RNA–Protein interactions for RNA: ENST00000553823.5

NEK9-202, Transcript of NIMA related kinase 9, humanhuman

TSL 5

Gene NEK9, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-202ENST00000553823 NISCHQ9Y2I1 1504 aa27.28■■□□□ 1.96
NEK9-202ENST00000553823 AEBP2Q6ZN18 517 aaPredicted RBP24.58■■□□□ 1.53
NEK9-202ENST00000553823 CCDC180Q9P1Z9 1646 aa23.98■■□□□ 1.43
NEK9-202ENST00000553823 CHIC1Q5VXU3 224 aa23.26■■□□□ 1.31
NEK9-202ENST00000553823 ABCC9O60706 1549 aa22.87■■□□□ 1.25
NEK9-202ENST00000553823 ZCCHC6Q5VYS8 1495 aaKnown RBP22.85■■□□□ 1.25
NEK9-202ENST00000553823 DCAF1Q9Y4B6 1507 aa22.59■■□□□ 1.21
NEK9-202ENST00000553823 DCAF8L2P0C7V8 631 aa22.59■■□□□ 1.21
NEK9-202ENST00000553823 MYO15BQ96JP2 1530 aa22.45■■□□□ 1.18
NEK9-202ENST00000553823 NACADO15069 1562 aa22.39■■□□□ 1.18
NEK9-202ENST00000553823 RB1CC1Q8TDY2 1594 aa22.26■■□□□ 1.15
NEK9-202ENST00000553823 SHROOM4Q9ULL8 1493 aa21.99■■□□□ 1.11
NEK9-202ENST00000553823 SCRIBQ14160 1630 aa21.95■■□□□ 1.1
NEK9-202ENST00000553823 UNC13AQ9UPW8 1703 aa21.81■■□□□ 1.08
NEK9-202ENST00000553823 BICRAQ9NZM4 1560 aa21.57■■□□□ 1.04
NEK9-202ENST00000553823 PABPN1Q86U42 306 aaKnown RBP eCLIP21.5■■□□□ 1.03
NEK9-202ENST00000553823 CECR2Q9BXF3 1484 aa21.2■□□□□ 0.98
NEK9-202ENST00000553823 BAZ1AQ9NRL2 1556 aaPredicted RBP21.1■□□□□ 0.97
NEK9-202ENST00000553823 MROH2BQ7Z745 1585 aa21.05■□□□□ 0.96
NEK9-202ENST00000553823 SMARCA4P51532 1647 aa21.04■□□□□ 0.96
NEK9-202ENST00000553823 RSF1Q96T23 1441 aaPredicted RBP21.04■□□□□ 0.96
NEK9-202ENST00000553823 SUPT5HO00267 1087 aaKnown RBP21.02■□□□□ 0.96
NEK9-202ENST00000553823 EIF4G1Q04637 1599 aaKnown RBP20.95■□□□□ 0.94
NEK9-202ENST00000553823 SENP3Q9H4L4 574 aaPredicted RBP20.89■□□□□ 0.93
NEK9-202ENST00000553823 WIZO95785 1651 aa20.87■□□□□ 0.93
NEK9-202ENST00000553823 PEG3Q9GZU2 1588 aa20.81■□□□□ 0.92
NEK9-202ENST00000553823 SMARCA2P51531 1590 aa20.77■□□□□ 0.92
NEK9-202ENST00000553823 ATAD2BQ9ULI0 1458 aa20.76■□□□□ 0.91
NEK9-202ENST00000553823 CC2D2AQ9P2K1 1620 aa20.71■□□□□ 0.91
NEK9-202ENST00000553823 TOP2AP11388 1531 aaKnown RBP20.67■□□□□ 0.9
NEK9-202ENST00000553823 PHF23Q9BUL5 403 aaPredicted RBP20.66■□□□□ 0.9
NEK9-202ENST00000553823 NCAPD3P42695 1498 aa20.65■□□□□ 0.9
NEK9-202ENST00000553823 BAZ1BQ9UIG0 1483 aaKnown RBP20.63■□□□□ 0.89
NEK9-202ENST00000553823 HMGXB3Q12766 1538 aa20.6■□□□□ 0.89
NEK9-202ENST00000553823 CCDC88BA6NC98 1476 aa20.43■□□□□ 0.86
NEK9-202ENST00000553823 DNAJC5BQ9UF47 199 aa20.42■□□□□ 0.86
NEK9-202ENST00000553823 CFTRP13569 1480 aa20.1■□□□□ 0.81
NEK9-202ENST00000553823 CADPSQ9ULU8 1353 aa20.09■□□□□ 0.81
NEK9-202ENST00000553823 PRDM2Q13029 1718 aa20.04■□□□□ 0.8
NEK9-202ENST00000553823 LAMC3Q9Y6N6 1575 aa20.01■□□□□ 0.79
NEK9-202ENST00000553823 NESP48681 1621 aa19.98■□□□□ 0.79
NEK9-202ENST00000553823 ABCC8Q09428 1581 aa19.88■□□□□ 0.77
NEK9-202ENST00000553823 FANCD2Q9BXW9 1451 aa19.86■□□□□ 0.77
NEK9-202ENST00000553823 PDS5BQ9NTI5 1447 aa19.85■□□□□ 0.77
NEK9-202ENST00000553823 WRNQ14191 1432 aaPredicted RBP eCLIP19.82■□□□□ 0.76
NEK9-202ENST00000553823 TRIM41Q8WV44 630 aa19.81■□□□□ 0.76
NEK9-202ENST00000553823 CEP164Q9UPV0 1460 aa19.78■□□□□ 0.76
NEK9-202ENST00000553823 KIF21AQ7Z4S6 1674 aa19.78■□□□□ 0.76
NEK9-202ENST00000553823 SYNJ1O43426 1573 aa19.74■□□□□ 0.75
NEK9-202ENST00000553823 TOP2BQ02880 1626 aa19.71■□□□□ 0.75
NEK9-202ENST00000553823 CUX1P39880 1505 aa19.71■□□□□ 0.75
NEK9-202ENST00000553823 BIVM-ERCC5R4GMW8 1640 aa19.7■□□□□ 0.74
NEK9-202ENST00000553823 ERCC6Q03468 1493 aa19.66■□□□□ 0.74
NEK9-202ENST00000553823 DNMBPQ6XZF7 1577 aa19.65■□□□□ 0.74
NEK9-202ENST00000553823 URB2Q14146 1524 aaKnown RBP19.62■□□□□ 0.73
NEK9-202ENST00000553823 TOPBP1Q92547 1522 aa19.62■□□□□ 0.73
NEK9-202ENST00000553823 MRC2Q9UBG0 1479 aa19.61■□□□□ 0.73
NEK9-202ENST00000553823 FGD5Q6ZNL6 1462 aa19.54■□□□□ 0.72
NEK9-202ENST00000553823 FOXD1Q16676 465 aa19.53■□□□□ 0.72
NEK9-202ENST00000553823 THOC2Q8NI27 1593 aaKnown RBP19.53■□□□□ 0.72
NEK9-202ENST00000553823 WDR62O43379 1518 aa19.52■□□□□ 0.72
NEK9-202ENST00000553823 POLA1P09884 1462 aaPredicted RBP19.49■□□□□ 0.71
NEK9-202ENST00000553823 SOGA1O94964 1423 aa19.44■□□□□ 0.7
NEK9-202ENST00000553823 RAD54L2Q9Y4B4 1467 aa19.41■□□□□ 0.7
NEK9-202ENST00000553823 FAM9AQ8IZU1 332 aaPredicted RBP19.41■□□□□ 0.7
NEK9-202ENST00000553823 EEA1Q15075 1411 aa19.41■□□□□ 0.7
NEK9-202ENST00000553823 RUSC2Q8N2Y8 1516 aa19.39■□□□□ 0.69
NEK9-202ENST00000553823 ABCA10Q8WWZ4 1543 aa19.37■□□□□ 0.69
NEK9-202ENST00000553823 CUX2O14529 1486 aa19.37■□□□□ 0.69
NEK9-202ENST00000553823 KIF27Q86VH2 1401 aa19.36■□□□□ 0.69
NEK9-202ENST00000553823 TARBP1Q13395 1621 aaKnown RBP19.36■□□□□ 0.69
NEK9-202ENST00000553823 WDR97A6NE52 1622 aa19.35■□□□□ 0.69
NEK9-202ENST00000553823 IFT140Q96RY7 1462 aa19.33■□□□□ 0.68
NEK9-202ENST00000553823 CSRNP3Q8WYN3 585 aa19.3■□□□□ 0.68
NEK9-202ENST00000553823 TDRD9Q8NDG6 1382 aaKnown RBP19.25■□□□□ 0.67
NEK9-202ENST00000553823 ABCA5Q8WWZ7 1642 aa19.25■□□□□ 0.67
NEK9-202ENST00000553823 GAPVD1Q14C86 1478 aa19.22■□□□□ 0.67
NEK9-202ENST00000553823 IGF1RP08069 1367 aa19.2■□□□□ 0.66
NEK9-202ENST00000553823 ZNF608Q9ULD9 1512 aaPredicted RBP19.2■□□□□ 0.66
NEK9-202ENST00000553823 AQRO60306 1485 aaKnown RBP eCLIP19.18■□□□□ 0.66
NEK9-202ENST00000553823 LOC105371045A0A1W2PR82 267 aa19.18■□□□□ 0.66
NEK9-202ENST00000553823 KIF21BO75037 1637 aa19.17■□□□□ 0.66
NEK9-202ENST00000553823 ERICH3Q5RHP9 1530 aa19.15■□□□□ 0.66
NEK9-202ENST00000553823 EIF4G3O43432 1585 aaKnown RBP19.15■□□□□ 0.66
NEK9-202ENST00000553823 PBRM1Q86U86 1689 aa19.14■□□□□ 0.66
NEK9-202ENST00000553823 PRXQ9BXM0 1461 aa19.14■□□□□ 0.65
NEK9-202ENST00000553823 GRIN2BQ13224 1484 aa19.12■□□□□ 0.65
NEK9-202ENST00000553823 CUL7Q14999 1698 aa19.11■□□□□ 0.65
NEK9-202ENST00000553823 CARMIL1Q5VZK9 1371 aa19.11■□□□□ 0.65
NEK9-202ENST00000553823 EHMT2Q96KQ7 1210 aa19.11■□□□□ 0.65
NEK9-202ENST00000553823 GOLGA3Q08378 1498 aa19.1■□□□□ 0.65
NEK9-202ENST00000553823 RAPGEF2Q9Y4G8 1499 aa19.08■□□□□ 0.64
NEK9-202ENST00000553823 UBTFP17480 764 aaKnown RBP19.02■□□□□ 0.64
NEK9-202ENST00000553823 ADAMTS12P58397 1594 aa19.02■□□□□ 0.63
NEK9-202ENST00000553823 FHAD1B1AJZ9 1412 aa19.01■□□□□ 0.63
NEK9-202ENST00000553823 SNAPC4Q5SXM2 1469 aa19.01■□□□□ 0.63
NEK9-202ENST00000553823 MAGI1Q96QZ7 1491 aaPredicted RBP19■□□□□ 0.63
NEK9-202ENST00000553823 TNIKQ9UKE5 1360 aa18.99■□□□□ 0.63
NEK9-202ENST00000553823 SYNJ2O15056 1496 aa18.92■□□□□ 0.62
NEK9-202ENST00000553823 CHMP7Q8WUX9 453 aaPredicted RBP18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms