RNA–Protein interactions for RNA: ENST00000556249.1

SDR39U1-217, Transcript of short chain dehydrogenase/reductase family 39U member 1, humanhuman

TSL 3

Gene SDR39U1, Length 556 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDR39U1-217ENST00000556249 NISCHQ9Y2I1 1504 aa40.19■■■■■ 4.02
SDR39U1-217ENST00000556249 ABCC9O60706 1549 aa36.96■■■■□ 3.51
SDR39U1-217ENST00000556249 CCDC180Q9P1Z9 1646 aa36.19■■■■□ 3.38
SDR39U1-217ENST00000556249 DNAJC5BQ9UF47 199 aa35.25■■■■□ 3.23
SDR39U1-217ENST00000556249 RB1CC1Q8TDY2 1594 aa34.78■■■■□ 3.16
SDR39U1-217ENST00000556249 PABPN1Q86U42 306 aaKnown RBP eCLIP34.41■■■■□ 3.12e-8■□□□□ 11.2
SDR39U1-217ENST00000556249 DCAF8L2P0C7V8 631 aa34.39■■■■□ 3.1
SDR39U1-217ENST00000556249 NACADO15069 1562 aa34.39■■■■□ 3.1
SDR39U1-217ENST00000556249 UNC13AQ9UPW8 1703 aa34.03■■■■□ 3.04
SDR39U1-217ENST00000556249 BICRAQ9NZM4 1560 aa33.85■■■■□ 3.01
SDR39U1-217ENST00000556249 MYO15BQ96JP2 1530 aa33.65■■■□□ 2.98
SDR39U1-217ENST00000556249 CECR2Q9BXF3 1484 aa33.3■■■□□ 2.92
SDR39U1-217ENST00000556249 CC2D2AQ9P2K1 1620 aa33.29■■■□□ 2.92
SDR39U1-217ENST00000556249 ZCCHC6Q5VYS8 1495 aaKnown RBP33.17■■■□□ 2.9
SDR39U1-217ENST00000556249 SHROOM4Q9ULL8 1493 aa33.14■■■□□ 2.9
SDR39U1-217ENST00000556249 SCRIBQ14160 1630 aa33.11■■■□□ 2.89
SDR39U1-217ENST00000556249 EIF4G1Q04637 1599 aaKnown RBP33.05■■■□□ 2.88
SDR39U1-217ENST00000556249 DCAF1Q9Y4B6 1507 aa33.05■■■□□ 2.88
SDR39U1-217ENST00000556249 DNAJC5Q9H3Z4 198 aa32.66■■■□□ 2.82
SDR39U1-217ENST00000556249 CUX2O14529 1486 aa31.93■■■□□ 2.7
SDR39U1-217ENST00000556249 ERCC6Q03468 1493 aa31.9■■■□□ 2.7
SDR39U1-217ENST00000556249 NCAPD3P42695 1498 aa31.8■■■□□ 2.68
SDR39U1-217ENST00000556249 ATAD2BQ9ULI0 1458 aa31.66■■■□□ 2.66
SDR39U1-217ENST00000556249 NESP48681 1621 aa31.6■■■□□ 2.65
SDR39U1-217ENST00000556249 SMARCA2P51531 1590 aa31.47■■■□□ 2.63
SDR39U1-217ENST00000556249 SMARCA4P51532 1647 aa31.46■■■□□ 2.63
SDR39U1-217ENST00000556249 HMGXB3Q12766 1538 aa31.45■■■□□ 2.63
SDR39U1-217ENST00000556249 BAZ1BQ9UIG0 1483 aaKnown RBP31.32■■■□□ 2.6
SDR39U1-217ENST00000556249 THOC2Q8NI27 1593 aaKnown RBP31.28■■■□□ 2.6
SDR39U1-217ENST00000556249 BAZ1AQ9NRL2 1556 aaPredicted RBP31.19■■■□□ 2.58
SDR39U1-217ENST00000556249 LAMC3Q9Y6N6 1575 aa31.13■■■□□ 2.57
SDR39U1-217ENST00000556249 TRIM41Q8WV44 630 aa31.13■■■□□ 2.57
SDR39U1-217ENST00000556249 KIF21AQ7Z4S6 1674 aa31.09■■■□□ 2.57
SDR39U1-217ENST00000556249 PEG3Q9GZU2 1588 aa31.09■■■□□ 2.57
SDR39U1-217ENST00000556249 MROH2BQ7Z745 1585 aa31.02■■■□□ 2.56
SDR39U1-217ENST00000556249 PDS5BQ9NTI5 1447 aa31.01■■■□□ 2.55
SDR39U1-217ENST00000556249 CADPSQ9ULU8 1353 aa30.84■■■□□ 2.53
SDR39U1-217ENST00000556249 MRC2Q9UBG0 1479 aa30.79■■■□□ 2.52
SDR39U1-217ENST00000556249 WDR62O43379 1518 aa30.72■■■□□ 2.51
SDR39U1-217ENST00000556249 WIZO95785 1651 aa30.63■■■□□ 2.49
SDR39U1-217ENST00000556249 CEP164Q9UPV0 1460 aa30.56■■■□□ 2.48
SDR39U1-217ENST00000556249 FANCD2Q9BXW9 1451 aa30.5■■■□□ 2.47
SDR39U1-217ENST00000556249 OSCARQ8IYS5 282 aa30.49■■■□□ 2.47
SDR39U1-217ENST00000556249 CFTRP13569 1480 aa30.35■■■□□ 2.45
SDR39U1-217ENST00000556249 URB2Q14146 1524 aaKnown RBP30.31■■■□□ 2.44
SDR39U1-217ENST00000556249 RSF1Q96T23 1441 aaPredicted RBP30.17■■■□□ 2.42
SDR39U1-217ENST00000556249 TOP2AP11388 1531 aaKnown RBP30.12■■■□□ 2.41
SDR39U1-217ENST00000556249 RIMBP3CA6NJZ7 1639 aa30.12■■■□□ 2.41
SDR39U1-217ENST00000556249 RIMBP3BA6NNM3 1639 aa30.12■■■□□ 2.41
SDR39U1-217ENST00000556249 RIMBP3Q9UFD9 1639 aa30.12■■■□□ 2.41
SDR39U1-217ENST00000556249 ZNF608Q9ULD9 1512 aaPredicted RBP30.06■■■□□ 2.4
SDR39U1-217ENST00000556249 ARHGEF11O15085 1522 aa29.97■■■□□ 2.39
SDR39U1-217ENST00000556249 IFT140Q96RY7 1462 aa29.95■■■□□ 2.39
SDR39U1-217ENST00000556249 PRDM2Q13029 1718 aa29.91■■■□□ 2.38
SDR39U1-217ENST00000556249 CYB5RLQ6IPT4 315 aa29.9■■■□□ 2.38
SDR39U1-217ENST00000556249 CCDC88BA6NC98 1476 aa29.87■■■□□ 2.37
SDR39U1-217ENST00000556249 TOPBP1Q92547 1522 aa29.86■■■□□ 2.37
SDR39U1-217ENST00000556249 EIF4G3O43432 1585 aaKnown RBP29.78■■■□□ 2.36
SDR39U1-217ENST00000556249 TRHP20396 242 aaPredicted RBP29.76■■■□□ 2.35
SDR39U1-217ENST00000556249 AQRO60306 1485 aaKnown RBP eCLIP29.74■■■□□ 2.35
SDR39U1-217ENST00000556249 FBLN2P98095 1184 aa29.71■■■□□ 2.35
SDR39U1-217ENST00000556249 CHD1O14646 1710 aa29.68■■■□□ 2.34
SDR39U1-217ENST00000556249 ABCC8Q09428 1581 aa29.66■■■□□ 2.34
SDR39U1-217ENST00000556249 ARAP1Q96P48 1450 aa29.66■■■□□ 2.34
SDR39U1-217ENST00000556249 DNMBPQ6XZF7 1577 aa29.65■■■□□ 2.34
SDR39U1-217ENST00000556249 TARBP1Q13395 1621 aaKnown RBP29.61■■■□□ 2.33
SDR39U1-217ENST00000556249 POLA1P09884 1462 aaPredicted RBP29.53■■■□□ 2.32
SDR39U1-217ENST00000556249 RAD54L2Q9Y4B4 1467 aa29.5■■■□□ 2.31
SDR39U1-217ENST00000556249 TDRD9Q8NDG6 1382 aaKnown RBP29.48■■■□□ 2.31
SDR39U1-217ENST00000556249 SOGA1O94964 1423 aa29.41■■■□□ 2.3
SDR39U1-217ENST00000556249 SNAPC4Q5SXM2 1469 aa29.36■■■□□ 2.29
SDR39U1-217ENST00000556249 CHMP7Q8WUX9 453 aaPredicted RBP29.33■■■□□ 2.29
SDR39U1-217ENST00000556249 CLASP1Q7Z460 1538 aa29.3■■■□□ 2.28
SDR39U1-217ENST00000556249 FGD5Q6ZNL6 1462 aa29.28■■■□□ 2.28
SDR39U1-217ENST00000556249 AEBP2Q6ZN18 517 aaPredicted RBP29.26■■■□□ 2.27
SDR39U1-217ENST00000556249 SYNJ1O43426 1573 aa29.22■■■□□ 2.27
SDR39U1-217ENST00000556249 MAGI1Q96QZ7 1491 aaPredicted RBP29.17■■■□□ 2.26
SDR39U1-217ENST00000556249 CUX1P39880 1505 aa29.16■■■□□ 2.26
SDR39U1-217ENST00000556249 GRIN2BQ13224 1484 aa29.16■■■□□ 2.26
SDR39U1-217ENST00000556249 WDR97A6NE52 1622 aa29.13■■■□□ 2.25
SDR39U1-217ENST00000556249 SYNJ2O15056 1496 aa29.12■■■□□ 2.25
SDR39U1-217ENST00000556249 GAPVD1Q14C86 1478 aa29.08■■■□□ 2.25
SDR39U1-217ENST00000556249 PBRM1Q86U86 1689 aa28.99■■■□□ 2.23
SDR39U1-217ENST00000556249 ERCC6L2Q5T890 1561 aa28.92■■■□□ 2.22
SDR39U1-217ENST00000556249 ABCA5Q8WWZ7 1642 aa28.86■■■□□ 2.21
SDR39U1-217ENST00000556249 ABCA10Q8WWZ4 1543 aa28.85■■■□□ 2.21
SDR39U1-217ENST00000556249 GRIN2AQ12879 1464 aa28.8■■■□□ 2.2
SDR39U1-217ENST00000556249 CEP170Q5SW79 1584 aa28.75■■■□□ 2.19
SDR39U1-217ENST00000556249 NUP160Q12769 1436 aa28.7■■■□□ 2.19
SDR39U1-217ENST00000556249 ADAMTS12P58397 1594 aa28.69■■■□□ 2.18
SDR39U1-217ENST00000556249 WRNQ14191 1432 aaPredicted RBP eCLIP28.65■■■□□ 2.18
SDR39U1-217ENST00000556249 SHROOM2Q13796 1616 aa28.61■■■□□ 2.17
SDR39U1-217ENST00000556249 FHAD1B1AJZ9 1412 aa28.6■■■□□ 2.17
SDR39U1-217ENST00000556249 SUPT5HO00267 1087 aaKnown RBP28.58■■■□□ 2.17
SDR39U1-217ENST00000556249 KIF13AQ9H1H9 1805 aa28.57■■■□□ 2.16
SDR39U1-217ENST00000556249 PRG4Q92954 1404 aaPredicted RBP28.54■■■□□ 2.16
SDR39U1-217ENST00000556249 JPH4Q96JJ6 628 aa28.49■■■□□ 2.15
SDR39U1-217ENST00000556249 TOP2BQ02880 1626 aa28.48■■■□□ 2.15
SDR39U1-217ENST00000556249 FAM69CQ0P6D2 419 aa28.47■■■□□ 2.15
SDR39U1-217ENST00000556249 BIVM-ERCC5R4GMW8 1640 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms