RNA–Protein interactions for RNA: ENST00000557749.5

LINC00648-204, long intergenic non-protein coding RNA 648, humanhuman

TSL 5 BASIC

Gene LINC00648, Length 443 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00648-204ENST00000557749 AEBP2Q6ZN18 517 aaPredicted RBP32.42■■■□□ 2.78
LINC00648-204ENST00000557749 CHIC1Q5VXU3 224 aa31.52■■■□□ 2.64
LINC00648-204ENST00000557749 NISCHQ9Y2I1 1504 aa27.9■■■□□ 2.06
LINC00648-204ENST00000557749 PHF23Q9BUL5 403 aaPredicted RBP27.87■■■□□ 2.05
LINC00648-204ENST00000557749 SENP3Q9H4L4 574 aaPredicted RBP27.26■■□□□ 1.95
LINC00648-204ENST00000557749 PLPPR3Q6T4P5 718 aa25.48■■□□□ 1.67
LINC00648-204ENST00000557749 FOXD1Q16676 465 aa25.46■■□□□ 1.67
LINC00648-204ENST00000557749 CCDC180Q9P1Z9 1646 aa24.98■■□□□ 1.59
LINC00648-204ENST00000557749 PPP6R1Q9UPN7 881 aa24.59■■□□□ 1.53
LINC00648-204ENST00000557749 ABCC9O60706 1549 aa24.51■■□□□ 1.51
LINC00648-204ENST00000557749 ADRA2BP18089 450 aa24.49■■□□□ 1.51
LINC00648-204ENST00000557749 PIAS4Q8N2W9 510 aaPredicted RBP23.88■■□□□ 1.41
LINC00648-204ENST00000557749 RB1CC1Q8TDY2 1594 aa23.62■■□□□ 1.37
LINC00648-204ENST00000557749 NACADO15069 1562 aa23.55■■□□□ 1.36
LINC00648-204ENST00000557749 MYO15BQ96JP2 1530 aa23.38■■□□□ 1.33
LINC00648-204ENST00000557749 DCAF8L2P0C7V8 631 aa23.33■■□□□ 1.33
LINC00648-204ENST00000557749 MSH5O43196 834 aa23.28■■□□□ 1.32
LINC00648-204ENST00000557749 ZCCHC6Q5VYS8 1495 aaKnown RBP23.2■■□□□ 1.3
LINC00648-204ENST00000557749 DCAF1Q9Y4B6 1507 aa23.17■■□□□ 1.3
LINC00648-204ENST00000557749 UNC13AQ9UPW8 1703 aa22.92■■□□□ 1.26
LINC00648-204ENST00000557749 PABPN1Q86U42 306 aaKnown RBP eCLIP22.81■■□□□ 1.24
LINC00648-204ENST00000557749 SHROOM4Q9ULL8 1493 aa22.78■■□□□ 1.24
LINC00648-204ENST00000557749 BICRAQ9NZM4 1560 aa22.76■■□□□ 1.23
LINC00648-204ENST00000557749 SCRIBQ14160 1630 aa22.64■■□□□ 1.22
LINC00648-204ENST00000557749 DNAJC5BQ9UF47 199 aa22.55■■□□□ 1.2
LINC00648-204ENST00000557749 PPP4R3CPQ6ZMV5 832 aa22.53■■□□□ 1.2
LINC00648-204ENST00000557749 MAPK8IP2Q13387 824 aaPredicted RBP22.27■■□□□ 1.16
LINC00648-204ENST00000557749 EIF4G1Q04637 1599 aaKnown RBP22.25■■□□□ 1.15
LINC00648-204ENST00000557749 CC2D2AQ9P2K1 1620 aa22.19■■□□□ 1.14
LINC00648-204ENST00000557749 SCAF1Q9H7N4 1312 aaKnown RBP22.14■■□□□ 1.14
LINC00648-204ENST00000557749 CECR2Q9BXF3 1484 aa22.11■■□□□ 1.13
LINC00648-204ENST00000557749 KCNA4P22459 653 aa22.08■■□□□ 1.13
LINC00648-204ENST00000557749 DMRT2Q9Y5R5 561 aa21.85■■□□□ 1.09
LINC00648-204ENST00000557749 CNKSR2Q8WXI2 1034 aa21.84■■□□□ 1.09
LINC00648-204ENST00000557749 NCBP3Q53F19 620 aaKnown RBP21.76■■□□□ 1.07
LINC00648-204ENST00000557749 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
LINC00648-204ENST00000557749 NCAPD3P42695 1498 aa21.69■■□□□ 1.06
LINC00648-204ENST00000557749 SMARCA4P51532 1647 aa21.69■■□□□ 1.06
LINC00648-204ENST00000557749 SMARCA2P51531 1590 aa21.68■■□□□ 1.06
LINC00648-204ENST00000557749 NPM3O75607 178 aaKnown RBP21.66■■□□□ 1.06
LINC00648-204ENST00000557749 ATAD2BQ9ULI0 1458 aa21.63■■□□□ 1.05
LINC00648-204ENST00000557749 HMGXB3Q12766 1538 aa21.6■■□□□ 1.05
LINC00648-204ENST00000557749 PEG3Q9GZU2 1588 aa21.53■■□□□ 1.04
LINC00648-204ENST00000557749 BAZ1BQ9UIG0 1483 aaKnown RBP21.48■■□□□ 1.03
LINC00648-204ENST00000557749 RNF216Q9NWF9 866 aaPredicted RBP21.44■■□□□ 1.02
LINC00648-204ENST00000557749 HOXD11P31277 338 aaPredicted RBP21.42■■□□□ 1.02
LINC00648-204ENST00000557749 MROH2BQ7Z745 1585 aa21.42■■□□□ 1.02
LINC00648-204ENST00000557749 POTEDQ86YR6 584 aa21.36■■□□□ 1.01
LINC00648-204ENST00000557749 ERCC6Q03468 1493 aa21.26■□□□□ 0.99
LINC00648-204ENST00000557749 LAMC3Q9Y6N6 1575 aa21.19■□□□□ 0.98
LINC00648-204ENST00000557749 WIZO95785 1651 aa21.16■□□□□ 0.98
LINC00648-204ENST00000557749 CUX2O14529 1486 aa21.15■□□□□ 0.98
LINC00648-204ENST00000557749 RSF1Q96T23 1441 aaPredicted RBP21.13■□□□□ 0.97
LINC00648-204ENST00000557749 NESP48681 1621 aa21.09■□□□□ 0.97
LINC00648-204ENST00000557749 PDS5BQ9NTI5 1447 aa21.07■□□□□ 0.96
LINC00648-204ENST00000557749 CADPSQ9ULU8 1353 aa21.04■□□□□ 0.96
LINC00648-204ENST00000557749 TOP2AP11388 1531 aaKnown RBP21.04■□□□□ 0.96
LINC00648-204ENST00000557749 THOC2Q8NI27 1593 aaKnown RBP20.9■□□□□ 0.94
LINC00648-204ENST00000557749 SLC4A1APQ9BWU0 796 aaKnown RBP20.9■□□□□ 0.94
LINC00648-204ENST00000557749 KIF21AQ7Z4S6 1674 aa20.89■□□□□ 0.93
LINC00648-204ENST00000557749 CFTRP13569 1480 aa20.87■□□□□ 0.93
LINC00648-204ENST00000557749 MRC2Q9UBG0 1479 aa20.82■□□□□ 0.92
LINC00648-204ENST00000557749 CEP164Q9UPV0 1460 aa20.81■□□□□ 0.92
LINC00648-204ENST00000557749 FANCD2Q9BXW9 1451 aa20.78■□□□□ 0.92
LINC00648-204ENST00000557749 WDR62O43379 1518 aa20.75■□□□□ 0.91
LINC00648-204ENST00000557749 DCAF8L1A6NGE4 600 aa20.74■□□□□ 0.91
LINC00648-204ENST00000557749 CCDC88BA6NC98 1476 aa20.72■□□□□ 0.91
LINC00648-204ENST00000557749 PRDM2Q13029 1718 aa20.71■□□□□ 0.91
LINC00648-204ENST00000557749 DNAJC5Q9H3Z4 198 aa20.65■□□□□ 0.9
LINC00648-204ENST00000557749 SLC4A2P04920 1241 aa20.54■□□□□ 0.88
LINC00648-204ENST00000557749 ABCC8Q09428 1581 aa20.54■□□□□ 0.88
LINC00648-204ENST00000557749 URB2Q14146 1524 aaKnown RBP20.52■□□□□ 0.87
LINC00648-204ENST00000557749 ZBTB22O15209 634 aa20.42■□□□□ 0.86
LINC00648-204ENST00000557749 IFT140Q96RY7 1462 aa20.41■□□□□ 0.86
LINC00648-204ENST00000557749 DNMBPQ6XZF7 1577 aa20.41■□□□□ 0.86
LINC00648-204ENST00000557749 TOPBP1Q92547 1522 aa20.4■□□□□ 0.86
LINC00648-204ENST00000557749 SUPT5HO00267 1087 aaKnown RBP20.38■□□□□ 0.85
LINC00648-204ENST00000557749 EHMT2Q96KQ7 1210 aa20.32■□□□□ 0.84
LINC00648-204ENST00000557749 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.26■□□□□ 0.83
LINC00648-204ENST00000557749 CSRNP3Q8WYN3 585 aa20.23■□□□□ 0.83
LINC00648-204ENST00000557749 POLA1P09884 1462 aaPredicted RBP20.22■□□□□ 0.83
LINC00648-204ENST00000557749 FOXD4L1Q9NU39 408 aa20.2■□□□□ 0.82
LINC00648-204ENST00000557749 OSCARQ8IYS5 282 aa20.19■□□□□ 0.82
LINC00648-204ENST00000557749 WDR97A6NE52 1622 aa20.19■□□□□ 0.82
LINC00648-204ENST00000557749 ZNF608Q9ULD9 1512 aaPredicted RBP20.18■□□□□ 0.82
LINC00648-204ENST00000557749 TARBP1Q13395 1621 aaKnown RBP20.18■□□□□ 0.82
LINC00648-204ENST00000557749 EIF4G3O43432 1585 aaKnown RBP20.17■□□□□ 0.82
LINC00648-204ENST00000557749 SOGA1O94964 1423 aa20.15■□□□□ 0.82
LINC00648-204ENST00000557749 FGD5Q6ZNL6 1462 aa20.13■□□□□ 0.81
LINC00648-204ENST00000557749 CUX1P39880 1505 aa20.12■□□□□ 0.81
LINC00648-204ENST00000557749 RNF39Q9H2S5 420 aa20.09■□□□□ 0.81
LINC00648-204ENST00000557749 U3KPZ7 1027 aaPredicted RBP20.09■□□□□ 0.81
LINC00648-204ENST00000557749 AQRO60306 1485 aaKnown RBP eCLIP20.06■□□□□ 0.8
LINC00648-204ENST00000557749 RAD54L2Q9Y4B4 1467 aa20.05■□□□□ 0.8
LINC00648-204ENST00000557749 WRNQ14191 1432 aaPredicted RBP eCLIP20■□□□□ 0.79
LINC00648-204ENST00000557749 TDRD9Q8NDG6 1382 aaKnown RBP19.99■□□□□ 0.79
LINC00648-204ENST00000557749 GRIN2BQ13224 1484 aa19.98■□□□□ 0.79
LINC00648-204ENST00000557749 MAGI1Q96QZ7 1491 aaPredicted RBP19.98■□□□□ 0.79
LINC00648-204ENST00000557749 TOP2BQ02880 1626 aa19.97■□□□□ 0.79
LINC00648-204ENST00000557749 ABCA10Q8WWZ4 1543 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 119.6 ms