RNA–Protein interactions for RNA: ENST00000555172.5

KTN1-220, Transcript of kinectin 1, humanhuman

TSL 2

Gene KTN1, Length 1,985 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KTN1-220ENST00000555172 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.29□□□□□ -1.725e-13■■■■■ 83.1
KTN1-220ENST00000555172 SF3B4Q15427 424 aaKnown RBP eCLIP3.42□□□□□ -1.868e-11■■■□□ 14.9
KTN1-220ENST00000555172 PABPC4Q13310 644 aaKnown RBP eCLIP4.78□□□□□ -1.646e-10■■■■□ 26.2
KTN1-220ENST00000555172 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.72□□□□□ -1.817e-10■■□□□ 11.8
KTN1-220ENST00000555172 KHSRPQ92945 711 aaKnown RBP eCLIP7.93□□□□□ -1.149e-9■■■■■ 27.2
KTN1-220ENST00000555172 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.46□□□□□ -2.181e-8■□□□□ 8.4
KTN1-220ENST00000555172 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.24□□□□□ -1.092e-8■■■■□ 20.5
KTN1-220ENST00000555172 EIF3DO15371 548 aaKnown RBP eCLIP3.88□□□□□ -1.793e-8■□□□□ 10.6
KTN1-220ENST00000555172 AGGF1Q8N302 714 aaeCLIP5.05□□□□□ -1.64e-8■■■□□ 14.9
KTN1-220ENST00000555172 FXR2P51116 673 aaKnown RBP eCLIP9.97□□□□□ -0.819e-8■■■□□ 15.8
KTN1-220ENST00000555172 ZNF622Q969S3 477 aaKnown RBP eCLIP4.4□□□□□ -1.79e-8■□□□□ 9.4
KTN1-220ENST00000555172 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.11□□□□□ -1.591e-7■□□□□ 9.6
KTN1-220ENST00000555172 TIAL1Q01085 375 aaKnown RBP eCLIP3.83□□□□□ -1.83e-7■■■■□ 25.7
KTN1-220ENST00000555172 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.97□□□□□ -1.453e-7■□□□□ 11.2
KTN1-220ENST00000555172 HLTFQ14527 1009 aaKnown RBP eCLIP4.76□□□□□ -1.653e-7■□□□□ 8.3
KTN1-220ENST00000555172 TRA2AQ13595 282 aaKnown RBP eCLIP4□□□□□ -1.773e-7■■■■■ 31.7
KTN1-220ENST00000555172 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.86□□□□□ -1.796e-7■□□□□ 8.9
KTN1-220ENST00000555172 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.34□□□□□ -0.596e-7■□□□□ 9.4
KTN1-220ENST00000555172 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.56□□□□□ -1.848e-7■■□□□ 12.5
KTN1-220ENST00000555172 QKIQ96PU8 341 aaKnown RBP eCLIP2.93□□□□□ -1.941e-6■■■■■ 31
KTN1-220ENST00000555172 RBM15Q96T37 977 aaKnown RBP eCLIP4.08□□□□□ -1.762e-6■□□□□ 9.1
KTN1-220ENST00000555172 U2AF2P26368 475 aaKnown RBP eCLIP3.65□□□□□ -1.832e-6■■□□□ 14.5
KTN1-220ENST00000555172 HNRNPMP52272 730 aaKnown RBP eCLIP3.67□□□□□ -1.822e-6■■□□□ 13.9
KTN1-220ENST00000555172 AARSP49588 968 aaKnown RBP eCLIP4.16□□□□□ -1.742e-6■□□□□ 10.9
KTN1-220ENST00000555172 G3BP1Q13283 466 aaKnown RBP eCLIP4.56□□□□□ -1.683e-6■■■■□ 22
KTN1-220ENST00000555172 AQRO60306 1485 aaKnown RBP eCLIP3.2□□□□□ -1.93e-6■■■■□ 24.7
KTN1-220ENST00000555172 ZC3H11AO75152 810 aaKnown RBP eCLIP3.91□□□□□ -1.784e-6■□□□□ 9.1
Retrieved 27 of 27 RNA–protein pairs in 7.4 ms