RNA–Protein interactions for RNA: ENST00000573577.5

RPAIN-213, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,282 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-213ENST00000573577 NISCHQ9Y2I1 1504 aa32.88■■■□□ 2.85
RPAIN-213ENST00000573577 CCDC180Q9P1Z9 1646 aa29.27■■■□□ 2.28
RPAIN-213ENST00000573577 ABCC9O60706 1549 aa28.73■■■□□ 2.19
RPAIN-213ENST00000573577 AEBP2Q6ZN18 517 aaPredicted RBP28.21■■■□□ 2.11
RPAIN-213ENST00000573577 RB1CC1Q8TDY2 1594 aa27.6■■■□□ 2.01
RPAIN-213ENST00000573577 NACADO15069 1562 aa27.55■■■□□ 2
RPAIN-213ENST00000573577 DCAF8L2P0C7V8 631 aa27.47■■□□□ 1.99
RPAIN-213ENST00000573577 CHIC1Q5VXU3 224 aa27.45■■□□□ 1.98
RPAIN-213ENST00000573577 ZCCHC6Q5VYS8 1495 aaKnown RBP27.38■■□□□ 1.97
RPAIN-213ENST00000573577 MYO15BQ96JP2 1530 aa27.37■■□□□ 1.97
RPAIN-213ENST00000573577 DCAF1Q9Y4B6 1507 aa27.21■■□□□ 1.95
RPAIN-213ENST00000573577 UNC13AQ9UPW8 1703 aa26.93■■□□□ 1.9
RPAIN-213ENST00000573577 PABPN1Q86U42 306 aaKnown RBP eCLIP26.82■■□□□ 1.88
RPAIN-213ENST00000573577 BICRAQ9NZM4 1560 aa26.76■■□□□ 1.87
RPAIN-213ENST00000573577 SCRIBQ14160 1630 aa26.7■■□□□ 1.86
RPAIN-213ENST00000573577 SHROOM4Q9ULL8 1493 aa26.51■■□□□ 1.83
RPAIN-213ENST00000573577 DNAJC5BQ9UF47 199 aa26.44■■□□□ 1.82
RPAIN-213ENST00000573577 EIF4G1Q04637 1599 aaKnown RBP26.07■■□□□ 1.76
RPAIN-213ENST00000573577 CC2D2AQ9P2K1 1620 aa25.98■■□□□ 1.75
RPAIN-213ENST00000573577 CECR2Q9BXF3 1484 aa25.84■■□□□ 1.73
RPAIN-213ENST00000573577 SMARCA4P51532 1647 aa25.53■■□□□ 1.68
RPAIN-213ENST00000573577 BAZ1AQ9NRL2 1556 aaPredicted RBP25.5■■□□□ 1.67
RPAIN-213ENST00000573577 NCAPD3P42695 1498 aa25.42■■□□□ 1.66
RPAIN-213ENST00000573577 ATAD2BQ9ULI0 1458 aa25.42■■□□□ 1.66
RPAIN-213ENST00000573577 SMARCA2P51531 1590 aa25.39■■□□□ 1.65
RPAIN-213ENST00000573577 MROH2BQ7Z745 1585 aa25.34■■□□□ 1.65
RPAIN-213ENST00000573577 HMGXB3Q12766 1538 aa25.3■■□□□ 1.64
RPAIN-213ENST00000573577 PEG3Q9GZU2 1588 aa25.3■■□□□ 1.64
RPAIN-213ENST00000573577 BAZ1BQ9UIG0 1483 aaKnown RBP25.21■■□□□ 1.63
RPAIN-213ENST00000573577 WIZO95785 1651 aa25.04■■□□□ 1.6
RPAIN-213ENST00000573577 RSF1Q96T23 1441 aaPredicted RBP25.02■■□□□ 1.6
RPAIN-213ENST00000573577 NESP48681 1621 aa24.83■■□□□ 1.57
RPAIN-213ENST00000573577 TOP2AP11388 1531 aaKnown RBP24.8■■□□□ 1.56
RPAIN-213ENST00000573577 ERCC6Q03468 1493 aa24.78■■□□□ 1.56
RPAIN-213ENST00000573577 LAMC3Q9Y6N6 1575 aa24.76■■□□□ 1.55
RPAIN-213ENST00000573577 CADPSQ9ULU8 1353 aa24.67■■□□□ 1.54
RPAIN-213ENST00000573577 PDS5BQ9NTI5 1447 aa24.61■■□□□ 1.53
RPAIN-213ENST00000573577 CUX2O14529 1486 aa24.56■■□□□ 1.52
RPAIN-213ENST00000573577 KIF21AQ7Z4S6 1674 aa24.53■■□□□ 1.52
RPAIN-213ENST00000573577 CFTRP13569 1480 aa24.51■■□□□ 1.51
RPAIN-213ENST00000573577 CCDC88BA6NC98 1476 aa24.5■■□□□ 1.51
RPAIN-213ENST00000573577 THOC2Q8NI27 1593 aaKnown RBP24.49■■□□□ 1.51
RPAIN-213ENST00000573577 FANCD2Q9BXW9 1451 aa24.4■■□□□ 1.5
RPAIN-213ENST00000573577 CEP164Q9UPV0 1460 aa24.38■■□□□ 1.49
RPAIN-213ENST00000573577 MRC2Q9UBG0 1479 aa24.37■■□□□ 1.49
RPAIN-213ENST00000573577 SUPT5HO00267 1087 aaKnown RBP24.29■■□□□ 1.48
RPAIN-213ENST00000573577 PRDM2Q13029 1718 aa24.29■■□□□ 1.48
RPAIN-213ENST00000573577 WDR62O43379 1518 aa24.29■■□□□ 1.48
RPAIN-213ENST00000573577 PHF23Q9BUL5 403 aaPredicted RBP24.22■■□□□ 1.47
RPAIN-213ENST00000573577 URB2Q14146 1524 aaKnown RBP24.16■■□□□ 1.46
RPAIN-213ENST00000573577 TOPBP1Q92547 1522 aa24■■□□□ 1.43
RPAIN-213ENST00000573577 ABCC8Q09428 1581 aa23.98■■□□□ 1.43
RPAIN-213ENST00000573577 DNMBPQ6XZF7 1577 aa23.96■■□□□ 1.43
RPAIN-213ENST00000573577 DNAJC5Q9H3Z4 198 aa23.89■■□□□ 1.41
RPAIN-213ENST00000573577 IFT140Q96RY7 1462 aa23.87■■□□□ 1.41
RPAIN-213ENST00000573577 SENP3Q9H4L4 574 aaPredicted RBP23.8■■□□□ 1.4
RPAIN-213ENST00000573577 POLA1P09884 1462 aaPredicted RBP23.79■■□□□ 1.4
RPAIN-213ENST00000573577 CUX1P39880 1505 aa23.78■■□□□ 1.4
RPAIN-213ENST00000573577 ZNF608Q9ULD9 1512 aaPredicted RBP23.76■■□□□ 1.39
RPAIN-213ENST00000573577 TARBP1Q13395 1621 aaKnown RBP23.73■■□□□ 1.39
RPAIN-213ENST00000573577 FGD5Q6ZNL6 1462 aa23.71■■□□□ 1.39
RPAIN-213ENST00000573577 RAD54L2Q9Y4B4 1467 aa23.68■■□□□ 1.38
RPAIN-213ENST00000573577 SOGA1O94964 1423 aa23.67■■□□□ 1.38
RPAIN-213ENST00000573577 EIF4G3O43432 1585 aaKnown RBP23.67■■□□□ 1.38
RPAIN-213ENST00000573577 AQRO60306 1485 aaKnown RBP eCLIP23.62■■□□□ 1.373e-7■■■□□ 18.2
RPAIN-213ENST00000573577 WRNQ14191 1432 aaPredicted RBP eCLIP23.59■■□□□ 1.37
RPAIN-213ENST00000573577 TDRD9Q8NDG6 1382 aaKnown RBP23.56■■□□□ 1.36
RPAIN-213ENST00000573577 WDR97A6NE52 1622 aa23.55■■□□□ 1.36
RPAIN-213ENST00000573577 TOP2BQ02880 1626 aa23.55■■□□□ 1.36
RPAIN-213ENST00000573577 BIVM-ERCC5R4GMW8 1640 aa23.54■■□□□ 1.36
RPAIN-213ENST00000573577 SYNJ1O43426 1573 aa23.53■■□□□ 1.36
RPAIN-213ENST00000573577 OSCARQ8IYS5 282 aa23.5■■□□□ 1.35
RPAIN-213ENST00000573577 ABCA10Q8WWZ4 1543 aa23.49■■□□□ 1.35
RPAIN-213ENST00000573577 GRIN2BQ13224 1484 aa23.43■■□□□ 1.34
RPAIN-213ENST00000573577 GAPVD1Q14C86 1478 aa23.41■■□□□ 1.34
RPAIN-213ENST00000573577 SNAPC4Q5SXM2 1469 aa23.41■■□□□ 1.34
RPAIN-213ENST00000573577 ABCA5Q8WWZ7 1642 aa23.4■■□□□ 1.34
RPAIN-213ENST00000573577 MAGI1Q96QZ7 1491 aaPredicted RBP23.37■■□□□ 1.33
RPAIN-213ENST00000573577 CHD1O14646 1710 aa23.36■■□□□ 1.33
RPAIN-213ENST00000573577 PBRM1Q86U86 1689 aa23.35■■□□□ 1.33
RPAIN-213ENST00000573577 FBLN2P98095 1184 aa23.34■■□□□ 1.33
RPAIN-213ENST00000573577 SYNJ2O15056 1496 aa23.29■■□□□ 1.32
RPAIN-213ENST00000573577 CHMP7Q8WUX9 453 aaPredicted RBP23.27■■□□□ 1.32
RPAIN-213ENST00000573577 ERICH3Q5RHP9 1530 aa23.2■■□□□ 1.3
RPAIN-213ENST00000573577 ADAMTS12P58397 1594 aa23.18■■□□□ 1.3
RPAIN-213ENST00000573577 ARHGEF11O15085 1522 aa23.14■■□□□ 1.3
RPAIN-213ENST00000573577 CLASP1Q7Z460 1538 aa23.14■■□□□ 1.3
RPAIN-213ENST00000573577 RIMBP3CA6NJZ7 1639 aa23.14■■□□□ 1.29
RPAIN-213ENST00000573577 RIMBP3BA6NNM3 1639 aa23.14■■□□□ 1.29
RPAIN-213ENST00000573577 RIMBP3Q9UFD9 1639 aa23.14■■□□□ 1.29
RPAIN-213ENST00000573577 FHAD1B1AJZ9 1412 aa23.14■■□□□ 1.29
RPAIN-213ENST00000573577 GRIN2AQ12879 1464 aa23.12■■□□□ 1.29
RPAIN-213ENST00000573577 KIF27Q86VH2 1401 aa23.11■■□□□ 1.29
RPAIN-213ENST00000573577 TRIM41Q8WV44 630 aa23.07■■□□□ 1.28
RPAIN-213ENST00000573577 NUP160Q12769 1436 aa23.02■■□□□ 1.28
RPAIN-213ENST00000573577 IGF1RP08069 1367 aa23.01■■□□□ 1.27
RPAIN-213ENST00000573577 CEP170Q5SW79 1584 aa23.01■■□□□ 1.27
RPAIN-213ENST00000573577 CUL7Q14999 1698 aa22.97■■□□□ 1.27
RPAIN-213ENST00000573577 ARAP1Q96P48 1450 aa22.95■■□□□ 1.26
RPAIN-213ENST00000573577 CYB5RLQ6IPT4 315 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms