RNA–Protein interactions for RNA: ENST00000559931.5

SMAD6-204, Transcript of SMAD family member 6, humanhuman

TSL 3

Gene SMAD6, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD6-204ENST00000559931 NISCHQ9Y2I1 1504 aa33.73■■■□□ 2.99
SMAD6-204ENST00000559931 CCDC180Q9P1Z9 1646 aa29.76■■■□□ 2.35
SMAD6-204ENST00000559931 ABCC9O60706 1549 aa29.06■■■□□ 2.24
SMAD6-204ENST00000559931 DCAF8L2P0C7V8 631 aa28.27■■■□□ 2.12
SMAD6-204ENST00000559931 ZCCHC6Q5VYS8 1495 aaKnown RBP28.15■■■□□ 2.1
SMAD6-204ENST00000559931 RB1CC1Q8TDY2 1594 aa27.96■■■□□ 2.07
SMAD6-204ENST00000559931 NACADO15069 1562 aa27.94■■■□□ 2.06
SMAD6-204ENST00000559931 DCAF1Q9Y4B6 1507 aa27.86■■■□□ 2.05
SMAD6-204ENST00000559931 MYO15BQ96JP2 1530 aa27.79■■■□□ 2.04
SMAD6-204ENST00000559931 UNC13AQ9UPW8 1703 aa27.41■■□□□ 1.98
SMAD6-204ENST00000559931 SCRIBQ14160 1630 aa27.27■■□□□ 1.96
SMAD6-204ENST00000559931 PABPN1Q86U42 306 aaKnown RBP eCLIP27.22■■□□□ 1.95
SMAD6-204ENST00000559931 BICRAQ9NZM4 1560 aa27.12■■□□□ 1.93
SMAD6-204ENST00000559931 SHROOM4Q9ULL8 1493 aa27.08■■□□□ 1.93
SMAD6-204ENST00000559931 DNAJC5BQ9UF47 199 aa26.55■■□□□ 1.84
SMAD6-204ENST00000559931 EIF4G1Q04637 1599 aaKnown RBP26.39■■□□□ 1.82
SMAD6-204ENST00000559931 CC2D2AQ9P2K1 1620 aa26.28■■□□□ 1.8
SMAD6-204ENST00000559931 CECR2Q9BXF3 1484 aa26.25■■□□□ 1.79
SMAD6-204ENST00000559931 BAZ1AQ9NRL2 1556 aaPredicted RBP26.12■■□□□ 1.77
SMAD6-204ENST00000559931 SMARCA4P51532 1647 aa26.07■■□□□ 1.76
SMAD6-204ENST00000559931 MROH2BQ7Z745 1585 aa26.02■■□□□ 1.76
SMAD6-204ENST00000559931 RSF1Q96T23 1441 aaPredicted RBP25.88■■□□□ 1.73
SMAD6-204ENST00000559931 ATAD2BQ9ULI0 1458 aa25.84■■□□□ 1.73
SMAD6-204ENST00000559931 SMARCA2P51531 1590 aa25.82■■□□□ 1.72
SMAD6-204ENST00000559931 WIZO95785 1651 aa25.79■■□□□ 1.72
SMAD6-204ENST00000559931 SUPT5HO00267 1087 aaKnown RBP25.76■■□□□ 1.71
SMAD6-204ENST00000559931 NCAPD3P42695 1498 aa25.76■■□□□ 1.71
SMAD6-204ENST00000559931 PEG3Q9GZU2 1588 aa25.74■■□□□ 1.71
SMAD6-204ENST00000559931 BAZ1BQ9UIG0 1483 aaKnown RBP25.68■■□□□ 1.7
SMAD6-204ENST00000559931 HMGXB3Q12766 1538 aa25.65■■□□□ 1.7
SMAD6-204ENST00000559931 TOP2AP11388 1531 aaKnown RBP25.49■■□□□ 1.67
SMAD6-204ENST00000559931 CCDC88BA6NC98 1476 aa25.24■■□□□ 1.63
SMAD6-204ENST00000559931 NESP48681 1621 aa25.19■■□□□ 1.62
SMAD6-204ENST00000559931 LAMC3Q9Y6N6 1575 aa25.08■■□□□ 1.61
SMAD6-204ENST00000559931 CADPSQ9ULU8 1353 aa25.05■■□□□ 1.6
SMAD6-204ENST00000559931 ERCC6Q03468 1493 aa25.03■■□□□ 1.6
SMAD6-204ENST00000559931 CFTRP13569 1480 aa24.95■■□□□ 1.58
SMAD6-204ENST00000559931 PDS5BQ9NTI5 1447 aa24.92■■□□□ 1.58
SMAD6-204ENST00000559931 KIF21AQ7Z4S6 1674 aa24.91■■□□□ 1.58
SMAD6-204ENST00000559931 PRDM2Q13029 1718 aa24.81■■□□□ 1.56
SMAD6-204ENST00000559931 FANCD2Q9BXW9 1451 aa24.78■■□□□ 1.56
SMAD6-204ENST00000559931 CEP164Q9UPV0 1460 aa24.74■■□□□ 1.55
SMAD6-204ENST00000559931 THOC2Q8NI27 1593 aaKnown RBP24.73■■□□□ 1.55
SMAD6-204ENST00000559931 MRC2Q9UBG0 1479 aa24.66■■□□□ 1.54
SMAD6-204ENST00000559931 CUX2O14529 1486 aa24.64■■□□□ 1.53
SMAD6-204ENST00000559931 WDR62O43379 1518 aa24.56■■□□□ 1.52
SMAD6-204ENST00000559931 URB2Q14146 1524 aaKnown RBP24.53■■□□□ 1.52
SMAD6-204ENST00000559931 ABCC8Q09428 1581 aa24.47■■□□□ 1.51
SMAD6-204ENST00000559931 WRNQ14191 1432 aaPredicted RBP eCLIP24.43■■□□□ 1.5
SMAD6-204ENST00000559931 TOPBP1Q92547 1522 aa24.41■■□□□ 1.5
SMAD6-204ENST00000559931 DNMBPQ6XZF7 1577 aa24.4■■□□□ 1.5
SMAD6-204ENST00000559931 CUX1P39880 1505 aa24.38■■□□□ 1.49
SMAD6-204ENST00000559931 SYNJ1O43426 1573 aa24.3■■□□□ 1.48
SMAD6-204ENST00000559931 TRIM41Q8WV44 630 aa24.29■■□□□ 1.48
SMAD6-204ENST00000559931 TOP2BQ02880 1626 aa24.28■■□□□ 1.48
SMAD6-204ENST00000559931 BIVM-ERCC5R4GMW8 1640 aa24.26■■□□□ 1.47
SMAD6-204ENST00000559931 FGD5Q6ZNL6 1462 aa24.25■■□□□ 1.47
SMAD6-204ENST00000559931 CHIC1Q5VXU3 224 aa24.22■■□□□ 1.47
SMAD6-204ENST00000559931 POLA1P09884 1462 aaPredicted RBP24.21■■□□□ 1.47
SMAD6-204ENST00000559931 IFT140Q96RY7 1462 aa24.19■■□□□ 1.46
SMAD6-204ENST00000559931 SOGA1O94964 1423 aa24.19■■□□□ 1.46
SMAD6-204ENST00000559931 RAD54L2Q9Y4B4 1467 aa24.15■■□□□ 1.46
SMAD6-204ENST00000559931 TARBP1Q13395 1621 aaKnown RBP24.13■■□□□ 1.45
SMAD6-204ENST00000559931 ZNF608Q9ULD9 1512 aaPredicted RBP24.12■■□□□ 1.45
SMAD6-204ENST00000559931 TDRD9Q8NDG6 1382 aaKnown RBP24.02■■□□□ 1.44
SMAD6-204ENST00000559931 AQRO60306 1485 aaKnown RBP eCLIP24.01■■□□□ 1.432e-9■■■■■ 47.9
SMAD6-204ENST00000559931 EIF4G3O43432 1585 aaKnown RBP24.01■■□□□ 1.43
SMAD6-204ENST00000559931 ABCA10Q8WWZ4 1543 aa24■■□□□ 1.43
SMAD6-204ENST00000559931 WDR97A6NE52 1622 aa23.97■■□□□ 1.43
SMAD6-204ENST00000559931 KIF27Q86VH2 1401 aa23.9■■□□□ 1.42
SMAD6-204ENST00000559931 GAPVD1Q14C86 1478 aa23.89■■□□□ 1.42
SMAD6-204ENST00000559931 ABCA5Q8WWZ7 1642 aa23.84■■□□□ 1.41
SMAD6-204ENST00000559931 PBRM1Q86U86 1689 aa23.83■■□□□ 1.4
SMAD6-204ENST00000559931 FAM9AQ8IZU1 332 aaPredicted RBP23.82■■□□□ 1.4
SMAD6-204ENST00000559931 GRIN2BQ13224 1484 aa23.81■■□□□ 1.4
SMAD6-204ENST00000559931 RUSC2Q8N2Y8 1516 aa23.81■■□□□ 1.4
SMAD6-204ENST00000559931 SNAPC4Q5SXM2 1469 aa23.78■■□□□ 1.4
SMAD6-204ENST00000559931 FBLN2P98095 1184 aa23.76■■□□□ 1.39
SMAD6-204ENST00000559931 DNAJC5Q9H3Z4 198 aa23.75■■□□□ 1.39
SMAD6-204ENST00000559931 CHD1O14646 1710 aa23.74■■□□□ 1.39
SMAD6-204ENST00000559931 IGF1RP08069 1367 aa23.73■■□□□ 1.39
SMAD6-204ENST00000559931 ERICH3Q5RHP9 1530 aa23.72■■□□□ 1.39
SMAD6-204ENST00000559931 MAGI1Q96QZ7 1491 aaPredicted RBP23.7■■□□□ 1.38
SMAD6-204ENST00000559931 EEA1Q15075 1411 aa23.7■■□□□ 1.38
SMAD6-204ENST00000559931 OSCARQ8IYS5 282 aa23.7■■□□□ 1.38
SMAD6-204ENST00000559931 CSRNP3Q8WYN3 585 aa23.7■■□□□ 1.38
SMAD6-204ENST00000559931 CHMP7Q8WUX9 453 aaPredicted RBP23.68■■□□□ 1.38
SMAD6-204ENST00000559931 CARMIL1Q5VZK9 1371 aa23.63■■□□□ 1.37
SMAD6-204ENST00000559931 SYNJ2O15056 1496 aa23.62■■□□□ 1.37
SMAD6-204ENST00000559931 FHAD1B1AJZ9 1412 aa23.62■■□□□ 1.37
SMAD6-204ENST00000559931 CUL7Q14999 1698 aa23.6■■□□□ 1.37
SMAD6-204ENST00000559931 ADAMTS12P58397 1594 aa23.6■■□□□ 1.37
SMAD6-204ENST00000559931 EHMT2Q96KQ7 1210 aa23.53■■□□□ 1.36
SMAD6-204ENST00000559931 RAPGEF2Q9Y4G8 1499 aa23.51■■□□□ 1.35
SMAD6-204ENST00000559931 GRIN2AQ12879 1464 aa23.49■■□□□ 1.35
SMAD6-204ENST00000559931 PRXQ9BXM0 1461 aa23.49■■□□□ 1.35
SMAD6-204ENST00000559931 CLASP1Q7Z460 1538 aa23.4■■□□□ 1.34
SMAD6-204ENST00000559931 UBTFP17480 764 aaKnown RBP23.4■■□□□ 1.34
SMAD6-204ENST00000559931 KIF21BO75037 1637 aa23.4■■□□□ 1.34
SMAD6-204ENST00000559931 CEP170Q5SW79 1584 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 802.5 ms