RNA–Protein interactions for RNA: ENST00000574218.1

CTNS-208, Transcript of cystinosin, lysosomal cystine transporter, humanhuman

TSL 5

Gene CTNS, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNS-208ENST00000574218 NISCHQ9Y2I1 1504 aa30.29■■■□□ 2.44
CTNS-208ENST00000574218 ABCC9O60706 1549 aa27.72■■■□□ 2.03
CTNS-208ENST00000574218 CCDC180Q9P1Z9 1646 aa27.45■■□□□ 1.99
CTNS-208ENST00000574218 RB1CC1Q8TDY2 1594 aa26.29■■□□□ 1.8
CTNS-208ENST00000574218 DNAJC5BQ9UF47 199 aa26.16■■□□□ 1.78
CTNS-208ENST00000574218 NACADO15069 1562 aa25.99■■□□□ 1.75
CTNS-208ENST00000574218 DCAF8L2P0C7V8 631 aa25.78■■□□□ 1.72
CTNS-208ENST00000574218 UNC13AQ9UPW8 1703 aa25.72■■□□□ 1.71
CTNS-208ENST00000574218 PABPN1Q86U42 306 aaKnown RBP eCLIP25.69■■□□□ 1.7
CTNS-208ENST00000574218 MYO15BQ96JP2 1530 aa25.45■■□□□ 1.66
CTNS-208ENST00000574218 BICRAQ9NZM4 1560 aa25.43■■□□□ 1.66
CTNS-208ENST00000574218 SHROOM4Q9ULL8 1493 aa25.12■■□□□ 1.61
CTNS-208ENST00000574218 CC2D2AQ9P2K1 1620 aa25.04■■□□□ 1.6
CTNS-208ENST00000574218 ZCCHC6Q5VYS8 1495 aaKnown RBP25.02■■□□□ 1.6
CTNS-208ENST00000574218 CECR2Q9BXF3 1484 aa25.01■■□□□ 1.59
CTNS-208ENST00000574218 DCAF1Q9Y4B6 1507 aa25■■□□□ 1.59
CTNS-208ENST00000574218 SCRIBQ14160 1630 aa24.96■■□□□ 1.59
CTNS-208ENST00000574218 EIF4G1Q04637 1599 aaKnown RBP24.89■■□□□ 1.58
CTNS-208ENST00000574218 DNAJC5Q9H3Z4 198 aa24.38■■□□□ 1.49
CTNS-208ENST00000574218 CUX2O14529 1486 aa24.07■■□□□ 1.44
CTNS-208ENST00000574218 ERCC6Q03468 1493 aa24.03■■□□□ 1.44
CTNS-208ENST00000574218 NCAPD3P42695 1498 aa23.92■■□□□ 1.42
CTNS-208ENST00000574218 ATAD2BQ9ULI0 1458 aa23.81■■□□□ 1.4
CTNS-208ENST00000574218 SMARCA2P51531 1590 aa23.8■■□□□ 1.4
CTNS-208ENST00000574218 HMGXB3Q12766 1538 aa23.77■■□□□ 1.4
CTNS-208ENST00000574218 SMARCA4P51532 1647 aa23.76■■□□□ 1.39
CTNS-208ENST00000574218 AEBP2Q6ZN18 517 aaPredicted RBP23.68■■□□□ 1.38
CTNS-208ENST00000574218 NESP48681 1621 aa23.66■■□□□ 1.38
CTNS-208ENST00000574218 BAZ1BQ9UIG0 1483 aaKnown RBP23.62■■□□□ 1.37
CTNS-208ENST00000574218 BAZ1AQ9NRL2 1556 aaPredicted RBP23.59■■□□□ 1.37
CTNS-208ENST00000574218 THOC2Q8NI27 1593 aaKnown RBP23.56■■□□□ 1.36
CTNS-208ENST00000574218 LAMC3Q9Y6N6 1575 aa23.53■■□□□ 1.36
CTNS-208ENST00000574218 PEG3Q9GZU2 1588 aa23.48■■□□□ 1.35
CTNS-208ENST00000574218 KIF21AQ7Z4S6 1674 aa23.48■■□□□ 1.35
CTNS-208ENST00000574218 PDS5BQ9NTI5 1447 aa23.39■■□□□ 1.33
CTNS-208ENST00000574218 MROH2BQ7Z745 1585 aa23.31■■□□□ 1.32
CTNS-208ENST00000574218 TRIM41Q8WV44 630 aa23.26■■□□□ 1.31
CTNS-208ENST00000574218 MRC2Q9UBG0 1479 aa23.2■■□□□ 1.3
CTNS-208ENST00000574218 CADPSQ9ULU8 1353 aa23.18■■□□□ 1.3
CTNS-208ENST00000574218 WDR62O43379 1518 aa23.14■■□□□ 1.3
CTNS-208ENST00000574218 WIZO95785 1651 aa23.08■■□□□ 1.29
CTNS-208ENST00000574218 CEP164Q9UPV0 1460 aa23.06■■□□□ 1.28
CTNS-208ENST00000574218 FANCD2Q9BXW9 1451 aa22.96■■□□□ 1.27
CTNS-208ENST00000574218 OSCARQ8IYS5 282 aa22.88■■□□□ 1.25
CTNS-208ENST00000574218 CFTRP13569 1480 aa22.84■■□□□ 1.25
CTNS-208ENST00000574218 PRDM2Q13029 1718 aa22.79■■□□□ 1.24
CTNS-208ENST00000574218 TOP2AP11388 1531 aaKnown RBP22.77■■□□□ 1.24
CTNS-208ENST00000574218 CHIC1Q5VXU3 224 aa22.76■■□□□ 1.23
CTNS-208ENST00000574218 URB2Q14146 1524 aaKnown RBP22.76■■□□□ 1.23
CTNS-208ENST00000574218 RSF1Q96T23 1441 aaPredicted RBP22.67■■□□□ 1.22
CTNS-208ENST00000574218 RIMBP3CA6NJZ7 1639 aa22.67■■□□□ 1.22
CTNS-208ENST00000574218 RIMBP3BA6NNM3 1639 aa22.67■■□□□ 1.22
CTNS-208ENST00000574218 RIMBP3Q9UFD9 1639 aa22.67■■□□□ 1.22
CTNS-208ENST00000574218 IFT140Q96RY7 1462 aa22.59■■□□□ 1.21
CTNS-208ENST00000574218 ZNF608Q9ULD9 1512 aaPredicted RBP22.53■■□□□ 1.2
CTNS-208ENST00000574218 ARHGEF11O15085 1522 aa22.52■■□□□ 1.2
CTNS-208ENST00000574218 TOPBP1Q92547 1522 aa22.48■■□□□ 1.19
CTNS-208ENST00000574218 EIF4G3O43432 1585 aaKnown RBP22.48■■□□□ 1.19
CTNS-208ENST00000574218 ABCC8Q09428 1581 aa22.46■■□□□ 1.19
CTNS-208ENST00000574218 CCDC88BA6NC98 1476 aa22.46■■□□□ 1.19
CTNS-208ENST00000574218 CHD1O14646 1710 aa22.43■■□□□ 1.18
CTNS-208ENST00000574218 DNMBPQ6XZF7 1577 aa22.41■■□□□ 1.18
CTNS-208ENST00000574218 CYB5RLQ6IPT4 315 aa22.37■■□□□ 1.17
CTNS-208ENST00000574218 TARBP1Q13395 1621 aaKnown RBP22.31■■□□□ 1.16
CTNS-208ENST00000574218 TRHP20396 242 aaPredicted RBP22.3■■□□□ 1.16
CTNS-208ENST00000574218 FBLN2P98095 1184 aa22.29■■□□□ 1.16
CTNS-208ENST00000574218 AQRO60306 1485 aaKnown RBP eCLIP22.28■■□□□ 1.16
CTNS-208ENST00000574218 ARAP1Q96P48 1450 aa22.25■■□□□ 1.15
CTNS-208ENST00000574218 POLA1P09884 1462 aaPredicted RBP22.22■■□□□ 1.15
CTNS-208ENST00000574218 WDR97A6NE52 1622 aa22.13■■□□□ 1.13
CTNS-208ENST00000574218 RAD54L2Q9Y4B4 1467 aa22.12■■□□□ 1.13
CTNS-208ENST00000574218 SOGA1O94964 1423 aa22.12■■□□□ 1.13
CTNS-208ENST00000574218 SYNJ1O43426 1573 aa22.1■■□□□ 1.13
CTNS-208ENST00000574218 SNAPC4Q5SXM2 1469 aa22.09■■□□□ 1.13
CTNS-208ENST00000574218 TDRD9Q8NDG6 1382 aaKnown RBP22.09■■□□□ 1.13
CTNS-208ENST00000574218 CLASP1Q7Z460 1538 aa22.06■■□□□ 1.12
CTNS-208ENST00000574218 CHMP7Q8WUX9 453 aaPredicted RBP22.05■■□□□ 1.12
CTNS-208ENST00000574218 FGD5Q6ZNL6 1462 aa22.04■■□□□ 1.12
CTNS-208ENST00000574218 MAGI1Q96QZ7 1491 aaPredicted RBP22.03■■□□□ 1.12
CTNS-208ENST00000574218 GRIN2BQ13224 1484 aa21.99■■□□□ 1.11
CTNS-208ENST00000574218 PBRM1Q86U86 1689 aa21.98■■□□□ 1.11
CTNS-208ENST00000574218 SYNJ2O15056 1496 aa21.96■■□□□ 1.11
CTNS-208ENST00000574218 CUX1P39880 1505 aa21.94■■□□□ 1.1
CTNS-208ENST00000574218 GAPVD1Q14C86 1478 aa21.87■■□□□ 1.09
CTNS-208ENST00000574218 ABCA5Q8WWZ7 1642 aa21.8■■□□□ 1.08
CTNS-208ENST00000574218 ABCA10Q8WWZ4 1543 aa21.75■■□□□ 1.07
CTNS-208ENST00000574218 GRIN2AQ12879 1464 aa21.7■■□□□ 1.06
CTNS-208ENST00000574218 ADAMTS12P58397 1594 aa21.67■■□□□ 1.06
CTNS-208ENST00000574218 ERCC6L2Q5T890 1561 aa21.66■■□□□ 1.06
CTNS-208ENST00000574218 CEP170Q5SW79 1584 aa21.65■■□□□ 1.06
CTNS-208ENST00000574218 WRNQ14191 1432 aaPredicted RBP eCLIP21.62■■□□□ 1.05
CTNS-208ENST00000574218 NUP160Q12769 1436 aa21.6■■□□□ 1.05
CTNS-208ENST00000574218 SHROOM2Q13796 1616 aa21.59■■□□□ 1.05
CTNS-208ENST00000574218 KIF13AQ9H1H9 1805 aa21.57■■□□□ 1.04
CTNS-208ENST00000574218 BIVM-ERCC5R4GMW8 1640 aa21.57■■□□□ 1.04
CTNS-208ENST00000574218 FHAD1B1AJZ9 1412 aa21.56■■□□□ 1.04
CTNS-208ENST00000574218 TOP2BQ02880 1626 aa21.54■■□□□ 1.04
CTNS-208ENST00000574218 ERICH3Q5RHP9 1530 aa21.52■■□□□ 1.04
CTNS-208ENST00000574218 SUPT5HO00267 1087 aaKnown RBP21.47■■□□□ 1.03
CTNS-208ENST00000574218 PRG4Q92954 1404 aaPredicted RBP21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms