RNA–Protein interactions for RNA: ENST00000559463.5

RPL28-208, Transcript of ribosomal protein L28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPL28, Length 852 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28-208ENST00000559463 NISCHQ9Y2I1 1504 aa36.57■■■■□ 3.44
RPL28-208ENST00000559463 CCDC180Q9P1Z9 1646 aa32.69■■■□□ 2.82
RPL28-208ENST00000559463 ABCC9O60706 1549 aa32.09■■■□□ 2.73
RPL28-208ENST00000559463 RB1CC1Q8TDY2 1594 aa30.8■■■□□ 2.52
RPL28-208ENST00000559463 NACADO15069 1562 aa30.71■■■□□ 2.51
RPL28-208ENST00000559463 DCAF8L2P0C7V8 631 aa30.48■■■□□ 2.47
RPL28-208ENST00000559463 MYO15BQ96JP2 1530 aa30.44■■■□□ 2.46
RPL28-208ENST00000559463 ZCCHC6Q5VYS8 1495 aaKnown RBP30.44■■■□□ 2.46
RPL28-208ENST00000559463 UNC13AQ9UPW8 1703 aa30.3■■■□□ 2.44
RPL28-208ENST00000559463 DCAF1Q9Y4B6 1507 aa30.25■■■□□ 2.43
RPL28-208ENST00000559463 BICRAQ9NZM4 1560 aa29.94■■■□□ 2.38
RPL28-208ENST00000559463 PABPN1Q86U42 306 aaKnown RBP eCLIP29.88■■■□□ 2.37
RPL28-208ENST00000559463 SCRIBQ14160 1630 aa29.78■■■□□ 2.36
RPL28-208ENST00000559463 DNAJC5BQ9UF47 199 aa29.62■■■□□ 2.33
RPL28-208ENST00000559463 SHROOM4Q9ULL8 1493 aa29.52■■■□□ 2.32
RPL28-208ENST00000559463 EIF4G1Q04637 1599 aaKnown RBP29.13■■■□□ 2.25
RPL28-208ENST00000559463 CC2D2AQ9P2K1 1620 aa29.09■■■□□ 2.25
RPL28-208ENST00000559463 CECR2Q9BXF3 1484 aa28.85■■■□□ 2.21
RPL28-208ENST00000559463 SMARCA4P51532 1647 aa28.47■■■□□ 2.15
RPL28-208ENST00000559463 BAZ1AQ9NRL2 1556 aaPredicted RBP28.35■■■□□ 2.13
RPL28-208ENST00000559463 ATAD2BQ9ULI0 1458 aa28.31■■■□□ 2.12
RPL28-208ENST00000559463 NCAPD3P42695 1498 aa28.29■■■□□ 2.12
RPL28-208ENST00000559463 SMARCA2P51531 1590 aa28.27■■■□□ 2.12
RPL28-208ENST00000559463 HMGXB3Q12766 1538 aa28.2■■■□□ 2.1
RPL28-208ENST00000559463 MROH2BQ7Z745 1585 aa28.2■■■□□ 2.1
RPL28-208ENST00000559463 PEG3Q9GZU2 1588 aa28.19■■■□□ 2.1
RPL28-208ENST00000559463 BAZ1BQ9UIG0 1483 aaKnown RBP28.05■■■□□ 2.08
RPL28-208ENST00000559463 WIZO95785 1651 aa27.94■■■□□ 2.06
RPL28-208ENST00000559463 RSF1Q96T23 1441 aaPredicted RBP27.75■■■□□ 2.03
RPL28-208ENST00000559463 NESP48681 1621 aa27.74■■■□□ 2.03
RPL28-208ENST00000559463 ERCC6Q03468 1493 aa27.64■■■□□ 2.02
RPL28-208ENST00000559463 LAMC3Q9Y6N6 1575 aa27.64■■■□□ 2.01
RPL28-208ENST00000559463 TOP2AP11388 1531 aaKnown RBP27.58■■■□□ 2.01
RPL28-208ENST00000559463 KIF21AQ7Z4S6 1674 aa27.52■■■□□ 2
RPL28-208ENST00000559463 CUX2O14529 1486 aa27.45■■□□□ 1.99
RPL28-208ENST00000559463 THOC2Q8NI27 1593 aaKnown RBP27.44■■□□□ 1.98
RPL28-208ENST00000559463 CADPSQ9ULU8 1353 aa27.43■■□□□ 1.98
RPL28-208ENST00000559463 PDS5BQ9NTI5 1447 aa27.37■■□□□ 1.97
RPL28-208ENST00000559463 CFTRP13569 1480 aa27.26■■□□□ 1.95
RPL28-208ENST00000559463 PRDM2Q13029 1718 aa27.25■■□□□ 1.95
RPL28-208ENST00000559463 CCDC88BA6NC98 1476 aa27.22■■□□□ 1.95
RPL28-208ENST00000559463 FANCD2Q9BXW9 1451 aa27.16■■□□□ 1.94
RPL28-208ENST00000559463 MRC2Q9UBG0 1479 aa27.16■■□□□ 1.94
RPL28-208ENST00000559463 CEP164Q9UPV0 1460 aa27.15■■□□□ 1.94
RPL28-208ENST00000559463 WDR62O43379 1518 aa27.12■■□□□ 1.93
RPL28-208ENST00000559463 URB2Q14146 1524 aaKnown RBP26.94■■□□□ 1.9
RPL28-208ENST00000559463 SUPT5HO00267 1087 aaKnown RBP26.8■■□□□ 1.88
RPL28-208ENST00000559463 DNAJC5Q9H3Z4 198 aa26.79■■□□□ 1.88
RPL28-208ENST00000559463 TOPBP1Q92547 1522 aa26.74■■□□□ 1.87
RPL28-208ENST00000559463 DNMBPQ6XZF7 1577 aa26.7■■□□□ 1.86
RPL28-208ENST00000559463 ABCC8Q09428 1581 aa26.66■■□□□ 1.86
RPL28-208ENST00000559463 IFT140Q96RY7 1462 aa26.57■■□□□ 1.84
RPL28-208ENST00000559463 ZNF608Q9ULD9 1512 aaPredicted RBP26.52■■□□□ 1.84
RPL28-208ENST00000559463 TARBP1Q13395 1621 aaKnown RBP26.51■■□□□ 1.83
RPL28-208ENST00000559463 POLA1P09884 1462 aaPredicted RBP26.49■■□□□ 1.83
RPL28-208ENST00000559463 CUX1P39880 1505 aa26.47■■□□□ 1.83
RPL28-208ENST00000559463 EIF4G3O43432 1585 aaKnown RBP26.46■■□□□ 1.83
RPL28-208ENST00000559463 FGD5Q6ZNL6 1462 aa26.39■■□□□ 1.82
RPL28-208ENST00000559463 RAD54L2Q9Y4B4 1467 aa26.36■■□□□ 1.81
RPL28-208ENST00000559463 WDR97A6NE52 1622 aa26.31■■□□□ 1.8
RPL28-208ENST00000559463 SOGA1O94964 1423 aa26.31■■□□□ 1.8
RPL28-208ENST00000559463 AQRO60306 1485 aaKnown RBP eCLIP26.3■■□□□ 1.83e-8■■■■□ 26.2
RPL28-208ENST00000559463 BIVM-ERCC5R4GMW8 1640 aa26.24■■□□□ 1.79
RPL28-208ENST00000559463 CHD1O14646 1710 aa26.23■■□□□ 1.79
RPL28-208ENST00000559463 SYNJ1O43426 1573 aa26.2■■□□□ 1.79
RPL28-208ENST00000559463 TOP2BQ02880 1626 aa26.2■■□□□ 1.78
RPL28-208ENST00000559463 TDRD9Q8NDG6 1382 aaKnown RBP26.19■■□□□ 1.78
RPL28-208ENST00000559463 OSCARQ8IYS5 282 aa26.17■■□□□ 1.78
RPL28-208ENST00000559463 WRNQ14191 1432 aaPredicted RBP eCLIP26.15■■□□□ 1.78
RPL28-208ENST00000559463 PBRM1Q86U86 1689 aa26.15■■□□□ 1.78
RPL28-208ENST00000559463 ABCA10Q8WWZ4 1543 aa26.12■■□□□ 1.77
RPL28-208ENST00000559463 ABCA5Q8WWZ7 1642 aa26.11■■□□□ 1.77
RPL28-208ENST00000559463 SNAPC4Q5SXM2 1469 aa26.08■■□□□ 1.77
RPL28-208ENST00000559463 GRIN2BQ13224 1484 aa26.04■■□□□ 1.76
RPL28-208ENST00000559463 GAPVD1Q14C86 1478 aa26.03■■□□□ 1.76
RPL28-208ENST00000559463 MAGI1Q96QZ7 1491 aaPredicted RBP26.03■■□□□ 1.76
RPL28-208ENST00000559463 RIMBP3CA6NJZ7 1639 aa25.96■■□□□ 1.75
RPL28-208ENST00000559463 RIMBP3BA6NNM3 1639 aa25.96■■□□□ 1.75
RPL28-208ENST00000559463 RIMBP3Q9UFD9 1639 aa25.96■■□□□ 1.75
RPL28-208ENST00000559463 FBLN2P98095 1184 aa25.94■■□□□ 1.74
RPL28-208ENST00000559463 SYNJ2O15056 1496 aa25.92■■□□□ 1.74
RPL28-208ENST00000559463 ARHGEF11O15085 1522 aa25.88■■□□□ 1.73
RPL28-208ENST00000559463 CLASP1Q7Z460 1538 aa25.87■■□□□ 1.73
RPL28-208ENST00000559463 ADAMTS12P58397 1594 aa25.86■■□□□ 1.73
RPL28-208ENST00000559463 CHMP7Q8WUX9 453 aaPredicted RBP25.83■■□□□ 1.73
RPL28-208ENST00000559463 TRIM41Q8WV44 630 aa25.81■■□□□ 1.72
RPL28-208ENST00000559463 ERICH3Q5RHP9 1530 aa25.81■■□□□ 1.72
RPL28-208ENST00000559463 GRIN2AQ12879 1464 aa25.74■■□□□ 1.71
RPL28-208ENST00000559463 FHAD1B1AJZ9 1412 aa25.71■■□□□ 1.71
RPL28-208ENST00000559463 CEP170Q5SW79 1584 aa25.69■■□□□ 1.7
RPL28-208ENST00000559463 ARAP1Q96P48 1450 aa25.66■■□□□ 1.7
RPL28-208ENST00000559463 NUP160Q12769 1436 aa25.63■■□□□ 1.69
RPL28-208ENST00000559463 KIF27Q86VH2 1401 aa25.6■■□□□ 1.69
RPL28-208ENST00000559463 CUL7Q14999 1698 aa25.58■■□□□ 1.68
RPL28-208ENST00000559463 SHROOM2Q13796 1616 aa25.55■■□□□ 1.68
RPL28-208ENST00000559463 CYB5RLQ6IPT4 315 aa25.54■■□□□ 1.68
RPL28-208ENST00000559463 IGF1RP08069 1367 aa25.53■■□□□ 1.68
RPL28-208ENST00000559463 ERCC6L2Q5T890 1561 aa25.51■■□□□ 1.67
RPL28-208ENST00000559463 RUSC2Q8N2Y8 1516 aa25.49■■□□□ 1.67
RPL28-208ENST00000559463 CARMIL1Q5VZK9 1371 aa25.35■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms