RNA–Protein interactions for RNA: ENST00000574054.1

CHRNB1-206, Transcript of cholinergic receptor nicotinic beta 1 subunit, humanhuman

TSL 2

Gene CHRNB1, Length 583 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNB1-206ENST00000574054 NISCHQ9Y2I1 1504 aa52.5■■■■■ 6
CHRNB1-206ENST00000574054 CCDC180Q9P1Z9 1646 aa46.97■■■■■ 5.11
CHRNB1-206ENST00000574054 ABCC9O60706 1549 aa46.87■■■■■ 5.09
CHRNB1-206ENST00000574054 RB1CC1Q8TDY2 1594 aa44.66■■■■■ 4.74
CHRNB1-206ENST00000574054 NACADO15069 1562 aa44.39■■■■■ 4.7
CHRNB1-206ENST00000574054 DCAF8L2P0C7V8 631 aa44.36■■■■■ 4.69
CHRNB1-206ENST00000574054 MYO15BQ96JP2 1530 aa43.81■■■■■ 4.6
CHRNB1-206ENST00000574054 DNAJC5BQ9UF47 199 aa43.73■■■■■ 4.59
CHRNB1-206ENST00000574054 PABPN1Q86U42 306 aaKnown RBP eCLIP43.7■■■■■ 4.59
CHRNB1-206ENST00000574054 UNC13AQ9UPW8 1703 aa43.58■■■■■ 4.57
CHRNB1-206ENST00000574054 ZCCHC6Q5VYS8 1495 aaKnown RBP43.56■■■■■ 4.56
CHRNB1-206ENST00000574054 DCAF1Q9Y4B6 1507 aa43.34■■■■■ 4.53
CHRNB1-206ENST00000574054 BICRAQ9NZM4 1560 aa43.32■■■■■ 4.52
CHRNB1-206ENST00000574054 SCRIBQ14160 1630 aa42.92■■■■■ 4.46
CHRNB1-206ENST00000574054 SHROOM4Q9ULL8 1493 aa42.75■■■■■ 4.43
CHRNB1-206ENST00000574054 CC2D2AQ9P2K1 1620 aa42.3■■■■■ 4.36
CHRNB1-206ENST00000574054 EIF4G1Q04637 1599 aaKnown RBP42.27■■■■■ 4.36
CHRNB1-206ENST00000574054 CECR2Q9BXF3 1484 aa42.18■■■■■ 4.34
CHRNB1-206ENST00000574054 NCAPD3P42695 1498 aa40.96■■■■■ 4.15
CHRNB1-206ENST00000574054 SMARCA4P51532 1647 aa40.91■■■■■ 4.14
CHRNB1-206ENST00000574054 ATAD2BQ9ULI0 1458 aa40.9■■■■■ 4.14
CHRNB1-206ENST00000574054 SMARCA2P51531 1590 aa40.81■■■■■ 4.12
CHRNB1-206ENST00000574054 BAZ1AQ9NRL2 1556 aaPredicted RBP40.75■■■■■ 4.11
CHRNB1-206ENST00000574054 HMGXB3Q12766 1538 aa40.69■■■■■ 4.1
CHRNB1-206ENST00000574054 BAZ1BQ9UIG0 1483 aaKnown RBP40.56■■■■■ 4.08
CHRNB1-206ENST00000574054 ERCC6Q03468 1493 aa40.48■■■■■ 4.07
CHRNB1-206ENST00000574054 MROH2BQ7Z745 1585 aa40.48■■■■■ 4.07
CHRNB1-206ENST00000574054 PEG3Q9GZU2 1588 aa40.47■■■■■ 4.07
CHRNB1-206ENST00000574054 NESP48681 1621 aa40.31■■■■■ 4.04
CHRNB1-206ENST00000574054 CUX2O14529 1486 aa40.26■■■■■ 4.03
CHRNB1-206ENST00000574054 LAMC3Q9Y6N6 1575 aa40.01■■■■■ 4
CHRNB1-206ENST00000574054 WIZO95785 1651 aa39.99■■■■□ 3.99
CHRNB1-206ENST00000574054 DNAJC5Q9H3Z4 198 aa39.99■■■■□ 3.99
CHRNB1-206ENST00000574054 PDS5BQ9NTI5 1447 aa39.83■■■■□ 3.97
CHRNB1-206ENST00000574054 THOC2Q8NI27 1593 aaKnown RBP39.8■■■■□ 3.96
CHRNB1-206ENST00000574054 CADPSQ9ULU8 1353 aa39.78■■■■□ 3.96
CHRNB1-206ENST00000574054 KIF21AQ7Z4S6 1674 aa39.76■■■■□ 3.96
CHRNB1-206ENST00000574054 RSF1Q96T23 1441 aaPredicted RBP39.73■■■■□ 3.95
CHRNB1-206ENST00000574054 TOP2AP11388 1531 aaKnown RBP39.51■■■■□ 3.92
CHRNB1-206ENST00000574054 MRC2Q9UBG0 1479 aa39.47■■■■□ 3.91
CHRNB1-206ENST00000574054 CEP164Q9UPV0 1460 aa39.37■■■■□ 3.89
CHRNB1-206ENST00000574054 CFTRP13569 1480 aa39.35■■■■□ 3.89
CHRNB1-206ENST00000574054 FANCD2Q9BXW9 1451 aa39.34■■■■□ 3.89
CHRNB1-206ENST00000574054 WDR62O43379 1518 aa39.32■■■■□ 3.89
CHRNB1-206ENST00000574054 CCDC88BA6NC98 1476 aa39.08■■■■□ 3.85
CHRNB1-206ENST00000574054 URB2Q14146 1524 aaKnown RBP38.99■■■■□ 3.83
CHRNB1-206ENST00000574054 PRDM2Q13029 1718 aa38.92■■■■□ 3.82
CHRNB1-206ENST00000574054 TOPBP1Q92547 1522 aa38.61■■■■□ 3.77
CHRNB1-206ENST00000574054 IFT140Q96RY7 1462 aa38.56■■■■□ 3.76
CHRNB1-206ENST00000574054 ABCC8Q09428 1581 aa38.52■■■■□ 3.76
CHRNB1-206ENST00000574054 OSCARQ8IYS5 282 aa38.5■■■■□ 3.75
CHRNB1-206ENST00000574054 ZNF608Q9ULD9 1512 aaPredicted RBP38.48■■■■□ 3.75
CHRNB1-206ENST00000574054 DNMBPQ6XZF7 1577 aa38.48■■■■□ 3.75
CHRNB1-206ENST00000574054 TRIM41Q8WV44 630 aa38.43■■■■□ 3.74
CHRNB1-206ENST00000574054 EIF4G3O43432 1585 aaKnown RBP38.27■■■■□ 3.72
CHRNB1-206ENST00000574054 SUPT5HO00267 1087 aaKnown RBP38.24■■■■□ 3.71
CHRNB1-206ENST00000574054 POLA1P09884 1462 aaPredicted RBP38.22■■■■□ 3.71
CHRNB1-206ENST00000574054 TARBP1Q13395 1621 aaKnown RBP38.21■■■■□ 3.71
CHRNB1-206ENST00000574054 AQRO60306 1485 aaKnown RBP eCLIP38.17■■■■□ 3.7
CHRNB1-206ENST00000574054 RAD54L2Q9Y4B4 1467 aa38.11■■■■□ 3.69
CHRNB1-206ENST00000574054 SOGA1O94964 1423 aa38.08■■■■□ 3.69
CHRNB1-206ENST00000574054 FGD5Q6ZNL6 1462 aa38.03■■■■□ 3.68
CHRNB1-206ENST00000574054 CUX1P39880 1505 aa38.03■■■■□ 3.68
CHRNB1-206ENST00000574054 TDRD9Q8NDG6 1382 aaKnown RBP38■■■■□ 3.67
CHRNB1-206ENST00000574054 FBLN2P98095 1184 aa37.96■■■■□ 3.67
CHRNB1-206ENST00000574054 RIMBP3CA6NJZ7 1639 aa37.94■■■■□ 3.66
CHRNB1-206ENST00000574054 RIMBP3BA6NNM3 1639 aa37.94■■■■□ 3.66
CHRNB1-206ENST00000574054 RIMBP3Q9UFD9 1639 aa37.94■■■■□ 3.66
CHRNB1-206ENST00000574054 CHD1O14646 1710 aa37.92■■■■□ 3.66
CHRNB1-206ENST00000574054 ARHGEF11O15085 1522 aa37.85■■■■□ 3.65
CHRNB1-206ENST00000574054 WDR97A6NE52 1622 aa37.82■■■■□ 3.64
CHRNB1-206ENST00000574054 SNAPC4Q5SXM2 1469 aa37.8■■■■□ 3.64
CHRNB1-206ENST00000574054 GRIN2BQ13224 1484 aa37.71■■■■□ 3.63
CHRNB1-206ENST00000574054 CHMP7Q8WUX9 453 aaPredicted RBP37.68■■■■□ 3.62
CHRNB1-206ENST00000574054 MAGI1Q96QZ7 1491 aaPredicted RBP37.68■■■■□ 3.62
CHRNB1-206ENST00000574054 GAPVD1Q14C86 1478 aa37.62■■■■□ 3.61
CHRNB1-206ENST00000574054 CYB5RLQ6IPT4 315 aa37.61■■■■□ 3.61
CHRNB1-206ENST00000574054 ABCA10Q8WWZ4 1543 aa37.59■■■■□ 3.61
CHRNB1-206ENST00000574054 SYNJ2O15056 1496 aa37.56■■■■□ 3.6
CHRNB1-206ENST00000574054 PBRM1Q86U86 1689 aa37.54■■■■□ 3.6
CHRNB1-206ENST00000574054 WRNQ14191 1432 aaPredicted RBP eCLIP37.53■■■■□ 3.6
CHRNB1-206ENST00000574054 SYNJ1O43426 1573 aa37.52■■■■□ 3.6
CHRNB1-206ENST00000574054 ARAP1Q96P48 1450 aa37.51■■■■□ 3.59
CHRNB1-206ENST00000574054 ABCA5Q8WWZ7 1642 aa37.5■■■■□ 3.59
CHRNB1-206ENST00000574054 CLASP1Q7Z460 1538 aa37.49■■■■□ 3.59
CHRNB1-206ENST00000574054 TOP2BQ02880 1626 aa37.45■■■■□ 3.59
CHRNB1-206ENST00000574054 BIVM-ERCC5R4GMW8 1640 aa37.43■■■■□ 3.58
CHRNB1-206ENST00000574054 ADAMTS12P58397 1594 aa37.22■■■■□ 3.55
CHRNB1-206ENST00000574054 GRIN2AQ12879 1464 aa37.22■■■■□ 3.55
CHRNB1-206ENST00000574054 TRHP20396 242 aaPredicted RBP37.16■■■■□ 3.54
CHRNB1-206ENST00000574054 FHAD1B1AJZ9 1412 aa37.15■■■■□ 3.54
CHRNB1-206ENST00000574054 ERICH3Q5RHP9 1530 aa37.12■■■■□ 3.53
CHRNB1-206ENST00000574054 NUP160Q12769 1436 aa37.07■■■■□ 3.52
CHRNB1-206ENST00000574054 CEP170Q5SW79 1584 aa37.06■■■■□ 3.52
CHRNB1-206ENST00000574054 ERCC6L2Q5T890 1561 aa36.95■■■■□ 3.51
CHRNB1-206ENST00000574054 SHROOM2Q13796 1616 aa36.85■■■■□ 3.49
CHRNB1-206ENST00000574054 KIF27Q86VH2 1401 aa36.78■■■■□ 3.48
CHRNB1-206ENST00000574054 PRG4Q92954 1404 aaPredicted RBP36.75■■■■□ 3.47
CHRNB1-206ENST00000574054 JPH4Q96JJ6 628 aa36.73■■■■□ 3.47
CHRNB1-206ENST00000574054 IGF1RP08069 1367 aa36.72■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms