RNA–Protein interactions for RNA: ENST00000563952.1
Retrieved 7 of 7 RNA–protein pairs in 13.2 ms
CMTM4-204, Transcript of CKLF like MARVEL transmembrane domain containing 4, human
TSL 1 (best) BASIC
Gene CMTM4, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .
RNA | Protein | Prediction (catRAPID) | Interaction (ENCODE eCLIP) | ||||||
---|---|---|---|---|---|---|---|---|---|
Transcript Symbol | Ensembl Transcript ID | Gene | UniProt Accession | Length | Protein Status | Prediction Score | Prediction z-Score | p-Value | Fold Change |
CMTM4-204 | ENST00000563952 | PCBP2 | Q15366 | 365 aa | Known RBP eCLIP | 28.87 | ■■■□□ 2.21 | 3e-12 | ■■■■■ 52.8 |
CMTM4-204 | ENST00000563952 | DDX3X | O00571 | 662 aa | Known RBP eCLIP | 31.53 | ■■■□□ 2.64 | 7e-22 | ■■■■■ 46.8 |
CMTM4-204 | ENST00000563952 | TARDBP | Q13148 | 414 aa | Known RBP eCLIP | 30.66 | ■■■□□ 2.5 | 9e-8 | ■■■■■ 28.7 |
CMTM4-204 | ENST00000563952 | PRPF8 | Q6P2Q9 | 2335 aa | Known RBP eCLIP | 26.08 | ■■□□□ 1.76 | 4e-7 | ■■■■□ 26.6 |
CMTM4-204 | ENST00000563952 | PTBP1 | P26599 | 531 aa | Known RBP eCLIP | 23.42 | ■■□□□ 1.34 | 2e-7 | ■■■■□ 20.8 |
CMTM4-204 | ENST00000563952 | ILF3 | Q12906 | 894 aa | Known RBP eCLIP | 30.57 | ■■■□□ 2.48 | 4e-7 | ■□□□□ 9.9 |
CMTM4-204 | ENST00000563952 | HNRNPL | P14866 | 589 aa | Known RBP eCLIP | 32.02 | ■■■□□ 2.72 | 2e-9 | ■□□□□ 9.9 |