RNA–Protein interactions for RNA: ENST00000573095.1

HCFC1R1-204, Transcript of host cell factor C1 regulator 1, humanhuman

TSL 3

Gene HCFC1R1, Length 828 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1R1-204ENST00000573095 NISCHQ9Y2I1 1504 aa48.5■■■■■ 5.35
HCFC1R1-204ENST00000573095 CCDC180Q9P1Z9 1646 aa43.57■■■■■ 4.57
HCFC1R1-204ENST00000573095 ABCC9O60706 1549 aa43.22■■■■■ 4.51
HCFC1R1-204ENST00000573095 RB1CC1Q8TDY2 1594 aa41.31■■■■■ 4.2
HCFC1R1-204ENST00000573095 NACADO15069 1562 aa41.08■■■■■ 4.17
HCFC1R1-204ENST00000573095 MYO15BQ96JP2 1530 aa40.62■■■■■ 4.09
HCFC1R1-204ENST00000573095 DCAF8L2P0C7V8 631 aa40.6■■■■■ 4.09
HCFC1R1-204ENST00000573095 UNC13AQ9UPW8 1703 aa40.44■■■■■ 4.06
HCFC1R1-204ENST00000573095 ZCCHC6Q5VYS8 1495 aaKnown RBP40.28■■■■■ 4.04
HCFC1R1-204ENST00000573095 DNAJC5BQ9UF47 199 aa40.28■■■■■ 4.04
HCFC1R1-204ENST00000573095 PABPN1Q86U42 306 aaKnown RBP eCLIP40.15■■■■■ 4.02
HCFC1R1-204ENST00000573095 DCAF1Q9Y4B6 1507 aa40.15■■■■■ 4.02
HCFC1R1-204ENST00000573095 BICRAQ9NZM4 1560 aa40.1■■■■■ 4.01
HCFC1R1-204ENST00000573095 SHROOM4Q9ULL8 1493 aa39.67■■■■□ 3.94
HCFC1R1-204ENST00000573095 SCRIBQ14160 1630 aa39.6■■■■□ 3.93
HCFC1R1-204ENST00000573095 CC2D2AQ9P2K1 1620 aa39.12■■■■□ 3.85
HCFC1R1-204ENST00000573095 EIF4G1Q04637 1599 aaKnown RBP39.1■■■■□ 3.85
HCFC1R1-204ENST00000573095 CECR2Q9BXF3 1484 aa38.93■■■■□ 3.82
HCFC1R1-204ENST00000573095 NCAPD3P42695 1498 aa37.87■■■■□ 3.65
HCFC1R1-204ENST00000573095 SMARCA4P51532 1647 aa37.83■■■■□ 3.65
HCFC1R1-204ENST00000573095 ATAD2BQ9ULI0 1458 aa37.77■■■■□ 3.64
HCFC1R1-204ENST00000573095 SMARCA2P51531 1590 aa37.73■■■■□ 3.63
HCFC1R1-204ENST00000573095 HMGXB3Q12766 1538 aa37.69■■■■□ 3.62
HCFC1R1-204ENST00000573095 BAZ1AQ9NRL2 1556 aaPredicted RBP37.67■■■■□ 3.62
HCFC1R1-204ENST00000573095 PEG3Q9GZU2 1588 aa37.51■■■■□ 3.59
HCFC1R1-204ENST00000573095 BAZ1BQ9UIG0 1483 aaKnown RBP37.43■■■■□ 3.58
HCFC1R1-204ENST00000573095 MROH2BQ7Z745 1585 aa37.35■■■■□ 3.57
HCFC1R1-204ENST00000573095 ERCC6Q03468 1493 aa37.32■■■■□ 3.56
HCFC1R1-204ENST00000573095 CUX2O14529 1486 aa37.26■■■■□ 3.56
HCFC1R1-204ENST00000573095 NESP48681 1621 aa37.18■■■■□ 3.54
HCFC1R1-204ENST00000573095 LAMC3Q9Y6N6 1575 aa37.05■■■■□ 3.52
HCFC1R1-204ENST00000573095 WIZO95785 1651 aa36.93■■■■□ 3.5
HCFC1R1-204ENST00000573095 DNAJC5Q9H3Z4 198 aa36.91■■■■□ 3.5
HCFC1R1-204ENST00000573095 THOC2Q8NI27 1593 aaKnown RBP36.9■■■■□ 3.5
HCFC1R1-204ENST00000573095 KIF21AQ7Z4S6 1674 aa36.81■■■■□ 3.48
HCFC1R1-204ENST00000573095 PDS5BQ9NTI5 1447 aa36.75■■■■□ 3.47
HCFC1R1-204ENST00000573095 CADPSQ9ULU8 1353 aa36.69■■■■□ 3.46
HCFC1R1-204ENST00000573095 RSF1Q96T23 1441 aaPredicted RBP36.61■■■■□ 3.45
HCFC1R1-204ENST00000573095 TOP2AP11388 1531 aaKnown RBP36.51■■■■□ 3.44
HCFC1R1-204ENST00000573095 MRC2Q9UBG0 1479 aa36.46■■■■□ 3.43
HCFC1R1-204ENST00000573095 WDR62O43379 1518 aa36.41■■■■□ 3.42
HCFC1R1-204ENST00000573095 CFTRP13569 1480 aa36.36■■■■□ 3.41
HCFC1R1-204ENST00000573095 CEP164Q9UPV0 1460 aa36.35■■■■□ 3.41
HCFC1R1-204ENST00000573095 FANCD2Q9BXW9 1451 aa36.3■■■■□ 3.4
HCFC1R1-204ENST00000573095 PRDM2Q13029 1718 aa36.15■■■■□ 3.38
HCFC1R1-204ENST00000573095 CCDC88BA6NC98 1476 aa36.01■■■■□ 3.36
HCFC1R1-204ENST00000573095 URB2Q14146 1524 aaKnown RBP36■■■■□ 3.35
HCFC1R1-204ENST00000573095 TOPBP1Q92547 1522 aa35.65■■■■□ 3.3
HCFC1R1-204ENST00000573095 IFT140Q96RY7 1462 aa35.6■■■■□ 3.29
HCFC1R1-204ENST00000573095 ABCC8Q09428 1581 aa35.59■■■■□ 3.29
HCFC1R1-204ENST00000573095 DNMBPQ6XZF7 1577 aa35.58■■■■□ 3.29
HCFC1R1-204ENST00000573095 ZNF608Q9ULD9 1512 aaPredicted RBP35.5■■■■□ 3.27
HCFC1R1-204ENST00000573095 OSCARQ8IYS5 282 aa35.44■■■■□ 3.26
HCFC1R1-204ENST00000573095 EIF4G3O43432 1585 aaKnown RBP35.41■■■■□ 3.26
HCFC1R1-204ENST00000573095 TARBP1Q13395 1621 aaKnown RBP35.36■■■■□ 3.25
HCFC1R1-204ENST00000573095 TRIM41Q8WV44 630 aa35.3■■■■□ 3.24
HCFC1R1-204ENST00000573095 POLA1P09884 1462 aaPredicted RBP35.29■■■■□ 3.24
HCFC1R1-204ENST00000573095 AQRO60306 1485 aaKnown RBP eCLIP35.16■■■■□ 3.222e-10■■■■■ 40.6
HCFC1R1-204ENST00000573095 CHD1O14646 1710 aa35.12■■■■□ 3.21
HCFC1R1-204ENST00000573095 CUX1P39880 1505 aa35.11■■■■□ 3.21
HCFC1R1-204ENST00000573095 RAD54L2Q9Y4B4 1467 aa35.1■■■■□ 3.21
HCFC1R1-204ENST00000573095 RIMBP3CA6NJZ7 1639 aa35.1■■■■□ 3.21
HCFC1R1-204ENST00000573095 RIMBP3BA6NNM3 1639 aa35.1■■■■□ 3.21
HCFC1R1-204ENST00000573095 RIMBP3Q9UFD9 1639 aa35.1■■■■□ 3.21
HCFC1R1-204ENST00000573095 FGD5Q6ZNL6 1462 aa35.09■■■■□ 3.21
HCFC1R1-204ENST00000573095 WDR97A6NE52 1622 aa35.09■■■■□ 3.21
HCFC1R1-204ENST00000573095 SOGA1O94964 1423 aa35.06■■■■□ 3.2
HCFC1R1-204ENST00000573095 ARHGEF11O15085 1522 aa35■■■■□ 3.19
HCFC1R1-204ENST00000573095 SUPT5HO00267 1087 aaKnown RBP34.95■■■■□ 3.19
HCFC1R1-204ENST00000573095 TDRD9Q8NDG6 1382 aaKnown RBP34.94■■■■□ 3.18
HCFC1R1-204ENST00000573095 SNAPC4Q5SXM2 1469 aa34.87■■■■□ 3.17
HCFC1R1-204ENST00000573095 MAGI1Q96QZ7 1491 aaPredicted RBP34.83■■■■□ 3.17
HCFC1R1-204ENST00000573095 GRIN2BQ13224 1484 aa34.8■■■■□ 3.16
HCFC1R1-204ENST00000573095 FBLN2P98095 1184 aa34.8■■■■□ 3.16
HCFC1R1-204ENST00000573095 PBRM1Q86U86 1689 aa34.77■■■■□ 3.16
HCFC1R1-204ENST00000573095 ABCA10Q8WWZ4 1543 aa34.73■■■■□ 3.15
HCFC1R1-204ENST00000573095 CLASP1Q7Z460 1538 aa34.71■■■■□ 3.15
HCFC1R1-204ENST00000573095 ABCA5Q8WWZ7 1642 aa34.71■■■■□ 3.15
HCFC1R1-204ENST00000573095 GAPVD1Q14C86 1478 aa34.69■■■■□ 3.14
HCFC1R1-204ENST00000573095 SYNJ1O43426 1573 aa34.69■■■■□ 3.14
HCFC1R1-204ENST00000573095 SYNJ2O15056 1496 aa34.68■■■■□ 3.14
HCFC1R1-204ENST00000573095 ARAP1Q96P48 1450 aa34.66■■■■□ 3.14
HCFC1R1-204ENST00000573095 BIVM-ERCC5R4GMW8 1640 aa34.66■■■■□ 3.14
HCFC1R1-204ENST00000573095 TOP2BQ02880 1626 aa34.62■■■■□ 3.13
HCFC1R1-204ENST00000573095 CHMP7Q8WUX9 453 aaPredicted RBP34.61■■■■□ 3.13
HCFC1R1-204ENST00000573095 WRNQ14191 1432 aaPredicted RBP eCLIP34.56■■■■□ 3.12
HCFC1R1-204ENST00000573095 CYB5RLQ6IPT4 315 aa34.56■■■■□ 3.12
HCFC1R1-204ENST00000573095 ADAMTS12P58397 1594 aa34.44■■■■□ 3.1
HCFC1R1-204ENST00000573095 GRIN2AQ12879 1464 aa34.37■■■■□ 3.09
HCFC1R1-204ENST00000573095 ERICH3Q5RHP9 1530 aa34.31■■■■□ 3.08
HCFC1R1-204ENST00000573095 NUP160Q12769 1436 aa34.27■■■■□ 3.08
HCFC1R1-204ENST00000573095 FHAD1B1AJZ9 1412 aa34.26■■■■□ 3.07
HCFC1R1-204ENST00000573095 CEP170Q5SW79 1584 aa34.26■■■■□ 3.07
HCFC1R1-204ENST00000573095 SHROOM2Q13796 1616 aa34.15■■■■□ 3.06
HCFC1R1-204ENST00000573095 ERCC6L2Q5T890 1561 aa34.11■■■■□ 3.05
HCFC1R1-204ENST00000573095 TRHP20396 242 aaPredicted RBP34.11■■■■□ 3.05
HCFC1R1-204ENST00000573095 RUSC2Q8N2Y8 1516 aa33.96■■■■□ 3.03
HCFC1R1-204ENST00000573095 CUL7Q14999 1698 aa33.89■■■■□ 3.02
HCFC1R1-204ENST00000573095 KIF27Q86VH2 1401 aa33.88■■■■□ 3.01
HCFC1R1-204ENST00000573095 PRG4Q92954 1404 aaPredicted RBP33.84■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 125.2 ms