RNA–Protein interactions for RNA: ENST00000553384.5

RDH11-203, Transcript of retinol dehydrogenase 11, humanhuman

TSL 1 (best) BASIC

Gene RDH11, Length 1,926 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDH11-203ENST00000553384 NISCHQ9Y2I1 1504 aa17.34■□□□□ 0.37
RDH11-203ENST00000553384 ABCC9O60706 1549 aa15.88■□□□□ 0.13
RDH11-203ENST00000553384 CCDC180Q9P1Z9 1646 aa15.66■□□□□ 0.1
RDH11-203ENST00000553384 DNAJC5BQ9UF47 199 aa15.17■□□□□ 0.02
RDH11-203ENST00000553384 RB1CC1Q8TDY2 1594 aa15.05■□□□□ -0
RDH11-203ENST00000553384 NACADO15069 1562 aa14.91□□□□□ -0.02
RDH11-203ENST00000553384 PABPN1Q86U42 306 aaKnown RBP eCLIP14.76□□□□□ -0.05
RDH11-203ENST00000553384 DCAF8L2P0C7V8 631 aa14.72□□□□□ -0.05
RDH11-203ENST00000553384 MYO15BQ96JP2 1530 aa14.67□□□□□ -0.06
RDH11-203ENST00000553384 UNC13AQ9UPW8 1703 aa14.61□□□□□ -0.07
RDH11-203ENST00000553384 BICRAQ9NZM4 1560 aa14.59□□□□□ -0.07
RDH11-203ENST00000553384 SHROOM4Q9ULL8 1493 aa14.47□□□□□ -0.09
RDH11-203ENST00000553384 CECR2Q9BXF3 1484 aa14.38□□□□□ -0.11
RDH11-203ENST00000553384 DCAF1Q9Y4B6 1507 aa14.36□□□□□ -0.11
RDH11-203ENST00000553384 CC2D2AQ9P2K1 1620 aa14.34□□□□□ -0.11
RDH11-203ENST00000553384 ZCCHC6Q5VYS8 1495 aaKnown RBP14.31□□□□□ -0.12
RDH11-203ENST00000553384 EIF4G1Q04637 1599 aaKnown RBP14.27□□□□□ -0.13
RDH11-203ENST00000553384 DNAJC5Q9H3Z4 198 aa14.19□□□□□ -0.14
RDH11-203ENST00000553384 SCRIBQ14160 1630 aa14.18□□□□□ -0.14
RDH11-203ENST00000553384 AEBP2Q6ZN18 517 aaPredicted RBP14.09□□□□□ -0.15
RDH11-203ENST00000553384 CUX2O14529 1486 aa13.88□□□□□ -0.19
RDH11-203ENST00000553384 NCAPD3P42695 1498 aa13.79□□□□□ -0.2
RDH11-203ENST00000553384 ERCC6Q03468 1493 aa13.76□□□□□ -0.21
RDH11-203ENST00000553384 ATAD2BQ9ULI0 1458 aa13.67□□□□□ -0.22
RDH11-203ENST00000553384 HMGXB3Q12766 1538 aa13.63□□□□□ -0.23
RDH11-203ENST00000553384 SMARCA2P51531 1590 aa13.62□□□□□ -0.23
RDH11-203ENST00000553384 NESP48681 1621 aa13.55□□□□□ -0.24
RDH11-203ENST00000553384 SMARCA4P51532 1647 aa13.55□□□□□ -0.24
RDH11-203ENST00000553384 CHIC1Q5VXU3 224 aa13.54□□□□□ -0.24
RDH11-203ENST00000553384 BAZ1BQ9UIG0 1483 aaKnown RBP13.51□□□□□ -0.25
RDH11-203ENST00000553384 BAZ1AQ9NRL2 1556 aaPredicted RBP13.48□□□□□ -0.25
RDH11-203ENST00000553384 LAMC3Q9Y6N6 1575 aa13.48□□□□□ -0.25
RDH11-203ENST00000553384 THOC2Q8NI27 1593 aaKnown RBP13.48□□□□□ -0.25
RDH11-203ENST00000553384 PEG3Q9GZU2 1588 aa13.47□□□□□ -0.25
RDH11-203ENST00000553384 PDS5BQ9NTI5 1447 aa13.45□□□□□ -0.26
RDH11-203ENST00000553384 TRIM41Q8WV44 630 aa13.37□□□□□ -0.27
RDH11-203ENST00000553384 CADPSQ9ULU8 1353 aa13.35□□□□□ -0.27
RDH11-203ENST00000553384 KIF21AQ7Z4S6 1674 aa13.35□□□□□ -0.27
RDH11-203ENST00000553384 MROH2BQ7Z745 1585 aa13.32□□□□□ -0.28
RDH11-203ENST00000553384 MRC2Q9UBG0 1479 aa13.31□□□□□ -0.28
RDH11-203ENST00000553384 WDR62O43379 1518 aa13.28□□□□□ -0.28
RDH11-203ENST00000553384 OSCARQ8IYS5 282 aa13.22□□□□□ -0.29
RDH11-203ENST00000553384 CEP164Q9UPV0 1460 aa13.2□□□□□ -0.3
RDH11-203ENST00000553384 FANCD2Q9BXW9 1451 aa13.16□□□□□ -0.3
RDH11-203ENST00000553384 CFTRP13569 1480 aa13.13□□□□□ -0.31
RDH11-203ENST00000553384 WIZO95785 1651 aa13.11□□□□□ -0.31
RDH11-203ENST00000553384 URB2Q14146 1524 aaKnown RBP13.05□□□□□ -0.32
RDH11-203ENST00000553384 RSF1Q96T23 1441 aaPredicted RBP12.98□□□□□ -0.33
RDH11-203ENST00000553384 TOP2AP11388 1531 aaKnown RBP12.98□□□□□ -0.33
RDH11-203ENST00000553384 RIMBP3CA6NJZ7 1639 aa12.98□□□□□ -0.33
RDH11-203ENST00000553384 RIMBP3BA6NNM3 1639 aa12.98□□□□□ -0.33
RDH11-203ENST00000553384 RIMBP3Q9UFD9 1639 aa12.98□□□□□ -0.33
RDH11-203ENST00000553384 IFT140Q96RY7 1462 aa12.97□□□□□ -0.33
RDH11-203ENST00000553384 ARHGEF11O15085 1522 aa12.94□□□□□ -0.34
RDH11-203ENST00000553384 ZNF608Q9ULD9 1512 aaPredicted RBP12.91□□□□□ -0.34
RDH11-203ENST00000553384 ABCC8Q09428 1581 aa12.9□□□□□ -0.34
RDH11-203ENST00000553384 PRDM2Q13029 1718 aa12.89□□□□□ -0.35
RDH11-203ENST00000553384 CYB5RLQ6IPT4 315 aa12.88□□□□□ -0.35
RDH11-203ENST00000553384 TOPBP1Q92547 1522 aa12.87□□□□□ -0.35
RDH11-203ENST00000553384 CCDC88BA6NC98 1476 aa12.84□□□□□ -0.35
RDH11-203ENST00000553384 TRHP20396 242 aaPredicted RBP12.82□□□□□ -0.36
RDH11-203ENST00000553384 EIF4G3O43432 1585 aaKnown RBP12.81□□□□□ -0.36
RDH11-203ENST00000553384 DNMBPQ6XZF7 1577 aa12.8□□□□□ -0.36
RDH11-203ENST00000553384 AQRO60306 1485 aaKnown RBP eCLIP12.78□□□□□ -0.368e-7■■■■■ 28.7
RDH11-203ENST00000553384 ARAP1Q96P48 1450 aa12.78□□□□□ -0.36
RDH11-203ENST00000553384 TARBP1Q13395 1621 aaKnown RBP12.76□□□□□ -0.37
RDH11-203ENST00000553384 FBLN2P98095 1184 aa12.75□□□□□ -0.37
RDH11-203ENST00000553384 CHD1O14646 1710 aa12.74□□□□□ -0.37
RDH11-203ENST00000553384 POLA1P09884 1462 aaPredicted RBP12.72□□□□□ -0.37
RDH11-203ENST00000553384 SUPT5HO00267 1087 aaKnown RBP12.69□□□□□ -0.38
RDH11-203ENST00000553384 SOGA1O94964 1423 aa12.69□□□□□ -0.38
RDH11-203ENST00000553384 WDR97A6NE52 1622 aa12.68□□□□□ -0.38
RDH11-203ENST00000553384 TDRD9Q8NDG6 1382 aaKnown RBP12.67□□□□□ -0.38
RDH11-203ENST00000553384 CHMP7Q8WUX9 453 aaPredicted RBP12.66□□□□□ -0.38
RDH11-203ENST00000553384 CLASP1Q7Z460 1538 aa12.65□□□□□ -0.38
RDH11-203ENST00000553384 RAD54L2Q9Y4B4 1467 aa12.65□□□□□ -0.38
RDH11-203ENST00000553384 MAGI1Q96QZ7 1491 aaPredicted RBP12.64□□□□□ -0.39
RDH11-203ENST00000553384 SYNJ1O43426 1573 aa12.64□□□□□ -0.39
RDH11-203ENST00000553384 SNAPC4Q5SXM2 1469 aa12.64□□□□□ -0.39
RDH11-203ENST00000553384 GRIN2BQ13224 1484 aa12.61□□□□□ -0.39
RDH11-203ENST00000553384 SYNJ2O15056 1496 aa12.59□□□□□ -0.39
RDH11-203ENST00000553384 FGD5Q6ZNL6 1462 aa12.59□□□□□ -0.39
RDH11-203ENST00000553384 GAPVD1Q14C86 1478 aa12.55□□□□□ -0.4
RDH11-203ENST00000553384 CUX1P39880 1505 aa12.53□□□□□ -0.4
RDH11-203ENST00000553384 SENP3Q9H4L4 574 aaPredicted RBP12.49□□□□□ -0.41
RDH11-203ENST00000553384 ABCA10Q8WWZ4 1543 aa12.47□□□□□ -0.41
RDH11-203ENST00000553384 PBRM1Q86U86 1689 aa12.45□□□□□ -0.42
RDH11-203ENST00000553384 ABCA5Q8WWZ7 1642 aa12.43□□□□□ -0.42
RDH11-203ENST00000553384 GRIN2AQ12879 1464 aa12.43□□□□□ -0.42
RDH11-203ENST00000553384 NUP160Q12769 1436 aa12.42□□□□□ -0.42
RDH11-203ENST00000553384 CEP170Q5SW79 1584 aa12.39□□□□□ -0.43
RDH11-203ENST00000553384 ERCC6L2Q5T890 1561 aa12.39□□□□□ -0.43
RDH11-203ENST00000553384 WRNQ14191 1432 aaPredicted RBP eCLIP12.38□□□□□ -0.43
RDH11-203ENST00000553384 FHAD1B1AJZ9 1412 aa12.37□□□□□ -0.43
RDH11-203ENST00000553384 SHROOM2Q13796 1616 aa12.36□□□□□ -0.43
RDH11-203ENST00000553384 ADAMTS12P58397 1594 aa12.35□□□□□ -0.43
RDH11-203ENST00000553384 ERICH3Q5RHP9 1530 aa12.32□□□□□ -0.44
RDH11-203ENST00000553384 JPH4Q96JJ6 628 aa12.31□□□□□ -0.44
RDH11-203ENST00000553384 PRG4Q92954 1404 aaPredicted RBP12.3□□□□□ -0.44
RDH11-203ENST00000553384 KIF13AQ9H1H9 1805 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms