RNA–Protein interactions for RNA: ENST00000560615.5

TPM1-224, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 570 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-224ENST00000560615 NISCHQ9Y2I1 1504 aa45.98■■■■■ 4.95
TPM1-224ENST00000560615 CCDC180Q9P1Z9 1646 aa41.18■■■■■ 4.18
TPM1-224ENST00000560615 ABCC9O60706 1549 aa41.16■■■■■ 4.18
TPM1-224ENST00000560615 RB1CC1Q8TDY2 1594 aa39.26■■■■□ 3.88
TPM1-224ENST00000560615 NACADO15069 1562 aa39.01■■■■□ 3.84
TPM1-224ENST00000560615 DCAF8L2P0C7V8 631 aa38.95■■■■□ 3.83
TPM1-224ENST00000560615 MYO15BQ96JP2 1530 aa38.52■■■■□ 3.76
TPM1-224ENST00000560615 DNAJC5BQ9UF47 199 aa38.49■■■■□ 3.75
TPM1-224ENST00000560615 PABPN1Q86U42 306 aaKnown RBP eCLIP38.37■■■■□ 3.73
TPM1-224ENST00000560615 UNC13AQ9UPW8 1703 aa38.09■■■■□ 3.69
TPM1-224ENST00000560615 ZCCHC6Q5VYS8 1495 aaKnown RBP38.09■■■■□ 3.69
TPM1-224ENST00000560615 DCAF1Q9Y4B6 1507 aa38.02■■■■□ 3.68
TPM1-224ENST00000560615 BICRAQ9NZM4 1560 aa37.94■■■■□ 3.66
TPM1-224ENST00000560615 SHROOM4Q9ULL8 1493 aa37.68■■■■□ 3.62
TPM1-224ENST00000560615 SCRIBQ14160 1630 aa37.5■■■■□ 3.59
TPM1-224ENST00000560615 CC2D2AQ9P2K1 1620 aa37.14■■■■□ 3.54
TPM1-224ENST00000560615 CECR2Q9BXF3 1484 aa37.12■■■■□ 3.53
TPM1-224ENST00000560615 EIF4G1Q04637 1599 aaKnown RBP37.1■■■■□ 3.53
TPM1-224ENST00000560615 NCAPD3P42695 1498 aa36.02■■■■□ 3.36
TPM1-224ENST00000560615 ATAD2BQ9ULI0 1458 aa35.88■■■■□ 3.33
TPM1-224ENST00000560615 SMARCA2P51531 1590 aa35.84■■■■□ 3.33
TPM1-224ENST00000560615 SMARCA4P51532 1647 aa35.8■■■■□ 3.32
TPM1-224ENST00000560615 BAZ1AQ9NRL2 1556 aaPredicted RBP35.73■■■■□ 3.31
TPM1-224ENST00000560615 HMGXB3Q12766 1538 aa35.73■■■■□ 3.31
TPM1-224ENST00000560615 ERCC6Q03468 1493 aa35.65■■■■□ 3.3
TPM1-224ENST00000560615 BAZ1BQ9UIG0 1483 aaKnown RBP35.59■■■■□ 3.29
TPM1-224ENST00000560615 CUX2O14529 1486 aa35.54■■■■□ 3.28
TPM1-224ENST00000560615 PEG3Q9GZU2 1588 aa35.48■■■■□ 3.27
TPM1-224ENST00000560615 DNAJC5Q9H3Z4 198 aa35.45■■■■□ 3.27
TPM1-224ENST00000560615 MROH2BQ7Z745 1585 aa35.37■■■■□ 3.25
TPM1-224ENST00000560615 NESP48681 1621 aa35.31■■■■□ 3.24
TPM1-224ENST00000560615 LAMC3Q9Y6N6 1575 aa35.18■■■■□ 3.22
TPM1-224ENST00000560615 PDS5BQ9NTI5 1447 aa35.08■■■■□ 3.21
TPM1-224ENST00000560615 CADPSQ9ULU8 1353 aa34.97■■■■□ 3.19
TPM1-224ENST00000560615 THOC2Q8NI27 1593 aaKnown RBP34.91■■■■□ 3.18
TPM1-224ENST00000560615 WIZO95785 1651 aa34.9■■■■□ 3.18
TPM1-224ENST00000560615 KIF21AQ7Z4S6 1674 aa34.79■■■■□ 3.16
TPM1-224ENST00000560615 RSF1Q96T23 1441 aaPredicted RBP34.72■■■■□ 3.15
TPM1-224ENST00000560615 MRC2Q9UBG0 1479 aa34.68■■■■□ 3.14
TPM1-224ENST00000560615 CEP164Q9UPV0 1460 aa34.58■■■■□ 3.13
TPM1-224ENST00000560615 TOP2AP11388 1531 aaKnown RBP34.56■■■■□ 3.12
TPM1-224ENST00000560615 WDR62O43379 1518 aa34.54■■■■□ 3.12
TPM1-224ENST00000560615 CFTRP13569 1480 aa34.53■■■■□ 3.12
TPM1-224ENST00000560615 FANCD2Q9BXW9 1451 aa34.52■■■■□ 3.12
TPM1-224ENST00000560615 CCDC88BA6NC98 1476 aa34.17■■■■□ 3.06
TPM1-224ENST00000560615 URB2Q14146 1524 aaKnown RBP34.15■■■■□ 3.06
TPM1-224ENST00000560615 PRDM2Q13029 1718 aa34.03■■■■□ 3.04
TPM1-224ENST00000560615 OSCARQ8IYS5 282 aa34.02■■■■□ 3.04
TPM1-224ENST00000560615 TRIM41Q8WV44 630 aa33.94■■■■□ 3.02
TPM1-224ENST00000560615 ABCC8Q09428 1581 aa33.92■■■■□ 3.02
TPM1-224ENST00000560615 IFT140Q96RY7 1462 aa33.91■■■■□ 3.02
TPM1-224ENST00000560615 TOPBP1Q92547 1522 aa33.84■■■■□ 3.01
TPM1-224ENST00000560615 DNMBPQ6XZF7 1577 aa33.72■■■□□ 2.99
TPM1-224ENST00000560615 ZNF608Q9ULD9 1512 aaPredicted RBP33.72■■■□□ 2.99
TPM1-224ENST00000560615 EIF4G3O43432 1585 aaKnown RBP33.52■■■□□ 2.96
TPM1-224ENST00000560615 POLA1P09884 1462 aaPredicted RBP33.5■■■□□ 2.95
TPM1-224ENST00000560615 AQRO60306 1485 aaKnown RBP eCLIP33.48■■■□□ 2.951e-12■■■■□ 23
TPM1-224ENST00000560615 TARBP1Q13395 1621 aaKnown RBP33.46■■■□□ 2.95
TPM1-224ENST00000560615 SOGA1O94964 1423 aa33.44■■■□□ 2.94
TPM1-224ENST00000560615 FBLN2P98095 1184 aa33.39■■■□□ 2.94
TPM1-224ENST00000560615 RAD54L2Q9Y4B4 1467 aa33.35■■■□□ 2.93
TPM1-224ENST00000560615 RIMBP3CA6NJZ7 1639 aa33.35■■■□□ 2.93
TPM1-224ENST00000560615 RIMBP3BA6NNM3 1639 aa33.35■■■□□ 2.93
TPM1-224ENST00000560615 RIMBP3Q9UFD9 1639 aa33.35■■■□□ 2.93
TPM1-224ENST00000560615 SUPT5HO00267 1087 aaKnown RBP33.34■■■□□ 2.93
TPM1-224ENST00000560615 TDRD9Q8NDG6 1382 aaKnown RBP33.32■■■□□ 2.92
TPM1-224ENST00000560615 FGD5Q6ZNL6 1462 aa33.31■■■□□ 2.92
TPM1-224ENST00000560615 ARHGEF11O15085 1522 aa33.3■■■□□ 2.92
TPM1-224ENST00000560615 WDR97A6NE52 1622 aa33.26■■■□□ 2.91
TPM1-224ENST00000560615 CUX1P39880 1505 aa33.23■■■□□ 2.91
TPM1-224ENST00000560615 CHD1O14646 1710 aa33.19■■■□□ 2.9
TPM1-224ENST00000560615 CHMP7Q8WUX9 453 aaPredicted RBP33.18■■■□□ 2.9
TPM1-224ENST00000560615 CYB5RLQ6IPT4 315 aa33.16■■■□□ 2.9
TPM1-224ENST00000560615 SNAPC4Q5SXM2 1469 aa33.14■■■□□ 2.9
TPM1-224ENST00000560615 GRIN2BQ13224 1484 aa33.12■■■□□ 2.89
TPM1-224ENST00000560615 MAGI1Q96QZ7 1491 aaPredicted RBP33.12■■■□□ 2.89
TPM1-224ENST00000560615 GAPVD1Q14C86 1478 aa33■■■□□ 2.87
TPM1-224ENST00000560615 SYNJ2O15056 1496 aa32.99■■■□□ 2.87
TPM1-224ENST00000560615 SYNJ1O43426 1573 aa32.99■■■□□ 2.87
TPM1-224ENST00000560615 ABCA10Q8WWZ4 1543 aa32.96■■■□□ 2.87
TPM1-224ENST00000560615 ARAP1Q96P48 1450 aa32.95■■■□□ 2.87
TPM1-224ENST00000560615 WRNQ14191 1432 aaPredicted RBP eCLIP32.92■■■□□ 2.86
TPM1-224ENST00000560615 CLASP1Q7Z460 1538 aa32.89■■■□□ 2.86
TPM1-224ENST00000560615 TRHP20396 242 aaPredicted RBP32.85■■■□□ 2.85
TPM1-224ENST00000560615 PBRM1Q86U86 1689 aa32.82■■■□□ 2.84
TPM1-224ENST00000560615 ABCA5Q8WWZ7 1642 aa32.8■■■□□ 2.84
TPM1-224ENST00000560615 TOP2BQ02880 1626 aa32.74■■■□□ 2.83
TPM1-224ENST00000560615 BIVM-ERCC5R4GMW8 1640 aa32.7■■■□□ 2.83
TPM1-224ENST00000560615 GRIN2AQ12879 1464 aa32.66■■■□□ 2.82
TPM1-224ENST00000560615 FHAD1B1AJZ9 1412 aa32.62■■■□□ 2.81
TPM1-224ENST00000560615 ADAMTS12P58397 1594 aa32.58■■■□□ 2.81
TPM1-224ENST00000560615 ERICH3Q5RHP9 1530 aa32.56■■■□□ 2.8
TPM1-224ENST00000560615 NUP160Q12769 1436 aa32.53■■■□□ 2.8
TPM1-224ENST00000560615 CEP170Q5SW79 1584 aa32.45■■■□□ 2.78
TPM1-224ENST00000560615 JPH4Q96JJ6 628 aa32.31■■■□□ 2.76
TPM1-224ENST00000560615 ERCC6L2Q5T890 1561 aa32.31■■■□□ 2.76
TPM1-224ENST00000560615 SHROOM2Q13796 1616 aa32.3■■■□□ 2.76
TPM1-224ENST00000560615 PRG4Q92954 1404 aaPredicted RBP32.26■■■□□ 2.76
TPM1-224ENST00000560615 KIF27Q86VH2 1401 aa32.25■■■□□ 2.75
TPM1-224ENST00000560615 IGF1RP08069 1367 aa32.17■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms