RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 AEBP2Q6ZN18 517 aaPredicted RBP32.23■■■□□ 2.75
VPS13C-208ENST00000559119 CHIC1Q5VXU3 224 aa30.9■■■□□ 2.54
VPS13C-208ENST00000559119 SENP3Q9H4L4 574 aaPredicted RBP27.53■■■□□ 2
VPS13C-208ENST00000559119 PHF23Q9BUL5 403 aaPredicted RBP27.19■■□□□ 1.94
VPS13C-208ENST00000559119 FOXD1Q16676 465 aa25.59■■□□□ 1.69
VPS13C-208ENST00000559119 PLPPR3Q6T4P5 718 aa24.85■■□□□ 1.57
VPS13C-208ENST00000559119 PPP6R1Q9UPN7 881 aa24.1■■□□□ 1.45
VPS13C-208ENST00000559119 ADRA2BP18089 450 aa24.07■■□□□ 1.44
VPS13C-208ENST00000559119 PIAS4Q8N2W9 510 aaPredicted RBP24.03■■□□□ 1.44
VPS13C-208ENST00000559119 MSH5O43196 834 aa23.91■■□□□ 1.42
VPS13C-208ENST00000559119 POTEDQ86YR6 584 aa22.85■■□□□ 1.25
VPS13C-208ENST00000559119 SCAF1Q9H7N4 1312 aaKnown RBP22.1■■□□□ 1.13
VPS13C-208ENST00000559119 MAPK8IP2Q13387 824 aaPredicted RBP22.02■■□□□ 1.12
VPS13C-208ENST00000559119 DMRT2Q9Y5R5 561 aa21.85■■□□□ 1.09
VPS13C-208ENST00000559119 PPP4R3CPQ6ZMV5 832 aa21.8■■□□□ 1.08
VPS13C-208ENST00000559119 CNKSR2Q8WXI2 1034 aa21.34■■□□□ 1.01
VPS13C-208ENST00000559119 HOXD11P31277 338 aaPredicted RBP21.14■□□□□ 0.97
VPS13C-208ENST00000559119 NCBP3Q53F19 620 aaKnown RBP21.09■□□□□ 0.97
VPS13C-208ENST00000559119 RNF216Q9NWF9 866 aaPredicted RBP21.07■□□□□ 0.96
VPS13C-208ENST00000559119 DCAF8L1A6NGE4 600 aa21.03■□□□□ 0.96
VPS13C-208ENST00000559119 NPM3O75607 178 aaKnown RBP20.72■□□□□ 0.91
VPS13C-208ENST00000559119 KCNA4P22459 653 aa20.54■□□□□ 0.88
VPS13C-208ENST00000559119 CACNB1Q02641 598 aaPredicted RBP20.37■□□□□ 0.85
VPS13C-208ENST00000559119 RNF39Q9H2S5 420 aa20.37■□□□□ 0.85
VPS13C-208ENST00000559119 DNAJC5BQ9UF47 199 aa20.36■□□□□ 0.85
VPS13C-208ENST00000559119 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.21■□□□□ 0.83
VPS13C-208ENST00000559119 C1QBPQ07021 282 aaKnown RBP20.13■□□□□ 0.81
VPS13C-208ENST00000559119 U3KPZ7 1027 aaPredicted RBP19.75■□□□□ 0.75
VPS13C-208ENST00000559119 SLC4A2P04920 1241 aa19.69■□□□□ 0.74
VPS13C-208ENST00000559119 SLC4A1APQ9BWU0 796 aaKnown RBP19.49■□□□□ 0.71
VPS13C-208ENST00000559119 CAPN15O75808 1086 aa19.41■□□□□ 0.7
VPS13C-208ENST00000559119 SPINK5Q9NQ38 1064 aaPredicted RBP19.39■□□□□ 0.69
VPS13C-208ENST00000559119 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.36■□□□□ 0.69
VPS13C-208ENST00000559119 HNRNPUL2Q1KMD3 747 aaKnown RBP19.36■□□□□ 0.69
VPS13C-208ENST00000559119 APLP2Q06481 763 aa19.33■□□□□ 0.68
VPS13C-208ENST00000559119 SAMD1Q6SPF0 538 aaPredicted RBP19.24■□□□□ 0.67
VPS13C-208ENST00000559119 MYCNP04198 464 aaPredicted RBP19.19■□□□□ 0.66
VPS13C-208ENST00000559119 DSG3P32926 999 aa19.17■□□□□ 0.66
VPS13C-208ENST00000559119 TRHP20396 242 aaPredicted RBP19.15■□□□□ 0.66
VPS13C-208ENST00000559119 FOXD4L1Q9NU39 408 aa19.13■□□□□ 0.65
VPS13C-208ENST00000559119 ZNF219Q9P2Y4 722 aaPredicted RBP19.12■□□□□ 0.65
VPS13C-208ENST00000559119 ABCB7O75027 752 aa18.96■□□□□ 0.63
VPS13C-208ENST00000559119 ZBTB22O15209 634 aa18.85■□□□□ 0.61
VPS13C-208ENST00000559119 POLA2Q14181 598 aa18.68■□□□□ 0.58
VPS13C-208ENST00000559119 ATF5Q9Y2D1 282 aaPredicted RBP18.66■□□□□ 0.58
VPS13C-208ENST00000559119 ATXN8OSP0DMR3 200 aa18.51■□□□□ 0.55
VPS13C-208ENST00000559119 ZBTB12Q9Y330 459 aaPredicted RBP18.36■□□□□ 0.53
VPS13C-208ENST00000559119 RBM42Q9BTD8 480 aaKnown RBP18.35■□□□□ 0.53
VPS13C-208ENST00000559119 CSRNP3Q8WYN3 585 aa18.24■□□□□ 0.51
VPS13C-208ENST00000559119 EHMT2Q96KQ7 1210 aa18.21■□□□□ 0.51
VPS13C-208ENST00000559119 OSCARQ8IYS5 282 aa18.06■□□□□ 0.48
VPS13C-208ENST00000559119 FBLN2P98095 1184 aa18.03■□□□□ 0.48
VPS13C-208ENST00000559119 POTEHQ6S545 545 aa17.98■□□□□ 0.47
VPS13C-208ENST00000559119 AKT1S1Q96B36 256 aa17.95■□□□□ 0.46
VPS13C-208ENST00000559119 MKRN4PQ13434 485 aaPredicted RBP17.82■□□□□ 0.44
VPS13C-208ENST00000559119 CHRDL2Q6WN34 429 aa17.81■□□□□ 0.44
VPS13C-208ENST00000559119 SPDYE2BA6NHP3 402 aa17.77■□□□□ 0.44
VPS13C-208ENST00000559119 SPDYE6P0CI01 402 aa17.77■□□□□ 0.44
VPS13C-208ENST00000559119 SPDYE2Q495Y8 402 aa17.77■□□□□ 0.44
VPS13C-208ENST00000559119 REM2Q8IYK8 340 aaPredicted RBP17.77■□□□□ 0.44
VPS13C-208ENST00000559119 ZNF692Q9BU19 519 aaPredicted RBP17.63■□□□□ 0.41
VPS13C-208ENST00000559119 PITPNM1O00562 1244 aa17.58■□□□□ 0.4
VPS13C-208ENST00000559119 SSUH2Q9Y2M2 353 aa17.53■□□□□ 0.4
VPS13C-208ENST00000559119 PIP4P2Q8N4L2 257 aa17.43■□□□□ 0.38
VPS13C-208ENST00000559119 SPDYE1Q8NFV5 336 aaPredicted RBP17.43■□□□□ 0.38
VPS13C-208ENST00000559119 CLEC11AQ9Y240 323 aa17.4■□□□□ 0.38
VPS13C-208ENST00000559119 FXR2P51116 673 aaKnown RBP eCLIP17.36■□□□□ 0.379e-8■□□□□ 10.3
VPS13C-208ENST00000559119 PABPN1Q86U42 306 aaKnown RBP eCLIP17.36■□□□□ 0.37
VPS13C-208ENST00000559119 SPDYE4A6NLX3 237 aa17.18■□□□□ 0.34
VPS13C-208ENST00000559119 PRKAR2AP13861 404 aaKnown RBP17.15■□□□□ 0.34
VPS13C-208ENST00000559119 PRR29P0C7W0 189 aa17.14■□□□□ 0.33
VPS13C-208ENST00000559119 HAX1O00165 279 aa17.1■□□□□ 0.33
VPS13C-208ENST00000559119 CHADLQ6NUI6 762 aa17■□□□□ 0.31
VPS13C-208ENST00000559119 SP7Q8TDD2 431 aaPredicted RBP16.98■□□□□ 0.31
VPS13C-208ENST00000559119 STAG3Q9UJ98 1225 aa16.98■□□□□ 0.31
VPS13C-208ENST00000559119 EVX2Q03828 476 aa16.81■□□□□ 0.28
VPS13C-208ENST00000559119 C19orf67A6NJJ6 358 aa16.8■□□□□ 0.28
VPS13C-208ENST00000559119 FARP1Q9Y4F1 1045 aaPredicted RBP16.78■□□□□ 0.28
VPS13C-208ENST00000559119 PROM2Q8N271 834 aa16.73■□□□□ 0.27
VPS13C-208ENST00000559119 CREBZFQ9NS37 354 aa16.72■□□□□ 0.27
VPS13C-208ENST00000559119 CD44P16070 742 aaKnown RBP16.63■□□□□ 0.25
VPS13C-208ENST00000559119 FKBP8Q14318 412 aa16.58■□□□□ 0.24
VPS13C-208ENST00000559119 GABBR2O75899 941 aa16.5■□□□□ 0.23
VPS13C-208ENST00000559119 NPM1P06748 294 aaKnown RBP eCLIP16.49■□□□□ 0.23
VPS13C-208ENST00000559119 ZRANB1Q9UGI0 708 aa16.45■□□□□ 0.22
VPS13C-208ENST00000559119 MNX1P50219 401 aaPredicted RBP16.43■□□□□ 0.22
VPS13C-208ENST00000559119 PAK3O75914 559 aaPredicted RBP16.41■□□□□ 0.22
VPS13C-208ENST00000559119 PLEKHG5O94827 1062 aa16.41■□□□□ 0.22
VPS13C-208ENST00000559119 MIER1Q8N108 512 aa16.4■□□□□ 0.22
VPS13C-208ENST00000559119 CLCN6P51797 869 aa16.37■□□□□ 0.21
VPS13C-208ENST00000559119 ZNF579Q8NAF0 562 aaKnown RBP16.35■□□□□ 0.21
VPS13C-208ENST00000559119 PLCD3Q8N3E9 789 aa16.3■□□□□ 0.2
VPS13C-208ENST00000559119 FBXO3Q9UK99 471 aa16.21■□□□□ 0.19
VPS13C-208ENST00000559119 PHF12Q96QT6 1004 aa16.2■□□□□ 0.18
VPS13C-208ENST00000559119 TSPYL2Q9H2G4 693 aaPredicted RBP16.18■□□□□ 0.18
VPS13C-208ENST00000559119 ZBTB47Q9UFB7 747 aaPredicted RBP16.18■□□□□ 0.18
VPS13C-208ENST00000559119 DCBLD2Q96PD2 775 aa16.16■□□□□ 0.18
VPS13C-208ENST00000559119 GALR2O43603 387 aaPredicted RBP16.13■□□□□ 0.17
VPS13C-208ENST00000559119 POTEIP0CG38 1075 aa16.1■□□□□ 0.17
VPS13C-208ENST00000559119 RASEFQ8IZ41 740 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms