RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 AEBP2Q6ZN18 517 aaPredicted RBP17.48■□□□□ 0.39
CTDNEP1-204ENST00000570484 CHIC1Q5VXU3 224 aa17.21■□□□□ 0.35
CTDNEP1-204ENST00000570484 NISCHQ9Y2I1 1504 aa15.33■□□□□ 0.05
CTDNEP1-204ENST00000570484 PHF23Q9BUL5 403 aaPredicted RBP15.17■□□□□ 0.02
CTDNEP1-204ENST00000570484 SENP3Q9H4L4 574 aaPredicted RBP14.77□□□□□ -0.05
CTDNEP1-204ENST00000570484 PLPPR3Q6T4P5 718 aa14□□□□□ -0.17
CTDNEP1-204ENST00000570484 FOXD1Q16676 465 aa13.71□□□□□ -0.21
CTDNEP1-204ENST00000570484 CCDC180Q9P1Z9 1646 aa13.53□□□□□ -0.24
CTDNEP1-204ENST00000570484 PPP6R1Q9UPN7 881 aa13.32□□□□□ -0.28
CTDNEP1-204ENST00000570484 ADRA2BP18089 450 aa13.26□□□□□ -0.29
CTDNEP1-204ENST00000570484 ABCC9O60706 1549 aa12.98□□□□□ -0.33
CTDNEP1-204ENST00000570484 PIAS4Q8N2W9 510 aaPredicted RBP12.88□□□□□ -0.35
CTDNEP1-204ENST00000570484 ZCCHC6Q5VYS8 1495 aaKnown RBP12.86□□□□□ -0.35
CTDNEP1-204ENST00000570484 POTEDQ86YR6 584 aa12.74□□□□□ -0.37
CTDNEP1-204ENST00000570484 DCAF8L2P0C7V8 631 aa12.72□□□□□ -0.37
CTDNEP1-204ENST00000570484 MSH5O43196 834 aa12.71□□□□□ -0.37
CTDNEP1-204ENST00000570484 DCAF1Q9Y4B6 1507 aa12.7□□□□□ -0.38
CTDNEP1-204ENST00000570484 NACADO15069 1562 aa12.65□□□□□ -0.38
CTDNEP1-204ENST00000570484 MYO15BQ96JP2 1530 aa12.65□□□□□ -0.38
CTDNEP1-204ENST00000570484 RB1CC1Q8TDY2 1594 aa12.63□□□□□ -0.39
CTDNEP1-204ENST00000570484 SCRIBQ14160 1630 aa12.4□□□□□ -0.42
CTDNEP1-204ENST00000570484 PPP4R3CPQ6ZMV5 832 aa12.34□□□□□ -0.43
CTDNEP1-204ENST00000570484 SHROOM4Q9ULL8 1493 aa12.34□□□□□ -0.43
CTDNEP1-204ENST00000570484 UNC13AQ9UPW8 1703 aa12.21□□□□□ -0.45
CTDNEP1-204ENST00000570484 KCNA4P22459 653 aa12.21□□□□□ -0.45
CTDNEP1-204ENST00000570484 BICRAQ9NZM4 1560 aa12.14□□□□□ -0.47
CTDNEP1-204ENST00000570484 SCAF1Q9H7N4 1312 aaKnown RBP12.13□□□□□ -0.47
CTDNEP1-204ENST00000570484 PABPN1Q86U42 306 aaKnown RBP eCLIP12.13□□□□□ -0.47
CTDNEP1-204ENST00000570484 NCBP3Q53F19 620 aaKnown RBP12.04□□□□□ -0.48
CTDNEP1-204ENST00000570484 MAPK8IP2Q13387 824 aaPredicted RBP11.99□□□□□ -0.49
CTDNEP1-204ENST00000570484 CNKSR2Q8WXI2 1034 aa11.99□□□□□ -0.49
CTDNEP1-204ENST00000570484 BAZ1AQ9NRL2 1556 aaPredicted RBP11.91□□□□□ -0.5
CTDNEP1-204ENST00000570484 NPM3O75607 178 aaKnown RBP11.9□□□□□ -0.5
CTDNEP1-204ENST00000570484 CECR2Q9BXF3 1484 aa11.89□□□□□ -0.51
CTDNEP1-204ENST00000570484 EIF4G1Q04637 1599 aaKnown RBP11.86□□□□□ -0.51
CTDNEP1-204ENST00000570484 SMARCA4P51532 1647 aa11.86□□□□□ -0.51
CTDNEP1-204ENST00000570484 DMRT2Q9Y5R5 561 aa11.85□□□□□ -0.51
CTDNEP1-204ENST00000570484 MROH2BQ7Z745 1585 aa11.81□□□□□ -0.52
CTDNEP1-204ENST00000570484 RSF1Q96T23 1441 aaPredicted RBP11.77□□□□□ -0.52
CTDNEP1-204ENST00000570484 SMARCA2P51531 1590 aa11.75□□□□□ -0.53
CTDNEP1-204ENST00000570484 RNF216Q9NWF9 866 aaPredicted RBP11.75□□□□□ -0.53
CTDNEP1-204ENST00000570484 DNAJC5BQ9UF47 199 aa11.74□□□□□ -0.53
CTDNEP1-204ENST00000570484 SUPT5HO00267 1087 aaKnown RBP11.73□□□□□ -0.53
CTDNEP1-204ENST00000570484 CC2D2AQ9P2K1 1620 aa11.73□□□□□ -0.53
CTDNEP1-204ENST00000570484 PEG3Q9GZU2 1588 aa11.71□□□□□ -0.53
CTDNEP1-204ENST00000570484 ATAD2BQ9ULI0 1458 aa11.7□□□□□ -0.54
CTDNEP1-204ENST00000570484 HOXD11P31277 338 aaPredicted RBP11.7□□□□□ -0.54
CTDNEP1-204ENST00000570484 WIZO95785 1651 aa11.68□□□□□ -0.54
CTDNEP1-204ENST00000570484 BAZ1BQ9UIG0 1483 aaKnown RBP11.68□□□□□ -0.54
CTDNEP1-204ENST00000570484 HMGXB3Q12766 1538 aa11.66□□□□□ -0.54
CTDNEP1-204ENST00000570484 TOP2AP11388 1531 aaKnown RBP11.65□□□□□ -0.55
CTDNEP1-204ENST00000570484 NCAPD3P42695 1498 aa11.63□□□□□ -0.55
CTDNEP1-204ENST00000570484 SLC4A1APQ9BWU0 796 aaKnown RBP11.62□□□□□ -0.55
CTDNEP1-204ENST00000570484 CCDC88BA6NC98 1476 aa11.45□□□□□ -0.58
CTDNEP1-204ENST00000570484 EHMT2Q96KQ7 1210 aa11.35□□□□□ -0.59
CTDNEP1-204ENST00000570484 LAMC3Q9Y6N6 1575 aa11.33□□□□□ -0.6
CTDNEP1-204ENST00000570484 CADPSQ9ULU8 1353 aa11.33□□□□□ -0.6
CTDNEP1-204ENST00000570484 CFTRP13569 1480 aa11.32□□□□□ -0.6
CTDNEP1-204ENST00000570484 CSRNP3Q8WYN3 585 aa11.32□□□□□ -0.6
CTDNEP1-204ENST00000570484 NESP48681 1621 aa11.27□□□□□ -0.6
CTDNEP1-204ENST00000570484 ZBTB22O15209 634 aa11.27□□□□□ -0.61
CTDNEP1-204ENST00000570484 PDS5BQ9NTI5 1447 aa11.26□□□□□ -0.61
CTDNEP1-204ENST00000570484 PRDM2Q13029 1718 aa11.24□□□□□ -0.61
CTDNEP1-204ENST00000570484 SLC4A2P04920 1241 aa11.24□□□□□ -0.61
CTDNEP1-204ENST00000570484 FANCD2Q9BXW9 1451 aa11.24□□□□□ -0.61
CTDNEP1-204ENST00000570484 ERCC6Q03468 1493 aa11.23□□□□□ -0.61
CTDNEP1-204ENST00000570484 CEP164Q9UPV0 1460 aa11.23□□□□□ -0.61
CTDNEP1-204ENST00000570484 FOXD4L1Q9NU39 408 aa11.2□□□□□ -0.62
CTDNEP1-204ENST00000570484 KIF21AQ7Z4S6 1674 aa11.15□□□□□ -0.62
CTDNEP1-204ENST00000570484 WRNQ14191 1432 aaPredicted RBP eCLIP11.15□□□□□ -0.62
CTDNEP1-204ENST00000570484 ABCC8Q09428 1581 aa11.15□□□□□ -0.62
CTDNEP1-204ENST00000570484 MRC2Q9UBG0 1479 aa11.13□□□□□ -0.63
CTDNEP1-204ENST00000570484 DCAF8L1A6NGE4 600 aa11.12□□□□□ -0.63
CTDNEP1-204ENST00000570484 DNMBPQ6XZF7 1577 aa11.11□□□□□ -0.63
CTDNEP1-204ENST00000570484 SYNJ1O43426 1573 aa11.08□□□□□ -0.64
CTDNEP1-204ENST00000570484 CUX1P39880 1505 aa11.08□□□□□ -0.64
CTDNEP1-204ENST00000570484 THOC2Q8NI27 1593 aaKnown RBP11.07□□□□□ -0.64
CTDNEP1-204ENST00000570484 TOP2BQ02880 1626 aa11.07□□□□□ -0.64
CTDNEP1-204ENST00000570484 TRIM41Q8WV44 630 aa11.07□□□□□ -0.64
CTDNEP1-204ENST00000570484 WDR62O43379 1518 aa11.07□□□□□ -0.64
CTDNEP1-204ENST00000570484 URB2Q14146 1524 aaKnown RBP11.07□□□□□ -0.64
CTDNEP1-204ENST00000570484 TOPBP1Q92547 1522 aa11.07□□□□□ -0.64
CTDNEP1-204ENST00000570484 BIVM-ERCC5R4GMW8 1640 aa11.06□□□□□ -0.64
CTDNEP1-204ENST00000570484 FGD5Q6ZNL6 1462 aa11.03□□□□□ -0.64
CTDNEP1-204ENST00000570484 POLA1P09884 1462 aaPredicted RBP11□□□□□ -0.65
CTDNEP1-204ENST00000570484 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.99□□□□□ -0.65
CTDNEP1-204ENST00000570484 MYCNP04198 464 aaPredicted RBP10.98□□□□□ -0.65
CTDNEP1-204ENST00000570484 CUX2O14529 1486 aa10.97□□□□□ -0.65
CTDNEP1-204ENST00000570484 IFT140Q96RY7 1462 aa10.96□□□□□ -0.65
CTDNEP1-204ENST00000570484 SOGA1O94964 1423 aa10.95□□□□□ -0.66
CTDNEP1-204ENST00000570484 ABCA10Q8WWZ4 1543 aa10.93□□□□□ -0.66
CTDNEP1-204ENST00000570484 RAD54L2Q9Y4B4 1467 aa10.93□□□□□ -0.66
CTDNEP1-204ENST00000570484 U3KPZ7 1027 aaPredicted RBP10.92□□□□□ -0.66
CTDNEP1-204ENST00000570484 KIF27Q86VH2 1401 aa10.91□□□□□ -0.66
CTDNEP1-204ENST00000570484 TARBP1Q13395 1621 aaKnown RBP10.9□□□□□ -0.66
CTDNEP1-204ENST00000570484 EEA1Q15075 1411 aa10.9□□□□□ -0.66
CTDNEP1-204ENST00000570484 WDR97A6NE52 1622 aa10.89□□□□□ -0.67
CTDNEP1-204ENST00000570484 ATXN8OSP0DMR3 200 aa10.87□□□□□ -0.67
CTDNEP1-204ENST00000570484 EIF4G3O43432 1585 aaKnown RBP10.86□□□□□ -0.67
CTDNEP1-204ENST00000570484 ABCA5Q8WWZ7 1642 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms