RNA–Protein interactions for RNA: ENST00000563364.2

NIP7-205, Transcript of NIP7, nucleolar pre-rRNA processing protein, humanhuman

TSL 2

Gene NIP7, Length 436 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7-205ENST00000563364 NISCHQ9Y2I1 1504 aa51.72■■■■■ 5.87
NIP7-205ENST00000563364 CCDC180Q9P1Z9 1646 aa46.44■■■■■ 5.03
NIP7-205ENST00000563364 ABCC9O60706 1549 aa46.33■■■■■ 5.01
NIP7-205ENST00000563364 RB1CC1Q8TDY2 1594 aa44.18■■■■■ 4.66
NIP7-205ENST00000563364 NACADO15069 1562 aa43.91■■■■■ 4.62
NIP7-205ENST00000563364 DCAF8L2P0C7V8 631 aa43.53■■■■■ 4.56
NIP7-205ENST00000563364 DNAJC5BQ9UF47 199 aa43.45■■■■■ 4.55
NIP7-205ENST00000563364 MYO15BQ96JP2 1530 aa43.36■■■■■ 4.53
NIP7-205ENST00000563364 UNC13AQ9UPW8 1703 aa43.16■■■■■ 4.5
NIP7-205ENST00000563364 PABPN1Q86U42 306 aaKnown RBP eCLIP43.11■■■■■ 4.49
NIP7-205ENST00000563364 BICRAQ9NZM4 1560 aa42.88■■■■■ 4.45
NIP7-205ENST00000563364 ZCCHC6Q5VYS8 1495 aaKnown RBP42.87■■■■■ 4.45
NIP7-205ENST00000563364 DCAF1Q9Y4B6 1507 aa42.79■■■■■ 4.44
NIP7-205ENST00000563364 SHROOM4Q9ULL8 1493 aa42.4■■■■■ 4.38
NIP7-205ENST00000563364 SCRIBQ14160 1630 aa42.22■■■■■ 4.35
NIP7-205ENST00000563364 CC2D2AQ9P2K1 1620 aa41.89■■■■■ 4.3
NIP7-205ENST00000563364 EIF4G1Q04637 1599 aaKnown RBP41.82■■■■■ 4.29
NIP7-205ENST00000563364 CECR2Q9BXF3 1484 aa41.77■■■■■ 4.28
NIP7-205ENST00000563364 NCAPD3P42695 1498 aa40.53■■■■■ 4.08
NIP7-205ENST00000563364 ATAD2BQ9ULI0 1458 aa40.38■■■■■ 4.05
NIP7-205ENST00000563364 SMARCA4P51532 1647 aa40.33■■■■■ 4.05
NIP7-205ENST00000563364 SMARCA2P51531 1590 aa40.28■■■■■ 4.04
NIP7-205ENST00000563364 HMGXB3Q12766 1538 aa40.22■■■■■ 4.03
NIP7-205ENST00000563364 BAZ1AQ9NRL2 1556 aaPredicted RBP40.16■■■■■ 4.02
NIP7-205ENST00000563364 ERCC6Q03468 1493 aa40.02■■■■■ 4
NIP7-205ENST00000563364 CUX2O14529 1486 aa40.01■■■■■ 4
NIP7-205ENST00000563364 PEG3Q9GZU2 1588 aa40■■■■□ 3.99
NIP7-205ENST00000563364 BAZ1BQ9UIG0 1483 aaKnown RBP39.97■■■■□ 3.99
NIP7-205ENST00000563364 DNAJC5Q9H3Z4 198 aa39.96■■■■□ 3.99
NIP7-205ENST00000563364 MROH2BQ7Z745 1585 aa39.81■■■■□ 3.96
NIP7-205ENST00000563364 NESP48681 1621 aa39.8■■■■□ 3.96
NIP7-205ENST00000563364 LAMC3Q9Y6N6 1575 aa39.61■■■■□ 3.93
NIP7-205ENST00000563364 THOC2Q8NI27 1593 aaKnown RBP39.45■■■■□ 3.91
NIP7-205ENST00000563364 PDS5BQ9NTI5 1447 aa39.38■■■■□ 3.89
NIP7-205ENST00000563364 WIZO95785 1651 aa39.33■■■■□ 3.89
NIP7-205ENST00000563364 KIF21AQ7Z4S6 1674 aa39.31■■■■□ 3.88
NIP7-205ENST00000563364 CADPSQ9ULU8 1353 aa39.28■■■■□ 3.88
NIP7-205ENST00000563364 MRC2Q9UBG0 1479 aa39.01■■■■□ 3.84
NIP7-205ENST00000563364 RSF1Q96T23 1441 aaPredicted RBP39.01■■■■□ 3.84
NIP7-205ENST00000563364 WDR62O43379 1518 aa38.93■■■■□ 3.82
NIP7-205ENST00000563364 TOP2AP11388 1531 aaKnown RBP38.87■■■■□ 3.81
NIP7-205ENST00000563364 CFTRP13569 1480 aa38.85■■■■□ 3.81
NIP7-205ENST00000563364 CEP164Q9UPV0 1460 aa38.85■■■■□ 3.81
NIP7-205ENST00000563364 FANCD2Q9BXW9 1451 aa38.8■■■■□ 3.8
NIP7-205ENST00000563364 URB2Q14146 1524 aaKnown RBP38.48■■■■□ 3.75
NIP7-205ENST00000563364 PRDM2Q13029 1718 aa38.46■■■■□ 3.75
NIP7-205ENST00000563364 CCDC88BA6NC98 1476 aa38.41■■■■□ 3.74
NIP7-205ENST00000563364 OSCARQ8IYS5 282 aa38.16■■■■□ 3.7
NIP7-205ENST00000563364 IFT140Q96RY7 1462 aa38.1■■■■□ 3.69
NIP7-205ENST00000563364 TRIM41Q8WV44 630 aa38.1■■■■□ 3.69
NIP7-205ENST00000563364 TOPBP1Q92547 1522 aa38.08■■■■□ 3.69
NIP7-205ENST00000563364 ABCC8Q09428 1581 aa38.06■■■■□ 3.68
NIP7-205ENST00000563364 ZNF608Q9ULD9 1512 aaPredicted RBP37.98■■■■□ 3.67
NIP7-205ENST00000563364 DNMBPQ6XZF7 1577 aa37.95■■■■□ 3.67
NIP7-205ENST00000563364 EIF4G3O43432 1585 aaKnown RBP37.79■■■■□ 3.64
NIP7-205ENST00000563364 TARBP1Q13395 1621 aaKnown RBP37.76■■■■□ 3.63
NIP7-205ENST00000563364 POLA1P09884 1462 aaPredicted RBP37.69■■■■□ 3.62
NIP7-205ENST00000563364 AQRO60306 1485 aaKnown RBP eCLIP37.64■■■■□ 3.621e-8■■■□□ 17.1
NIP7-205ENST00000563364 RIMBP3CA6NJZ7 1639 aa37.64■■■■□ 3.62
NIP7-205ENST00000563364 RIMBP3BA6NNM3 1639 aa37.64■■■■□ 3.62
NIP7-205ENST00000563364 RIMBP3Q9UFD9 1639 aa37.64■■■■□ 3.62
NIP7-205ENST00000563364 ARHGEF11O15085 1522 aa37.53■■■■□ 3.6
NIP7-205ENST00000563364 SOGA1O94964 1423 aa37.52■■■■□ 3.6
NIP7-205ENST00000563364 RAD54L2Q9Y4B4 1467 aa37.52■■■■□ 3.6
NIP7-205ENST00000563364 CHD1O14646 1710 aa37.5■■■■□ 3.59
NIP7-205ENST00000563364 WDR97A6NE52 1622 aa37.44■■■■□ 3.58
NIP7-205ENST00000563364 FGD5Q6ZNL6 1462 aa37.44■■■■□ 3.58
NIP7-205ENST00000563364 CUX1P39880 1505 aa37.41■■■■□ 3.58
NIP7-205ENST00000563364 TDRD9Q8NDG6 1382 aaKnown RBP37.41■■■■□ 3.58
NIP7-205ENST00000563364 FBLN2P98095 1184 aa37.36■■■■□ 3.57
NIP7-205ENST00000563364 SNAPC4Q5SXM2 1469 aa37.26■■■■□ 3.56
NIP7-205ENST00000563364 MAGI1Q96QZ7 1491 aaPredicted RBP37.22■■■■□ 3.55
NIP7-205ENST00000563364 CYB5RLQ6IPT4 315 aa37.22■■■■□ 3.55
NIP7-205ENST00000563364 GRIN2BQ13224 1484 aa37.2■■■■□ 3.55
NIP7-205ENST00000563364 SUPT5HO00267 1087 aaKnown RBP37.2■■■■□ 3.55
NIP7-205ENST00000563364 ARAP1Q96P48 1450 aa37.16■■■■□ 3.54
NIP7-205ENST00000563364 CHMP7Q8WUX9 453 aaPredicted RBP37.14■■■■□ 3.54
NIP7-205ENST00000563364 CLASP1Q7Z460 1538 aa37.11■■■■□ 3.53
NIP7-205ENST00000563364 SYNJ1O43426 1573 aa37.09■■■■□ 3.53
NIP7-205ENST00000563364 SYNJ2O15056 1496 aa37.08■■■■□ 3.53
NIP7-205ENST00000563364 GAPVD1Q14C86 1478 aa37.07■■■■□ 3.52
NIP7-205ENST00000563364 ABCA10Q8WWZ4 1543 aa37.05■■■■□ 3.52
NIP7-205ENST00000563364 PBRM1Q86U86 1689 aa37.04■■■■□ 3.52
NIP7-205ENST00000563364 ABCA5Q8WWZ7 1642 aa36.99■■■■□ 3.51
NIP7-205ENST00000563364 WRNQ14191 1432 aaPredicted RBP eCLIP36.9■■■■□ 3.5
NIP7-205ENST00000563364 BIVM-ERCC5R4GMW8 1640 aa36.85■■■■□ 3.49
NIP7-205ENST00000563364 TOP2BQ02880 1626 aa36.85■■■■□ 3.49
NIP7-205ENST00000563364 TRHP20396 242 aaPredicted RBP36.78■■■■□ 3.48
NIP7-205ENST00000563364 GRIN2AQ12879 1464 aa36.72■■■■□ 3.47
NIP7-205ENST00000563364 ADAMTS12P58397 1594 aa36.7■■■■□ 3.46
NIP7-205ENST00000563364 NUP160Q12769 1436 aa36.62■■■■□ 3.45
NIP7-205ENST00000563364 FHAD1B1AJZ9 1412 aa36.61■■■■□ 3.45
NIP7-205ENST00000563364 ERICH3Q5RHP9 1530 aa36.6■■■■□ 3.45
NIP7-205ENST00000563364 CEP170Q5SW79 1584 aa36.57■■■■□ 3.44
NIP7-205ENST00000563364 ERCC6L2Q5T890 1561 aa36.48■■■■□ 3.43
NIP7-205ENST00000563364 SHROOM2Q13796 1616 aa36.46■■■■□ 3.43
NIP7-205ENST00000563364 PRG4Q92954 1404 aaPredicted RBP36.23■■■■□ 3.39
NIP7-205ENST00000563364 JPH4Q96JJ6 628 aa36.22■■■■□ 3.39
NIP7-205ENST00000563364 RUSC2Q8N2Y8 1516 aa36.18■■■■□ 3.38
NIP7-205ENST00000563364 KIF27Q86VH2 1401 aa36.12■■■■□ 3.37
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms