RNA–Protein interactions for RNA: ENST00000571643.5

CDC27-213, Transcript of cell division cycle 27, humanhuman

TSL 3

Gene CDC27, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC27-213ENST00000571643 AEBP2Q6ZN18 517 aaPredicted RBP22.25■■□□□ 1.15
CDC27-213ENST00000571643 CHIC1Q5VXU3 224 aa21.14■□□□□ 0.97
CDC27-213ENST00000571643 SENP3Q9H4L4 574 aaPredicted RBP19.05■□□□□ 0.64
CDC27-213ENST00000571643 PHF23Q9BUL5 403 aaPredicted RBP18.71■□□□□ 0.59
CDC27-213ENST00000571643 FOXD1Q16676 465 aa17.7■□□□□ 0.42
CDC27-213ENST00000571643 PLPPR3Q6T4P5 718 aa16.86■□□□□ 0.29
CDC27-213ENST00000571643 MSH5O43196 834 aa16.64■□□□□ 0.25
CDC27-213ENST00000571643 PIAS4Q8N2W9 510 aaPredicted RBP16.5■□□□□ 0.23
CDC27-213ENST00000571643 PPP6R1Q9UPN7 881 aa16.48■□□□□ 0.23
CDC27-213ENST00000571643 ADRA2BP18089 450 aa16.38■□□□□ 0.21
CDC27-213ENST00000571643 POTEDQ86YR6 584 aa16.25■□□□□ 0.19
CDC27-213ENST00000571643 DMRT2Q9Y5R5 561 aa15.11■□□□□ 0.01
CDC27-213ENST00000571643 SCAF1Q9H7N4 1312 aaKnown RBP15.08■□□□□ 0
CDC27-213ENST00000571643 MAPK8IP2Q13387 824 aaPredicted RBP15.03■□□□□ -0
CDC27-213ENST00000571643 PPP4R3CPQ6ZMV5 832 aa14.72□□□□□ -0.05
CDC27-213ENST00000571643 HOXD11P31277 338 aaPredicted RBP14.56□□□□□ -0.08
CDC27-213ENST00000571643 CNKSR2Q8WXI2 1034 aa14.5□□□□□ -0.09
CDC27-213ENST00000571643 RNF216Q9NWF9 866 aaPredicted RBP14.41□□□□□ -0.1
CDC27-213ENST00000571643 DCAF8L1A6NGE4 600 aa14.27□□□□□ -0.13
CDC27-213ENST00000571643 NCBP3Q53F19 620 aaKnown RBP14.2□□□□□ -0.14
CDC27-213ENST00000571643 RNF39Q9H2S5 420 aa14.2□□□□□ -0.14
CDC27-213ENST00000571643 DNAJC5BQ9UF47 199 aa14.2□□□□□ -0.14
CDC27-213ENST00000571643 CACNB1Q02641 598 aaPredicted RBP14.18□□□□□ -0.14
CDC27-213ENST00000571643 C1QBPQ07021 282 aaKnown RBP14□□□□□ -0.17
CDC27-213ENST00000571643 NPM3O75607 178 aaKnown RBP13.96□□□□□ -0.17
CDC27-213ENST00000571643 KCNA4P22459 653 aa13.87□□□□□ -0.19
CDC27-213ENST00000571643 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.73□□□□□ -0.21
CDC27-213ENST00000571643 U3KPZ7 1027 aaPredicted RBP13.51□□□□□ -0.25
CDC27-213ENST00000571643 SLC4A2P04920 1241 aa13.35□□□□□ -0.27
CDC27-213ENST00000571643 SPINK5Q9NQ38 1064 aaPredicted RBP13.26□□□□□ -0.29
CDC27-213ENST00000571643 DSG3P32926 999 aa13.24□□□□□ -0.29
CDC27-213ENST00000571643 SLC4A1APQ9BWU0 796 aaKnown RBP13.23□□□□□ -0.29
CDC27-213ENST00000571643 CAPN15O75808 1086 aa13.21□□□□□ -0.29
CDC27-213ENST00000571643 APLP2Q06481 763 aa13.18□□□□□ -0.3
CDC27-213ENST00000571643 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.16□□□□□ -0.3
CDC27-213ENST00000571643 HNRNPUL2Q1KMD3 747 aaKnown RBP13.16□□□□□ -0.3
CDC27-213ENST00000571643 ZNF219Q9P2Y4 722 aaPredicted RBP13.08□□□□□ -0.32
CDC27-213ENST00000571643 SAMD1Q6SPF0 538 aaPredicted RBP13.07□□□□□ -0.32
CDC27-213ENST00000571643 TRHP20396 242 aaPredicted RBP12.96□□□□□ -0.33
CDC27-213ENST00000571643 MYCNP04198 464 aaPredicted RBP12.95□□□□□ -0.34
CDC27-213ENST00000571643 FOXD4L1Q9NU39 408 aa12.94□□□□□ -0.34
CDC27-213ENST00000571643 ABCB7O75027 752 aa12.87□□□□□ -0.35
CDC27-213ENST00000571643 POTEHQ6S545 545 aa12.73□□□□□ -0.37
CDC27-213ENST00000571643 ZBTB22O15209 634 aa12.7□□□□□ -0.38
CDC27-213ENST00000571643 RBM42Q9BTD8 480 aaKnown RBP12.68□□□□□ -0.38
CDC27-213ENST00000571643 POLA2Q14181 598 aa12.65□□□□□ -0.38
CDC27-213ENST00000571643 ATXN8OSP0DMR3 200 aa12.56□□□□□ -0.4
CDC27-213ENST00000571643 ATF5Q9Y2D1 282 aaPredicted RBP12.56□□□□□ -0.4
CDC27-213ENST00000571643 ZBTB12Q9Y330 459 aaPredicted RBP12.53□□□□□ -0.4
CDC27-213ENST00000571643 EHMT2Q96KQ7 1210 aa12.5□□□□□ -0.41
CDC27-213ENST00000571643 CSRNP3Q8WYN3 585 aa12.46□□□□□ -0.41
CDC27-213ENST00000571643 CHRDL2Q6WN34 429 aa12.37□□□□□ -0.43
CDC27-213ENST00000571643 AKT1S1Q96B36 256 aa12.36□□□□□ -0.43
CDC27-213ENST00000571643 OSCARQ8IYS5 282 aa12.28□□□□□ -0.44
CDC27-213ENST00000571643 REM2Q8IYK8 340 aaPredicted RBP12.2□□□□□ -0.46
CDC27-213ENST00000571643 SPDYE2BA6NHP3 402 aa12.11□□□□□ -0.47
CDC27-213ENST00000571643 SPDYE6P0CI01 402 aa12.11□□□□□ -0.47
CDC27-213ENST00000571643 FBLN2P98095 1184 aa12.11□□□□□ -0.47
CDC27-213ENST00000571643 SPDYE2Q495Y8 402 aa12.11□□□□□ -0.47
CDC27-213ENST00000571643 PITPNM1O00562 1244 aa12.07□□□□□ -0.48
CDC27-213ENST00000571643 PIP4P2Q8N4L2 257 aa12.06□□□□□ -0.48
CDC27-213ENST00000571643 MKRN4PQ13434 485 aaPredicted RBP12.04□□□□□ -0.48
CDC27-213ENST00000571643 FXR2P51116 673 aaKnown RBP eCLIP12.02□□□□□ -0.49
CDC27-213ENST00000571643 SSUH2Q9Y2M2 353 aa11.98□□□□□ -0.49
CDC27-213ENST00000571643 SP7Q8TDD2 431 aaPredicted RBP11.93□□□□□ -0.5
CDC27-213ENST00000571643 SPDYE1Q8NFV5 336 aaPredicted RBP11.88□□□□□ -0.51
CDC27-213ENST00000571643 ZNF692Q9BU19 519 aaPredicted RBP11.86□□□□□ -0.51
CDC27-213ENST00000571643 HAX1O00165 279 aa11.76□□□□□ -0.53
CDC27-213ENST00000571643 PRKAR2AP13861 404 aaKnown RBP11.72□□□□□ -0.53
CDC27-213ENST00000571643 CLEC11AQ9Y240 323 aa11.72□□□□□ -0.53
CDC27-213ENST00000571643 PABPN1Q86U42 306 aaKnown RBP eCLIP11.68□□□□□ -0.54
CDC27-213ENST00000571643 C19orf67A6NJJ6 358 aa11.64□□□□□ -0.55
CDC27-213ENST00000571643 EVX2Q03828 476 aa11.64□□□□□ -0.55
CDC27-213ENST00000571643 SPDYE4A6NLX3 237 aa11.59□□□□□ -0.55
CDC27-213ENST00000571643 PRR29P0C7W0 189 aa11.58□□□□□ -0.56
CDC27-213ENST00000571643 CHADLQ6NUI6 762 aa11.52□□□□□ -0.57
CDC27-213ENST00000571643 STAG3Q9UJ98 1225 aa11.44□□□□□ -0.58
CDC27-213ENST00000571643 FARP1Q9Y4F1 1045 aaPredicted RBP11.44□□□□□ -0.58
CDC27-213ENST00000571643 GABBR2O75899 941 aa11.41□□□□□ -0.58
CDC27-213ENST00000571643 CLCN6P51797 869 aa11.37□□□□□ -0.59
CDC27-213ENST00000571643 CD44P16070 742 aaKnown RBP11.36□□□□□ -0.59
CDC27-213ENST00000571643 PROM2Q8N271 834 aa11.36□□□□□ -0.59
CDC27-213ENST00000571643 CREBZFQ9NS37 354 aa11.34□□□□□ -0.59
CDC27-213ENST00000571643 FKBP8Q14318 412 aa11.33□□□□□ -0.6
CDC27-213ENST00000571643 ZNF579Q8NAF0 562 aaKnown RBP11.28□□□□□ -0.6
CDC27-213ENST00000571643 MNX1P50219 401 aaPredicted RBP11.2□□□□□ -0.62
CDC27-213ENST00000571643 POTEIP0CG38 1075 aa11.19□□□□□ -0.62
CDC27-213ENST00000571643 ZRANB1Q9UGI0 708 aa11.16□□□□□ -0.62
CDC27-213ENST00000571643 LHX8Q68G74 356 aa11.14□□□□□ -0.63
CDC27-213ENST00000571643 PLEKHG5O94827 1062 aa11.13□□□□□ -0.63
CDC27-213ENST00000571643 FBXO3Q9UK99 471 aa11.13□□□□□ -0.63
CDC27-213ENST00000571643 NPM1P06748 294 aaKnown RBP eCLIP11.12□□□□□ -0.63
CDC27-213ENST00000571643 PAK3O75914 559 aaPredicted RBP11.09□□□□□ -0.63
CDC27-213ENST00000571643 DCBLD2Q96PD2 775 aa11.06□□□□□ -0.64
CDC27-213ENST00000571643 GALR2O43603 387 aaPredicted RBP11.04□□□□□ -0.64
CDC27-213ENST00000571643 MIER1Q8N108 512 aa11.01□□□□□ -0.65
CDC27-213ENST00000571643 ZBTB47Q9UFB7 747 aaPredicted RBP11.01□□□□□ -0.65
CDC27-213ENST00000571643 PLCD3Q8N3E9 789 aa11□□□□□ -0.65
CDC27-213ENST00000571643 PHF12Q96QT6 1004 aa11□□□□□ -0.65
CDC27-213ENST00000571643 CCDC61Q9Y6R9 512 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms