RNA–Protein interactions for RNA: ENST00000554264.5

VPS33B-203, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-203ENST00000554264 AEBP2Q6ZN18 517 aaPredicted RBP22.95■■□□□ 1.26
VPS33B-203ENST00000554264 CHIC1Q5VXU3 224 aa22.31■■□□□ 1.16
VPS33B-203ENST00000554264 PHF23Q9BUL5 403 aaPredicted RBP19.73■□□□□ 0.75
VPS33B-203ENST00000554264 SENP3Q9H4L4 574 aaPredicted RBP19.32■□□□□ 0.68
VPS33B-203ENST00000554264 PLPPR3Q6T4P5 718 aa18.05■□□□□ 0.48
VPS33B-203ENST00000554264 FOXD1Q16676 465 aa18.04■□□□□ 0.48
VPS33B-203ENST00000554264 PPP6R1Q9UPN7 881 aa17.42■□□□□ 0.38
VPS33B-203ENST00000554264 ADRA2BP18089 450 aa17.37■□□□□ 0.37
VPS33B-203ENST00000554264 PIAS4Q8N2W9 510 aaPredicted RBP16.94■□□□□ 0.3
VPS33B-203ENST00000554264 MSH5O43196 834 aa16.5■□□□□ 0.23
VPS33B-203ENST00000554264 PPP4R3CPQ6ZMV5 832 aa15.97■□□□□ 0.15
VPS33B-203ENST00000554264 MAPK8IP2Q13387 824 aaPredicted RBP15.79■□□□□ 0.12
VPS33B-203ENST00000554264 SCAF1Q9H7N4 1312 aaKnown RBP15.71■□□□□ 0.11
VPS33B-203ENST00000554264 KCNA4P22459 653 aa15.64■□□□□ 0.09
VPS33B-203ENST00000554264 CNKSR2Q8WXI2 1034 aa15.47■□□□□ 0.07
VPS33B-203ENST00000554264 DMRT2Q9Y5R5 561 aa15.47■□□□□ 0.07
VPS33B-203ENST00000554264 NCBP3Q53F19 620 aaKnown RBP15.43■□□□□ 0.06
VPS33B-203ENST00000554264 NPM3O75607 178 aaKnown RBP15.34■□□□□ 0.05
VPS33B-203ENST00000554264 RNF216Q9NWF9 866 aaPredicted RBP15.18■□□□□ 0.02
VPS33B-203ENST00000554264 HOXD11P31277 338 aaPredicted RBP15.15■□□□□ 0.02
VPS33B-203ENST00000554264 POTEDQ86YR6 584 aa15.14■□□□□ 0.01
VPS33B-203ENST00000554264 DNAJC5BQ9UF47 199 aa14.85□□□□□ -0.03
VPS33B-203ENST00000554264 SLC4A1APQ9BWU0 796 aaKnown RBP14.81□□□□□ -0.04
VPS33B-203ENST00000554264 DCAF8L1A6NGE4 600 aa14.75□□□□□ -0.05
VPS33B-203ENST00000554264 SLC4A2P04920 1241 aa14.53□□□□□ -0.08
VPS33B-203ENST00000554264 ZBTB22O15209 634 aa14.44□□□□□ -0.1
VPS33B-203ENST00000554264 EHMT2Q96KQ7 1210 aa14.41□□□□□ -0.1
VPS33B-203ENST00000554264 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.39□□□□□ -0.11
VPS33B-203ENST00000554264 CSRNP3Q8WYN3 585 aa14.32□□□□□ -0.12
VPS33B-203ENST00000554264 FOXD4L1Q9NU39 408 aa14.31□□□□□ -0.12
VPS33B-203ENST00000554264 U3KPZ7 1027 aaPredicted RBP14.23□□□□□ -0.13
VPS33B-203ENST00000554264 RNF39Q9H2S5 420 aa14.22□□□□□ -0.13
VPS33B-203ENST00000554264 MYCNP04198 464 aaPredicted RBP14.09□□□□□ -0.15
VPS33B-203ENST00000554264 C1QBPQ07021 282 aaKnown RBP13.99□□□□□ -0.17
VPS33B-203ENST00000554264 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.89□□□□□ -0.19
VPS33B-203ENST00000554264 HNRNPUL2Q1KMD3 747 aaKnown RBP13.89□□□□□ -0.19
VPS33B-203ENST00000554264 SAMD1Q6SPF0 538 aaPredicted RBP13.88□□□□□ -0.19
VPS33B-203ENST00000554264 ATF5Q9Y2D1 282 aaPredicted RBP13.87□□□□□ -0.19
VPS33B-203ENST00000554264 SPINK5Q9NQ38 1064 aaPredicted RBP13.86□□□□□ -0.19
VPS33B-203ENST00000554264 CACNB1Q02641 598 aaPredicted RBP13.8□□□□□ -0.2
VPS33B-203ENST00000554264 ATXN8OSP0DMR3 200 aa13.78□□□□□ -0.2
VPS33B-203ENST00000554264 CAPN15O75808 1086 aa13.71□□□□□ -0.21
VPS33B-203ENST00000554264 APLP2Q06481 763 aa13.7□□□□□ -0.22
VPS33B-203ENST00000554264 TRHP20396 242 aaPredicted RBP13.67□□□□□ -0.22
VPS33B-203ENST00000554264 ZNF219Q9P2Y4 722 aaPredicted RBP13.59□□□□□ -0.23
VPS33B-203ENST00000554264 DSG3P32926 999 aa13.55□□□□□ -0.24
VPS33B-203ENST00000554264 ABCB7O75027 752 aa13.51□□□□□ -0.25
VPS33B-203ENST00000554264 POLA2Q14181 598 aa13.47□□□□□ -0.25
VPS33B-203ENST00000554264 NISCHQ9Y2I1 1504 aa13.37□□□□□ -0.27
VPS33B-203ENST00000554264 MKRN4PQ13434 485 aaPredicted RBP13.24□□□□□ -0.29
VPS33B-203ENST00000554264 ZBTB12Q9Y330 459 aaPredicted RBP13.11□□□□□ -0.31
VPS33B-203ENST00000554264 FBLN2P98095 1184 aa13.1□□□□□ -0.31
VPS33B-203ENST00000554264 OSCARQ8IYS5 282 aa13.01□□□□□ -0.33
VPS33B-203ENST00000554264 FKBP8Q14318 412 aa12.88□□□□□ -0.35
VPS33B-203ENST00000554264 SPDYE4A6NLX3 237 aa12.85□□□□□ -0.35
VPS33B-203ENST00000554264 SPDYE2BA6NHP3 402 aa12.83□□□□□ -0.36
VPS33B-203ENST00000554264 SPDYE6P0CI01 402 aa12.83□□□□□ -0.36
VPS33B-203ENST00000554264 SPDYE2Q495Y8 402 aa12.83□□□□□ -0.36
VPS33B-203ENST00000554264 ZNF692Q9BU19 519 aaPredicted RBP12.8□□□□□ -0.36
VPS33B-203ENST00000554264 RBM42Q9BTD8 480 aaKnown RBP12.78□□□□□ -0.36
VPS33B-203ENST00000554264 SSUH2Q9Y2M2 353 aa12.78□□□□□ -0.36
VPS33B-203ENST00000554264 PROM2Q8N271 834 aa12.68□□□□□ -0.38
VPS33B-203ENST00000554264 AKT1S1Q96B36 256 aa12.68□□□□□ -0.38
VPS33B-203ENST00000554264 PABPN1Q86U42 306 aaKnown RBP eCLIP12.65□□□□□ -0.38
VPS33B-203ENST00000554264 REM2Q8IYK8 340 aaPredicted RBP12.61□□□□□ -0.39
VPS33B-203ENST00000554264 PITPNM1O00562 1244 aa12.46□□□□□ -0.41
VPS33B-203ENST00000554264 SPDYE1Q8NFV5 336 aaPredicted RBP12.44□□□□□ -0.42
VPS33B-203ENST00000554264 CLEC11AQ9Y240 323 aa12.41□□□□□ -0.42
VPS33B-203ENST00000554264 STAG3Q9UJ98 1225 aa12.35□□□□□ -0.43
VPS33B-203ENST00000554264 CHRDL2Q6WN34 429 aa12.33□□□□□ -0.44
VPS33B-203ENST00000554264 FBXO3Q9UK99 471 aa12.32□□□□□ -0.44
VPS33B-203ENST00000554264 ABCC9O60706 1549 aa12.3□□□□□ -0.44
VPS33B-203ENST00000554264 PRR29P0C7W0 189 aa12.29□□□□□ -0.44
VPS33B-203ENST00000554264 VASPP50552 380 aaPredicted RBP12.24□□□□□ -0.45
VPS33B-203ENST00000554264 FXR2P51116 673 aaKnown RBP eCLIP12.24□□□□□ -0.45
VPS33B-203ENST00000554264 PIP4P2Q8N4L2 257 aa12.21□□□□□ -0.45
VPS33B-203ENST00000554264 CREBZFQ9NS37 354 aa12.21□□□□□ -0.45
VPS33B-203ENST00000554264 CHADLQ6NUI6 762 aa12.18□□□□□ -0.46
VPS33B-203ENST00000554264 MIER1Q8N108 512 aa12.18□□□□□ -0.46
VPS33B-203ENST00000554264 IFNLR1Q8IU57 520 aaPredicted RBP12.14□□□□□ -0.47
VPS33B-203ENST00000554264 PRKAR2AP13861 404 aaKnown RBP12.13□□□□□ -0.47
VPS33B-203ENST00000554264 PLCD3Q8N3E9 789 aa12.12□□□□□ -0.47
VPS33B-203ENST00000554264 MNX1P50219 401 aaPredicted RBP12.11□□□□□ -0.47
VPS33B-203ENST00000554264 CCDC180Q9P1Z9 1646 aa12.09□□□□□ -0.47
VPS33B-203ENST00000554264 FARP1Q9Y4F1 1045 aaPredicted RBP12.02□□□□□ -0.49
VPS33B-203ENST00000554264 KLHL34Q8N239 644 aa11.99□□□□□ -0.49
VPS33B-203ENST00000554264 PLEKHG5O94827 1062 aa11.98□□□□□ -0.49
VPS33B-203ENST00000554264 POTEHQ6S545 545 aa11.96□□□□□ -0.49
VPS33B-203ENST00000554264 NUBP1P53384 320 aa11.93□□□□□ -0.5
VPS33B-203ENST00000554264 ZBTB47Q9UFB7 747 aaPredicted RBP11.92□□□□□ -0.5
VPS33B-203ENST00000554264 SPOCK2Q92563 424 aa11.9□□□□□ -0.5
VPS33B-203ENST00000554264 NPM1P06748 294 aaKnown RBP eCLIP11.88□□□□□ -0.51
VPS33B-203ENST00000554264 RASEFQ8IZ41 740 aa11.88□□□□□ -0.51
VPS33B-203ENST00000554264 C19orf67A6NJJ6 358 aa11.82□□□□□ -0.52
VPS33B-203ENST00000554264 EVX2Q03828 476 aa11.82□□□□□ -0.52
VPS33B-203ENST00000554264 TSPYL2Q9H2G4 693 aaPredicted RBP11.78□□□□□ -0.52
VPS33B-203ENST00000554264 HAX1O00165 279 aa11.77□□□□□ -0.53
VPS33B-203ENST00000554264 CD44P16070 742 aaKnown RBP11.77□□□□□ -0.53
VPS33B-203ENST00000554264 DCAF8Q5TAQ9 597 aa11.75□□□□□ -0.53
VPS33B-203ENST00000554264 RTN4Q9NQC3 1192 aaKnown RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms