RNA–Protein interactions for RNA: ENST00000568338.1

KLHDC4-220, Transcript of kelch domain containing 4, humanhuman

TSL 4

Gene KLHDC4, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLHDC4-220ENST00000568338 AEBP2Q6ZN18 517 aaPredicted RBP22.83■■□□□ 1.25
KLHDC4-220ENST00000568338 CHIC1Q5VXU3 224 aa21.96■■□□□ 1.11
KLHDC4-220ENST00000568338 NISCHQ9Y2I1 1504 aa20.41■□□□□ 0.86
KLHDC4-220ENST00000568338 SENP3Q9H4L4 574 aaPredicted RBP19.38■□□□□ 0.69
KLHDC4-220ENST00000568338 PHF23Q9BUL5 403 aaPredicted RBP19.29■□□□□ 0.68
KLHDC4-220ENST00000568338 ABCC9O60706 1549 aa19.06■□□□□ 0.64
KLHDC4-220ENST00000568338 CCDC180Q9P1Z9 1646 aa18.56■□□□□ 0.56
KLHDC4-220ENST00000568338 DNAJC5BQ9UF47 199 aa18.24■□□□□ 0.51
KLHDC4-220ENST00000568338 FOXD1Q16676 465 aa18.04■□□□□ 0.48
KLHDC4-220ENST00000568338 RB1CC1Q8TDY2 1594 aa17.93■□□□□ 0.46
KLHDC4-220ENST00000568338 PLPPR3Q6T4P5 718 aa17.67■□□□□ 0.42
KLHDC4-220ENST00000568338 NACADO15069 1562 aa17.66■□□□□ 0.42
KLHDC4-220ENST00000568338 PABPN1Q86U42 306 aaKnown RBP eCLIP17.64■□□□□ 0.41
KLHDC4-220ENST00000568338 DCAF8L2P0C7V8 631 aa17.49■□□□□ 0.39
KLHDC4-220ENST00000568338 UNC13AQ9UPW8 1703 aa17.41■□□□□ 0.38
KLHDC4-220ENST00000568338 BICRAQ9NZM4 1560 aa17.36■□□□□ 0.37
KLHDC4-220ENST00000568338 MYO15BQ96JP2 1530 aa17.23■□□□□ 0.35
KLHDC4-220ENST00000568338 CECR2Q9BXF3 1484 aa17.23■□□□□ 0.35
KLHDC4-220ENST00000568338 DNAJC5Q9H3Z4 198 aa17.18■□□□□ 0.34
KLHDC4-220ENST00000568338 CC2D2AQ9P2K1 1620 aa17.17■□□□□ 0.34
KLHDC4-220ENST00000568338 SHROOM4Q9ULL8 1493 aa17.15■□□□□ 0.34
KLHDC4-220ENST00000568338 PPP6R1Q9UPN7 881 aa17.12■□□□□ 0.33
KLHDC4-220ENST00000568338 ADRA2BP18089 450 aa17.07■□□□□ 0.32
KLHDC4-220ENST00000568338 EIF4G1Q04637 1599 aaKnown RBP17.02■□□□□ 0.31
KLHDC4-220ENST00000568338 PIAS4Q8N2W9 510 aaPredicted RBP16.92■□□□□ 0.3
KLHDC4-220ENST00000568338 SCRIBQ14160 1630 aa16.88■□□□□ 0.29
KLHDC4-220ENST00000568338 DCAF1Q9Y4B6 1507 aa16.83■□□□□ 0.28
KLHDC4-220ENST00000568338 ZCCHC6Q5VYS8 1495 aaKnown RBP16.81■□□□□ 0.28
KLHDC4-220ENST00000568338 MSH5O43196 834 aa16.74■□□□□ 0.27
KLHDC4-220ENST00000568338 CUX2O14529 1486 aa16.66■□□□□ 0.26
KLHDC4-220ENST00000568338 ERCC6Q03468 1493 aa16.54■□□□□ 0.24
KLHDC4-220ENST00000568338 NCAPD3P42695 1498 aa16.29■□□□□ 0.2
KLHDC4-220ENST00000568338 TRIM41Q8WV44 630 aa16.27■□□□□ 0.2
KLHDC4-220ENST00000568338 NESP48681 1621 aa16.19■□□□□ 0.18
KLHDC4-220ENST00000568338 ATAD2BQ9ULI0 1458 aa16.17■□□□□ 0.18
KLHDC4-220ENST00000568338 HMGXB3Q12766 1538 aa16.15■□□□□ 0.18
KLHDC4-220ENST00000568338 THOC2Q8NI27 1593 aaKnown RBP16.15■□□□□ 0.18
KLHDC4-220ENST00000568338 SMARCA2P51531 1590 aa16.13■□□□□ 0.17
KLHDC4-220ENST00000568338 SMARCA4P51532 1647 aa16.04■□□□□ 0.16
KLHDC4-220ENST00000568338 LAMC3Q9Y6N6 1575 aa16.04■□□□□ 0.16
KLHDC4-220ENST00000568338 BAZ1BQ9UIG0 1483 aaKnown RBP16.03■□□□□ 0.16
KLHDC4-220ENST00000568338 PDS5BQ9NTI5 1447 aa15.98■□□□□ 0.15
KLHDC4-220ENST00000568338 KIF21AQ7Z4S6 1674 aa15.96■□□□□ 0.15
KLHDC4-220ENST00000568338 BAZ1AQ9NRL2 1556 aaPredicted RBP15.91■□□□□ 0.14
KLHDC4-220ENST00000568338 MRC2Q9UBG0 1479 aa15.87■□□□□ 0.13
KLHDC4-220ENST00000568338 PEG3Q9GZU2 1588 aa15.87■□□□□ 0.13
KLHDC4-220ENST00000568338 WDR62O43379 1518 aa15.83■□□□□ 0.12
KLHDC4-220ENST00000568338 POTEDQ86YR6 584 aa15.82■□□□□ 0.12
KLHDC4-220ENST00000568338 OSCARQ8IYS5 282 aa15.79■□□□□ 0.12
KLHDC4-220ENST00000568338 CADPSQ9ULU8 1353 aa15.78■□□□□ 0.12
KLHDC4-220ENST00000568338 CEP164Q9UPV0 1460 aa15.71■□□□□ 0.11
KLHDC4-220ENST00000568338 MROH2BQ7Z745 1585 aa15.71■□□□□ 0.11
KLHDC4-220ENST00000568338 RIMBP3CA6NJZ7 1639 aa15.63■□□□□ 0.09
KLHDC4-220ENST00000568338 RIMBP3BA6NNM3 1639 aa15.63■□□□□ 0.09
KLHDC4-220ENST00000568338 RIMBP3Q9UFD9 1639 aa15.63■□□□□ 0.09
KLHDC4-220ENST00000568338 FANCD2Q9BXW9 1451 aa15.63■□□□□ 0.09
KLHDC4-220ENST00000568338 MAPK8IP2Q13387 824 aaPredicted RBP15.58■□□□□ 0.08
KLHDC4-220ENST00000568338 SCAF1Q9H7N4 1312 aaKnown RBP15.57■□□□□ 0.08
KLHDC4-220ENST00000568338 ARHGEF11O15085 1522 aa15.54■□□□□ 0.08
KLHDC4-220ENST00000568338 PPP4R3CPQ6ZMV5 832 aa15.53■□□□□ 0.08
KLHDC4-220ENST00000568338 URB2Q14146 1524 aaKnown RBP15.51■□□□□ 0.07
KLHDC4-220ENST00000568338 TRHP20396 242 aaPredicted RBP15.5■□□□□ 0.07
KLHDC4-220ENST00000568338 CFTRP13569 1480 aa15.5■□□□□ 0.07
KLHDC4-220ENST00000568338 WIZO95785 1651 aa15.49■□□□□ 0.07
KLHDC4-220ENST00000568338 CYB5RLQ6IPT4 315 aa15.45■□□□□ 0.06
KLHDC4-220ENST00000568338 DMRT2Q9Y5R5 561 aa15.43■□□□□ 0.06
KLHDC4-220ENST00000568338 IFT140Q96RY7 1462 aa15.4■□□□□ 0.06
KLHDC4-220ENST00000568338 ZNF608Q9ULD9 1512 aaPredicted RBP15.4■□□□□ 0.06
KLHDC4-220ENST00000568338 ARAP1Q96P48 1450 aa15.34■□□□□ 0.05
KLHDC4-220ENST00000568338 EIF4G3O43432 1585 aaKnown RBP15.32■□□□□ 0.04
KLHDC4-220ENST00000568338 TOP2AP11388 1531 aaKnown RBP15.29■□□□□ 0.04
KLHDC4-220ENST00000568338 RSF1Q96T23 1441 aaPredicted RBP15.29■□□□□ 0.04
KLHDC4-220ENST00000568338 PRDM2Q13029 1718 aa15.27■□□□□ 0.04
KLHDC4-220ENST00000568338 TOPBP1Q92547 1522 aa15.26■□□□□ 0.03
KLHDC4-220ENST00000568338 CHD1O14646 1710 aa15.26■□□□□ 0.03
KLHDC4-220ENST00000568338 FBLN2P98095 1184 aa15.25■□□□□ 0.03
KLHDC4-220ENST00000568338 SUPT5HO00267 1087 aaKnown RBP15.23■□□□□ 0.03
KLHDC4-220ENST00000568338 ABCC8Q09428 1581 aa15.22■□□□□ 0.03
KLHDC4-220ENST00000568338 AQRO60306 1485 aaKnown RBP eCLIP15.2■□□□□ 0.022e-8■■■□□ 18.4
KLHDC4-220ENST00000568338 DNMBPQ6XZF7 1577 aa15.17■□□□□ 0.02
KLHDC4-220ENST00000568338 CNKSR2Q8WXI2 1034 aa15.17■□□□□ 0.02
KLHDC4-220ENST00000568338 TARBP1Q13395 1621 aaKnown RBP15.14■□□□□ 0.01
KLHDC4-220ENST00000568338 CCDC88BA6NC98 1476 aa15.1■□□□□ 0.01
KLHDC4-220ENST00000568338 CLASP1Q7Z460 1538 aa15.09■□□□□ 0.01
KLHDC4-220ENST00000568338 SYNJ1O43426 1573 aa15.07■□□□□ 0
KLHDC4-220ENST00000568338 POLA1P09884 1462 aaPredicted RBP15.07■□□□□ 0
KLHDC4-220ENST00000568338 SNAPC4Q5SXM2 1469 aa15.06■□□□□ 0
KLHDC4-220ENST00000568338 CHMP7Q8WUX9 453 aaPredicted RBP15.04■□□□□ -0
KLHDC4-220ENST00000568338 TDRD9Q8NDG6 1382 aaKnown RBP15.03■□□□□ -0
KLHDC4-220ENST00000568338 RAD54L2Q9Y4B4 1467 aa15.01□□□□□ -0.01
KLHDC4-220ENST00000568338 SOGA1O94964 1423 aa15□□□□□ -0.01
KLHDC4-220ENST00000568338 NCBP3Q53F19 620 aaKnown RBP15□□□□□ -0.01
KLHDC4-220ENST00000568338 MAGI1Q96QZ7 1491 aaPredicted RBP15□□□□□ -0.01
KLHDC4-220ENST00000568338 WDR97A6NE52 1622 aa14.99□□□□□ -0.01
KLHDC4-220ENST00000568338 HOXD11P31277 338 aaPredicted RBP14.99□□□□□ -0.01
KLHDC4-220ENST00000568338 GAPVD1Q14C86 1478 aa14.99□□□□□ -0.01
KLHDC4-220ENST00000568338 RNF216Q9NWF9 866 aaPredicted RBP14.96□□□□□ -0.01
KLHDC4-220ENST00000568338 SYNJ2O15056 1496 aa14.95□□□□□ -0.02
KLHDC4-220ENST00000568338 GRIN2BQ13224 1484 aa14.95□□□□□ -0.02
KLHDC4-220ENST00000568338 FGD5Q6ZNL6 1462 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms