RNA–Protein interactions for RNA: ENST00000554258.1

NEK9-204, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-204ENST00000554258 NISCHQ9Y2I1 1504 aa43.64■■■■■ 4.58
NEK9-204ENST00000554258 ABCC9O60706 1549 aa41.08■■■■■ 4.17
NEK9-204ENST00000554258 CCDC180Q9P1Z9 1646 aa39.78■■■■□ 3.96
NEK9-204ENST00000554258 DNAJC5BQ9UF47 199 aa39.66■■■■□ 3.94
NEK9-204ENST00000554258 RB1CC1Q8TDY2 1594 aa38.51■■■■□ 3.76
NEK9-204ENST00000554258 PABPN1Q86U42 306 aaKnown RBP eCLIP38.01■■■■□ 3.68
NEK9-204ENST00000554258 NACADO15069 1562 aa37.9■■■■□ 3.66
NEK9-204ENST00000554258 UNC13AQ9UPW8 1703 aa37.68■■■■□ 3.62
NEK9-204ENST00000554258 DCAF8L2P0C7V8 631 aa37.47■■■■□ 3.59
NEK9-204ENST00000554258 DNAJC5Q9H3Z4 198 aa37.41■■■■□ 3.58
NEK9-204ENST00000554258 BICRAQ9NZM4 1560 aa37.41■■■■□ 3.58
NEK9-204ENST00000554258 CECR2Q9BXF3 1484 aa37.13■■■■□ 3.54
NEK9-204ENST00000554258 CC2D2AQ9P2K1 1620 aa37.03■■■■□ 3.52
NEK9-204ENST00000554258 MYO15BQ96JP2 1530 aa36.9■■■■□ 3.5
NEK9-204ENST00000554258 SHROOM4Q9ULL8 1493 aa36.75■■■■□ 3.47
NEK9-204ENST00000554258 EIF4G1Q04637 1599 aaKnown RBP36.61■■■■□ 3.45
NEK9-204ENST00000554258 SCRIBQ14160 1630 aa36.18■■■■□ 3.38
NEK9-204ENST00000554258 DCAF1Q9Y4B6 1507 aa35.94■■■■□ 3.34
NEK9-204ENST00000554258 CUX2O14529 1486 aa35.92■■■■□ 3.34
NEK9-204ENST00000554258 ZCCHC6Q5VYS8 1495 aaKnown RBP35.87■■■■□ 3.33
NEK9-204ENST00000554258 ERCC6Q03468 1493 aa35.59■■■■□ 3.29
NEK9-204ENST00000554258 TRIM41Q8WV44 630 aa35.28■■■■□ 3.24
NEK9-204ENST00000554258 NCAPD3P42695 1498 aa34.97■■■■□ 3.19
NEK9-204ENST00000554258 NESP48681 1621 aa34.88■■■■□ 3.17
NEK9-204ENST00000554258 THOC2Q8NI27 1593 aaKnown RBP34.81■■■■□ 3.16
NEK9-204ENST00000554258 ATAD2BQ9ULI0 1458 aa34.7■■■■□ 3.15
NEK9-204ENST00000554258 HMGXB3Q12766 1538 aa34.62■■■■□ 3.13
NEK9-204ENST00000554258 SMARCA2P51531 1590 aa34.56■■■■□ 3.12
NEK9-204ENST00000554258 LAMC3Q9Y6N6 1575 aa34.45■■■■□ 3.1
NEK9-204ENST00000554258 KIF21AQ7Z4S6 1674 aa34.44■■■■□ 3.1
NEK9-204ENST00000554258 SMARCA4P51532 1647 aa34.35■■■■□ 3.09
NEK9-204ENST00000554258 BAZ1BQ9UIG0 1483 aaKnown RBP34.32■■■■□ 3.08
NEK9-204ENST00000554258 PDS5BQ9NTI5 1447 aa34.29■■■■□ 3.08
NEK9-204ENST00000554258 BAZ1AQ9NRL2 1556 aaPredicted RBP34.2■■■■□ 3.07
NEK9-204ENST00000554258 MRC2Q9UBG0 1479 aa34.07■■■■□ 3.04
NEK9-204ENST00000554258 OSCARQ8IYS5 282 aa34.06■■■■□ 3.04
NEK9-204ENST00000554258 WDR62O43379 1518 aa34.02■■■■□ 3.04
NEK9-204ENST00000554258 PEG3Q9GZU2 1588 aa33.99■■■■□ 3.03
NEK9-204ENST00000554258 CADPSQ9ULU8 1353 aa33.85■■■■□ 3.01
NEK9-204ENST00000554258 RIMBP3CA6NJZ7 1639 aa33.81■■■■□ 3
NEK9-204ENST00000554258 RIMBP3BA6NNM3 1639 aa33.81■■■■□ 3
NEK9-204ENST00000554258 RIMBP3Q9UFD9 1639 aa33.81■■■■□ 3
NEK9-204ENST00000554258 CEP164Q9UPV0 1460 aa33.68■■■□□ 2.98
NEK9-204ENST00000554258 MROH2BQ7Z745 1585 aa33.61■■■□□ 2.97
NEK9-204ENST00000554258 ARHGEF11O15085 1522 aa33.53■■■□□ 2.96
NEK9-204ENST00000554258 FANCD2Q9BXW9 1451 aa33.5■■■□□ 2.95
NEK9-204ENST00000554258 AEBP2Q6ZN18 517 aaPredicted RBP33.5■■■□□ 2.95
NEK9-204ENST00000554258 TRHP20396 242 aaPredicted RBP33.48■■■□□ 2.95
NEK9-204ENST00000554258 CYB5RLQ6IPT4 315 aa33.38■■■□□ 2.93
NEK9-204ENST00000554258 URB2Q14146 1524 aaKnown RBP33.31■■■□□ 2.92
NEK9-204ENST00000554258 CFTRP13569 1480 aa33.18■■■□□ 2.9
NEK9-204ENST00000554258 WIZO95785 1651 aa33.18■■■□□ 2.9
NEK9-204ENST00000554258 ZNF608Q9ULD9 1512 aaPredicted RBP33.12■■■□□ 2.89
NEK9-204ENST00000554258 ARAP1Q96P48 1450 aa33.11■■■□□ 2.89
NEK9-204ENST00000554258 IFT140Q96RY7 1462 aa33.04■■■□□ 2.88
NEK9-204ENST00000554258 CHD1O14646 1710 aa32.94■■■□□ 2.86
NEK9-204ENST00000554258 EIF4G3O43432 1585 aaKnown RBP32.9■■■□□ 2.86
NEK9-204ENST00000554258 RSF1Q96T23 1441 aaPredicted RBP32.88■■■□□ 2.85
NEK9-204ENST00000554258 PRDM2Q13029 1718 aa32.85■■■□□ 2.85
NEK9-204ENST00000554258 FBLN2P98095 1184 aa32.75■■■□□ 2.83
NEK9-204ENST00000554258 TOPBP1Q92547 1522 aa32.72■■■□□ 2.83
NEK9-204ENST00000554258 AQRO60306 1485 aaKnown RBP eCLIP32.65■■■□□ 2.82
NEK9-204ENST00000554258 TOP2AP11388 1531 aaKnown RBP32.65■■■□□ 2.82
NEK9-204ENST00000554258 ABCC8Q09428 1581 aa32.56■■■□□ 2.8
NEK9-204ENST00000554258 TARBP1Q13395 1621 aaKnown RBP32.53■■■□□ 2.8
NEK9-204ENST00000554258 DNMBPQ6XZF7 1577 aa32.49■■■□□ 2.79
NEK9-204ENST00000554258 CLASP1Q7Z460 1538 aa32.46■■■□□ 2.79
NEK9-204ENST00000554258 SYNJ1O43426 1573 aa32.36■■■□□ 2.77
NEK9-204ENST00000554258 POLA1P09884 1462 aaPredicted RBP32.29■■■□□ 2.76
NEK9-204ENST00000554258 SNAPC4Q5SXM2 1469 aa32.29■■■□□ 2.76
NEK9-204ENST00000554258 CCDC88BA6NC98 1476 aa32.28■■■□□ 2.76
NEK9-204ENST00000554258 CHMP7Q8WUX9 453 aaPredicted RBP32.27■■■□□ 2.76
NEK9-204ENST00000554258 GAPVD1Q14C86 1478 aa32.24■■■□□ 2.75
NEK9-204ENST00000554258 TDRD9Q8NDG6 1382 aaKnown RBP32.24■■■□□ 2.75
NEK9-204ENST00000554258 ILDR1Q86SU0 546 aaPredicted RBP32.2■■■□□ 2.75
NEK9-204ENST00000554258 RAD54L2Q9Y4B4 1467 aa32.2■■■□□ 2.75
NEK9-204ENST00000554258 MAGI1Q96QZ7 1491 aaPredicted RBP32.15■■■□□ 2.74
NEK9-204ENST00000554258 SOGA1O94964 1423 aa32.13■■■□□ 2.73
NEK9-204ENST00000554258 WDR97A6NE52 1622 aa32.11■■■□□ 2.73
NEK9-204ENST00000554258 SYNJ2O15056 1496 aa32.06■■■□□ 2.72
NEK9-204ENST00000554258 GRIN2BQ13224 1484 aa32.01■■■□□ 2.71
NEK9-204ENST00000554258 KIF13AQ9H1H9 1805 aa31.94■■■□□ 2.7
NEK9-204ENST00000554258 FGD5Q6ZNL6 1462 aa31.91■■■□□ 2.7
NEK9-204ENST00000554258 ERCC6L2Q5T890 1561 aa31.87■■■□□ 2.69
NEK9-204ENST00000554258 PBRM1Q86U86 1689 aa31.84■■■□□ 2.69
NEK9-204ENST00000554258 KDM4FA0A1W2PPD8 638 aa31.77■■■□□ 2.68
NEK9-204ENST00000554258 CEP170Q5SW79 1584 aa31.7■■■□□ 2.67
NEK9-204ENST00000554258 CUX1P39880 1505 aa31.66■■■□□ 2.66
NEK9-204ENST00000554258 GRIN2AQ12879 1464 aa31.59■■■□□ 2.65
NEK9-204ENST00000554258 FAM69CQ0P6D2 419 aa31.59■■■□□ 2.65
NEK9-204ENST00000554258 SHROOM2Q13796 1616 aa31.56■■■□□ 2.64
NEK9-204ENST00000554258 KDM6BO15054 1643 aa31.55■■■□□ 2.64
NEK9-204ENST00000554258 ABCA5Q8WWZ7 1642 aa31.55■■■□□ 2.64
NEK9-204ENST00000554258 ABCC10Q5T3U5 1492 aa31.53■■■□□ 2.64
NEK9-204ENST00000554258 NUP160Q12769 1436 aa31.51■■■□□ 2.64
NEK9-204ENST00000554258 ABCA10Q8WWZ4 1543 aa31.46■■■□□ 2.63
NEK9-204ENST00000554258 DIP2BQ9P265 1576 aa31.43■■■□□ 2.62
NEK9-204ENST00000554258 ADAMTS12P58397 1594 aa31.42■■■□□ 2.62
NEK9-204ENST00000554258 NPM1P06748 294 aaKnown RBP eCLIP31.39■■■□□ 2.62
NEK9-204ENST00000554258 TSPOAP1O95153 1857 aa31.38■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms