaKnown RBP15.76■□□□□ 0.11
SMG6-216ENST00000575176 POLA1P09884 1462 aaPredicted RBP15.76■□□□□ 0.11
SMG6-216ENST00000575176 ZNF608Q9ULD9 1512 aaPredicted RBP15.74■□□□□ 0.11
SMG6-216ENST00000575176 IFT140Q96RY7 1462 aa15.73■□□□□ 0.11
SMG6-216ENST00000575176 BIVM-ERCC5R4GMW8 1640 aa15.72■□□□□ 0.11
SMG6-216ENST00000575176 FGD5Q6ZNL6 1462 aa15.69■□□□□ 0.1
SMG6-216ENST00000575176 SYNJ1O43426 1573 aa15.69■□□□□ 0.1
SMG6-216ENST00000575176 TOP2BQ02880 1626 aa15.66■□□□□ 0.1
SMG6-216ENST00000575176 RAD54L2Q9Y4B4 1467 aa15.64■□□□□ 0.09
SMG6-216ENST00000575176 ABCA5Q8WWZ7 1642 aa15.62■□□□□ 0.09
SMG6-216ENST00000575176 DNAJC5Q9H3Z4 198 aa15.62■□□□□ 0.09
SMG6-216ENST00000575176 PBRM1Q86U86 1689 aa15.6■□□□□ 0.09
SMG6-216ENST00000575176 CHD1O14646 1710 aa15.6■□□□□ 0.09
SMG6-216ENST00000575176 ABCA10Q8WWZ4 1543 aa15.56■□□□□ 0.08
SMG6-216ENST00000575176 AQRO60306 1485 aaKnown RBP eCLIP15.55■□□□□ 0.08
SMG6-216ENST00000575176 SOGA1O94964 1423 aa15.54■□□□□ 0.08
SMG6-216ENST00000575176 WRNQ14191 1432 aaPredicted RBP eCLIP15.54■□□□□ 0.08
SMG6-216ENST00000575176 SNAPC4Q5SXM2 1469 aa15.46■□□□□ 0.07
SMG6-216ENST00000575176 TDRD9Q8NDG6 1382 aaKnown RBP15.46■□□□□ 0.07
SMG6-216ENST00000575176 MAGI1Q96QZ7 1491 aaPredicted RBP15.44■□□□□ 0.06
SMG6-216ENST00000575176 ADAMTS12P58397 1594 aa15.44■□□□□ 0.06
SMG6-216ENST00000575176 GRIN2BQ13224 1484 aa15.43■□□□□ 0.06
SMG6-216ENST00000575176 GAPVD1Q14C86 1478 aa15.42■□□□□ 0.06
SMG6-216ENST00000575176 CLASP1Q7Z460 1538 aa15.42■□□□□ 0.06
SMG6-216ENST00000575176 SYNJ2O15056 1496 aa15.37■□□□□ 0.05
SMG6-216ENST00000575176 ERICH3Q5RHP9 1530 aa15.37■□□□□ 0.05
SMG6-216ENST00000575176 RIMBP3CA6NJZ7 1639 aa15.36■□□□□ 0.05
SMG6-216ENST00000575176 RIMBP3BA6NNM3 1639 aa15.36■□□□□ 0.05
SMG6-216ENST00000575176 RIMBP3Q9UFD9 1639 aa15.36■□□□□ 0.05
SMG6-216ENST00000575176 ARHGEF11O15085 1522 aa15.31■□□□□ 0.04
SMG6-216ENST00000575176 CEP170Q5SW79 1584 aa15.31■□□□□ 0.04
SMG6-216ENST00000575176 GRIN2AQ12879 1464 aa15.29■□□□□ 0.04
SMG6-216ENST00000575176 OSCARQ8IYS5 282 aa15.28■□□□□ 0.04
SMG6-216ENST00000575176 CUL7Q14999 1698 aa15.26■□□□□ 0.03
SMG6-216ENST00000575176 SHROOM2Q13796 1616 aa15.26■□□□□ 0.03
SMG6-216ENST00000575176 NUP160Q12769 1436 aa15.26■□□□□ 0.03
SMG6-216ENST00000575176 RUSC2Q8N2Y8 1516 aa15.24■□□□□ 0.03
SMG6-216ENST00000575176 FHAD1B1AJZ9 1412 aa15.23■□□□□ 0.03
SMG6-216ENST00000575176 ARAP1Q96P48 1450 aa15.2■□□□□ 0.02
SMG6-216ENST00000575176 ERCC6L2Q5T890 1561 aa15.19■□□□□ 0.02
SMG6-216ENST00000575176 KIF27Q86VH2 1401 aa15.17■□□□□ 0.02
SMG6-216ENST00000575176 IGF1RP08069 1367 aa15.15■□□□□ 0.02
SMG6-216ENST00000575176 FBLN2P98095 1184 aa15.12■□□□□ 0.01
SMG6-216ENST00000575176 CHMP7Q8WUX9 453 aaPredicted RBP15.11■□□□□ 0.01
SMG6-216ENST00000575176 CTTNBP2Q8WZ74 1663 aa15.03■□□□□ -0
SMG6-216ENST00000575176 KIAA0586Q9BVV6 1533 aa15.02□□□□□ -0.01
SMG6-216ENST00000575176 PRXQ9BXM0 1461 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms