RNA–Protein interactions for RNA: ENST00000555962.5

CHD8-210, Transcript of chromodomain helicase DNA binding protein 8, humanhuman

TSL 5

Gene CHD8, Length 1,232 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8-210ENST00000555962 NOLC1Q14978 699 aaKnown RBP eCLIP9.8□□□□□ -0.841e-323■■■■■ 33.9
CHD8-210ENST00000555962 AATFQ9NY61 560 aaKnown RBP eCLIP10.87□□□□□ -0.673e-48■■■■□ 19.8
CHD8-210ENST00000555962 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.26□□□□□ -1.255e-41■□□□□ 8.6
CHD8-210ENST00000555962 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.3□□□□□ -1.082e-31■□□□□ 8.2
CHD8-210ENST00000555962 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.77□□□□□ -1.016e-31■■■■■ 542.8
CHD8-210ENST00000555962 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.56□□□□□ -0.881e-29■□□□□ 10.4
CHD8-210ENST00000555962 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.81□□□□□ -17e-24■■■■■ 47.1
CHD8-210ENST00000555962 NIP7Q9Y221 180 aaKnown RBP eCLIP11.5□□□□□ -0.576e-20■■■□□ 16.1
CHD8-210ENST00000555962 DKC1O60832 514 aaKnown RBP eCLIP10.03□□□□□ -0.81e-18■■■■■ 28.7
CHD8-210ENST00000555962 SMNDC1O75940 238 aaKnown RBP eCLIP8.36□□□□□ -1.074e-18■■■■■ 36.5
CHD8-210ENST00000555962 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.06□□□□□ -0.968e-17■■□□□ 14.5
CHD8-210ENST00000555962 ZRANB2O95218 330 aaKnown RBP eCLIP9.13□□□□□ -0.951e-12■■□□□ 14.2
CHD8-210ENST00000555962 AGGF1Q8N302 714 aaeCLIP8.89□□□□□ -0.999e-10■□□□□ 8.9
CHD8-210ENST00000555962 KHSRPQ92945 711 aaKnown RBP eCLIP10.38□□□□□ -0.751e-9■■■□□ 16.6
CHD8-210ENST00000555962 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.99□□□□□ -0.812e-9■□□□□ 11.3
CHD8-210ENST00000555962 NIPBLQ6KC79 2804 aaeCLIP7.53□□□□□ -1.21e-8■■■□□ 18.9
CHD8-210ENST00000555962 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.67□□□□□ -1.023e-8■■■□□ 17.4
CHD8-210ENST00000555962 SF3B4Q15427 424 aaKnown RBP eCLIP8.03□□□□□ -1.129e-8■■■□□ 14.8
CHD8-210ENST00000555962 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.93□□□□□ -0.821e-7■■■■■ 28.6
CHD8-210ENST00000555962 DDX3XO00571 662 aaKnown RBP eCLIP9.37□□□□□ -0.911e-7■□□□□ 11
CHD8-210ENST00000555962 U2AF2P26368 475 aaKnown RBP eCLIP10.17□□□□□ -0.781e-7■■■■■ 27.1
CHD8-210ENST00000555962 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.01□□□□□ -0.492e-7■■■□□ 18
CHD8-210ENST00000555962 PCBP1Q15365 356 aaKnown RBP eCLIP9.87□□□□□ -0.836e-7■■□□□ 12.7
CHD8-210ENST00000555962 TRA2AQ13595 282 aaKnown RBP eCLIP8.67□□□□□ -1.026e-7■■■■□ 23.9
CHD8-210ENST00000555962 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.39□□□□□ -0.917e-7■■■■□ 19.7
CHD8-210ENST00000555962 ZNF622Q969S3 477 aaKnown RBP eCLIP11.37□□□□□ -0.597e-7■■■□□ 15.8
CHD8-210ENST00000555962 AQRO60306 1485 aaKnown RBP eCLIP15.44■□□□□ 0.067e-7■■■■■ 28.5
CHD8-210ENST00000555962 FXR2P51116 673 aaKnown RBP eCLIP11.59□□□□□ -0.557e-7■■■■□ 24.8
CHD8-210ENST00000555962 SSBP05455 408 aaKnown RBP eCLIP9.95□□□□□ -0.828e-7■■■■□ 22.6
CHD8-210ENST00000555962 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.62□□□□□ -1.191e-6■■■■□ 19.9
CHD8-210ENST00000555962 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.12□□□□□ -0.151e-6■■■□□ 19
CHD8-210ENST00000555962 SF3A3Q12874 501 aaKnown RBP eCLIP8.29□□□□□ -1.081e-6■□□□□ 11
CHD8-210ENST00000555962 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.74□□□□□ -1.011e-6■□□□□ 9.7
CHD8-210ENST00000555962 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.33□□□□□ -0.921e-6■□□□□ 10.4
CHD8-210ENST00000555962 YBX3P16989 372 aaKnown RBP eCLIP11.39□□□□□ -0.592e-6■□□□□ 10.4
CHD8-210ENST00000555962 EFTUD2Q15029 972 aaKnown RBP eCLIP8.74□□□□□ -1.012e-6■■■■■ 28.3
CHD8-210ENST00000555962 PUM1Q14671 1186 aaKnown RBP eCLIP8.84□□□□□ -0.992e-6■□□□□ 9.8
CHD8-210ENST00000555962 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.63□□□□□ -0.872e-6■■■■■ 149.1
CHD8-210ENST00000555962 PPIGQ13427 754 aaKnown RBP eCLIP9.99□□□□□ -0.813e-6■■□□□ 14.3
CHD8-210ENST00000555962 EIF3DO15371 548 aaKnown RBP eCLIP9.8□□□□□ -0.843e-6■■■■□ 21.5
CHD8-210ENST00000555962 G3BP1Q13283 466 aaKnown RBP eCLIP11.11□□□□□ -0.633e-6■■■■□ 19.7
CHD8-210ENST00000555962 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.84□□□□□ -0.673e-6■■■■■ 26.9
CHD8-210ENST00000555962 SF3B1O75533 1304 aaKnown RBP eCLIP9.68□□□□□ -0.863e-6■■■■■ 137.9
CHD8-210ENST00000555962 EIF3HO15372 352 aaKnown RBP eCLIP8.79□□□□□ -14e-6■■□□□ 12.4
CHD8-210ENST00000555962 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.38□□□□□ -1.075e-6■■■■■ 56.5
CHD8-210ENST00000555962 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.55□□□□□ -1.046e-6■■□□□ 12.4
CHD8-210ENST00000555962 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.45□□□□□ -0.427e-6■■■■□ 19.6
CHD8-210ENST00000555962 AARSP49588 968 aaKnown RBP eCLIP9.68□□□□□ -0.868e-6■■■■■ 52.4
CHD8-210ENST00000555962 FMR1Q06787 632 aaKnown RBP eCLIP10.94□□□□□ -0.669e-6■■■■□ 20.6
Retrieved 49 of 49 RNA–protein pairs in 9.2 ms