RNA–Protein interactions for RNA: ENST00000571442.5

SMG6-209, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 588 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-209ENST00000571442 NISCHQ9Y2I1 1504 aa17.04■□□□□ 0.32
SMG6-209ENST00000571442 CCDC180Q9P1Z9 1646 aa15.1■□□□□ 0.01
SMG6-209ENST00000571442 ABCC9O60706 1549 aa14.77□□□□□ -0.04
SMG6-209ENST00000571442 ZCCHC6Q5VYS8 1495 aaKnown RBP14.22□□□□□ -0.13
SMG6-209ENST00000571442 DCAF8L2P0C7V8 631 aa14.18□□□□□ -0.14
SMG6-209ENST00000571442 NACADO15069 1562 aa14.17□□□□□ -0.14
SMG6-209ENST00000571442 RB1CC1Q8TDY2 1594 aa14.16□□□□□ -0.14
SMG6-209ENST00000571442 MYO15BQ96JP2 1530 aa14.08□□□□□ -0.16
SMG6-209ENST00000571442 DCAF1Q9Y4B6 1507 aa14.06□□□□□ -0.16
SMG6-209ENST00000571442 UNC13AQ9UPW8 1703 aa13.96□□□□□ -0.17
SMG6-209ENST00000571442 SCRIBQ14160 1630 aa13.84□□□□□ -0.19
SMG6-209ENST00000571442 BICRAQ9NZM4 1560 aa13.83□□□□□ -0.19
SMG6-209ENST00000571442 PABPN1Q86U42 306 aaKnown RBP eCLIP13.82□□□□□ -0.2
SMG6-209ENST00000571442 DNAJC5BQ9UF47 199 aa13.67□□□□□ -0.22
SMG6-209ENST00000571442 SHROOM4Q9ULL8 1493 aa13.55□□□□□ -0.24
SMG6-209ENST00000571442 EIF4G1Q04637 1599 aaKnown RBP13.41□□□□□ -0.26
SMG6-209ENST00000571442 CC2D2AQ9P2K1 1620 aa13.36□□□□□ -0.27
SMG6-209ENST00000571442 CECR2Q9BXF3 1484 aa13.33□□□□□ -0.28
SMG6-209ENST00000571442 SMARCA4P51532 1647 aa13.22□□□□□ -0.29
SMG6-209ENST00000571442 MROH2BQ7Z745 1585 aa13.18□□□□□ -0.3
SMG6-209ENST00000571442 BAZ1AQ9NRL2 1556 aaPredicted RBP13.17□□□□□ -0.3
SMG6-209ENST00000571442 ATAD2BQ9ULI0 1458 aa13.13□□□□□ -0.31
SMG6-209ENST00000571442 NCAPD3P42695 1498 aa13.09□□□□□ -0.31
SMG6-209ENST00000571442 PEG3Q9GZU2 1588 aa13.07□□□□□ -0.32
SMG6-209ENST00000571442 SMARCA2P51531 1590 aa13.06□□□□□ -0.32
SMG6-209ENST00000571442 WIZO95785 1651 aa13.05□□□□□ -0.32
SMG6-209ENST00000571442 HMGXB3Q12766 1538 aa13.03□□□□□ -0.32
SMG6-209ENST00000571442 RSF1Q96T23 1441 aaPredicted RBP13.02□□□□□ -0.33
SMG6-209ENST00000571442 BAZ1BQ9UIG0 1483 aaKnown RBP12.99□□□□□ -0.33
SMG6-209ENST00000571442 TOP2AP11388 1531 aaKnown RBP12.86□□□□□ -0.35
SMG6-209ENST00000571442 NESP48681 1621 aa12.83□□□□□ -0.36
SMG6-209ENST00000571442 CCDC88BA6NC98 1476 aa12.73□□□□□ -0.37
SMG6-209ENST00000571442 LAMC3Q9Y6N6 1575 aa12.72□□□□□ -0.37
SMG6-209ENST00000571442 SUPT5HO00267 1087 aaKnown RBP12.71□□□□□ -0.37
SMG6-209ENST00000571442 ERCC6Q03468 1493 aa12.71□□□□□ -0.38
SMG6-209ENST00000571442 CADPSQ9ULU8 1353 aa12.7□□□□□ -0.38
SMG6-209ENST00000571442 KIF21AQ7Z4S6 1674 aa12.67□□□□□ -0.38
SMG6-209ENST00000571442 CUX2O14529 1486 aa12.66□□□□□ -0.38
SMG6-209ENST00000571442 CFTRP13569 1480 aa12.65□□□□□ -0.38
SMG6-209ENST00000571442 THOC2Q8NI27 1593 aaKnown RBP12.6□□□□□ -0.39
SMG6-209ENST00000571442 PDS5BQ9NTI5 1447 aa12.6□□□□□ -0.39
SMG6-209ENST00000571442 DNAJC5Q9H3Z4 198 aa12.59□□□□□ -0.39
SMG6-209ENST00000571442 PRDM2Q13029 1718 aa12.58□□□□□ -0.4
SMG6-209ENST00000571442 FANCD2Q9BXW9 1451 aa12.58□□□□□ -0.4
SMG6-209ENST00000571442 CEP164Q9UPV0 1460 aa12.53□□□□□ -0.4
SMG6-209ENST00000571442 MRC2Q9UBG0 1479 aa12.51□□□□□ -0.41
SMG6-209ENST00000571442 WDR62O43379 1518 aa12.49□□□□□ -0.41
SMG6-209ENST00000571442 URB2Q14146 1524 aaKnown RBP12.48□□□□□ -0.41
SMG6-209ENST00000571442 TOPBP1Q92547 1522 aa12.4□□□□□ -0.42
SMG6-209ENST00000571442 DNMBPQ6XZF7 1577 aa12.36□□□□□ -0.43
SMG6-209ENST00000571442 CUX1P39880 1505 aa12.35□□□□□ -0.43
SMG6-209ENST00000571442 ABCC8Q09428 1581 aa12.31□□□□□ -0.44
SMG6-209ENST00000571442 POLA1P09884 1462 aaPredicted RBP12.3□□□□□ -0.44
SMG6-209ENST00000571442 FGD5Q6ZNL6 1462 aa12.27□□□□□ -0.44
SMG6-209ENST00000571442 RAD54L2Q9Y4B4 1467 aa12.27□□□□□ -0.44
SMG6-209ENST00000571442 ZNF608Q9ULD9 1512 aaPredicted RBP12.27□□□□□ -0.44
SMG6-209ENST00000571442 SYNJ1O43426 1573 aa12.27□□□□□ -0.44
SMG6-209ENST00000571442 TARBP1Q13395 1621 aaKnown RBP12.27□□□□□ -0.44
SMG6-209ENST00000571442 IFT140Q96RY7 1462 aa12.26□□□□□ -0.45
SMG6-209ENST00000571442 WRNQ14191 1432 aaPredicted RBP eCLIP12.24□□□□□ -0.45
SMG6-209ENST00000571442 BIVM-ERCC5R4GMW8 1640 aa12.23□□□□□ -0.45
SMG6-209ENST00000571442 TOP2BQ02880 1626 aa12.22□□□□□ -0.45
SMG6-209ENST00000571442 SOGA1O94964 1423 aa12.21□□□□□ -0.45
SMG6-209ENST00000571442 EIF4G3O43432 1585 aaKnown RBP12.21□□□□□ -0.46
SMG6-209ENST00000571442 WDR97A6NE52 1622 aa12.2□□□□□ -0.46
SMG6-209ENST00000571442 AQRO60306 1485 aaKnown RBP eCLIP12.2□□□□□ -0.461e-6■■■■□ 23.5
SMG6-209ENST00000571442 TDRD9Q8NDG6 1382 aaKnown RBP12.17□□□□□ -0.46
SMG6-209ENST00000571442 ABCA10Q8WWZ4 1543 aa12.14□□□□□ -0.47
SMG6-209ENST00000571442 ABCA5Q8WWZ7 1642 aa12.11□□□□□ -0.47
SMG6-209ENST00000571442 TRIM41Q8WV44 630 aa12.1□□□□□ -0.47
SMG6-209ENST00000571442 PBRM1Q86U86 1689 aa12.09□□□□□ -0.47
SMG6-209ENST00000571442 GAPVD1Q14C86 1478 aa12.08□□□□□ -0.48
SMG6-209ENST00000571442 SNAPC4Q5SXM2 1469 aa12.08□□□□□ -0.48
SMG6-209ENST00000571442 CHD1O14646 1710 aa12.06□□□□□ -0.48
SMG6-209ENST00000571442 GRIN2BQ13224 1484 aa12.05□□□□□ -0.48
SMG6-209ENST00000571442 OSCARQ8IYS5 282 aa12.01□□□□□ -0.49
SMG6-209ENST00000571442 MAGI1Q96QZ7 1491 aaPredicted RBP12.01□□□□□ -0.49
SMG6-209ENST00000571442 RUSC2Q8N2Y8 1516 aa11.99□□□□□ -0.49
SMG6-209ENST00000571442 ADAMTS12P58397 1594 aa11.99□□□□□ -0.49
SMG6-209ENST00000571442 ERICH3Q5RHP9 1530 aa11.97□□□□□ -0.49
SMG6-209ENST00000571442 SYNJ2O15056 1496 aa11.97□□□□□ -0.49
SMG6-209ENST00000571442 FBLN2P98095 1184 aa11.97□□□□□ -0.49
SMG6-209ENST00000571442 KIF27Q86VH2 1401 aa11.94□□□□□ -0.5
SMG6-209ENST00000571442 IGF1RP08069 1367 aa11.94□□□□□ -0.5
SMG6-209ENST00000571442 RIMBP3CA6NJZ7 1639 aa11.94□□□□□ -0.5
SMG6-209ENST00000571442 RIMBP3BA6NNM3 1639 aa11.94□□□□□ -0.5
SMG6-209ENST00000571442 RIMBP3Q9UFD9 1639 aa11.94□□□□□ -0.5
SMG6-209ENST00000571442 CHMP7Q8WUX9 453 aaPredicted RBP11.93□□□□□ -0.5
SMG6-209ENST00000571442 FHAD1B1AJZ9 1412 aa11.93□□□□□ -0.5
SMG6-209ENST00000571442 GRIN2AQ12879 1464 aa11.92□□□□□ -0.5
SMG6-209ENST00000571442 CHIC1Q5VXU3 224 aa11.92□□□□□ -0.5
SMG6-209ENST00000571442 CLASP1Q7Z460 1538 aa11.91□□□□□ -0.5
SMG6-209ENST00000571442 CEP170Q5SW79 1584 aa11.91□□□□□ -0.5
SMG6-209ENST00000571442 ARHGEF11O15085 1522 aa11.89□□□□□ -0.51
SMG6-209ENST00000571442 CUL7Q14999 1698 aa11.87□□□□□ -0.51
SMG6-209ENST00000571442 NUP160Q12769 1436 aa11.87□□□□□ -0.51
SMG6-209ENST00000571442 CARMIL1Q5VZK9 1371 aa11.85□□□□□ -0.51
SMG6-209ENST00000571442 ERCC6L2Q5T890 1561 aa11.82□□□□□ -0.52
SMG6-209ENST00000571442 SHROOM2Q13796 1616 aa11.79□□□□□ -0.52
SMG6-209ENST00000571442 ARAP1Q96P48 1450 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms