RNA–Protein interactions for RNA: ENST00000552215.5

CHPT1-208, Transcript of choline phosphotransferase 1, humanhuman

TSL 1 (best)

Gene CHPT1, Length 4,342 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHPT1-208ENST00000552215 NISCHQ9Y2I1 1504 aa17.06■□□□□ 0.32
CHPT1-208ENST00000552215 DCAF8L2P0C7V8 631 aa15.98■□□□□ 0.15
CHPT1-208ENST00000552215 SHROOM4Q9ULL8 1493 aa15.2■□□□□ 0.02
CHPT1-208ENST00000552215 ABCC9O60706 1549 aa14.93□□□□□ -0.02
CHPT1-208ENST00000552215 SUPT5HO00267 1087 aaKnown RBP14.76□□□□□ -0.05
CHPT1-208ENST00000552215 PABPN1Q86U42 306 aaKnown RBP eCLIP14.5□□□□□ -0.09
CHPT1-208ENST00000552215 CCDC180Q9P1Z9 1646 aa14.33□□□□□ -0.12
CHPT1-208ENST00000552215 ZCCHC6Q5VYS8 1495 aaKnown RBP14.15□□□□□ -0.14
CHPT1-208ENST00000552215 EHMT2Q96KQ7 1210 aa14.11□□□□□ -0.15
CHPT1-208ENST00000552215 SCRIBQ14160 1630 aa14.06□□□□□ -0.16
CHPT1-208ENST00000552215 FAM9AQ8IZU1 332 aaPredicted RBP13.85□□□□□ -0.19
CHPT1-208ENST00000552215 RB1CC1Q8TDY2 1594 aa13.81□□□□□ -0.2
CHPT1-208ENST00000552215 NACADO15069 1562 aa13.73□□□□□ -0.21
CHPT1-208ENST00000552215 CECR2Q9BXF3 1484 aa13.62□□□□□ -0.23
CHPT1-208ENST00000552215 RANGAP1P46060 587 aaPredicted RBP13.61□□□□□ -0.23
CHPT1-208ENST00000552215 TRIM41Q8WV44 630 aa13.58□□□□□ -0.24
CHPT1-208ENST00000552215 DCAF1Q9Y4B6 1507 aa13.55□□□□□ -0.24
CHPT1-208ENST00000552215 RSF1Q96T23 1441 aaPredicted RBP13.43□□□□□ -0.26
CHPT1-208ENST00000552215 CHIC1Q5VXU3 224 aa13.43□□□□□ -0.26
CHPT1-208ENST00000552215 TTBK1Q5TCY1 1321 aaPredicted RBP13.4□□□□□ -0.26
CHPT1-208ENST00000552215 LOC105371045A0A1W2PR82 267 aa13.37□□□□□ -0.27
CHPT1-208ENST00000552215 MROH2BQ7Z745 1585 aa13.36□□□□□ -0.27
CHPT1-208ENST00000552215 DNAJC5BQ9UF47 199 aa13.35□□□□□ -0.27
CHPT1-208ENST00000552215 MYO15BQ96JP2 1530 aa13.32□□□□□ -0.28
CHPT1-208ENST00000552215 UBTFP17480 764 aaKnown RBP13.25□□□□□ -0.29
CHPT1-208ENST00000552215 PPARGC1BQ86YN6 1023 aaKnown RBP13.24□□□□□ -0.29
CHPT1-208ENST00000552215 BAZ1BQ9UIG0 1483 aaKnown RBP13.2□□□□□ -0.3
CHPT1-208ENST00000552215 WIZO95785 1651 aa13.19□□□□□ -0.3
CHPT1-208ENST00000552215 BAZ1AQ9NRL2 1556 aaPredicted RBP13.18□□□□□ -0.3
CHPT1-208ENST00000552215 ATP1B4Q9UN42 357 aaPredicted RBP13.18□□□□□ -0.3
CHPT1-208ENST00000552215 BICRAQ9NZM4 1560 aa13.17□□□□□ -0.3
CHPT1-208ENST00000552215 FBLN2P98095 1184 aa13.14□□□□□ -0.31
CHPT1-208ENST00000552215 UNC13AQ9UPW8 1703 aa13.08□□□□□ -0.32
CHPT1-208ENST00000552215 ATAD2BQ9ULI0 1458 aa13.07□□□□□ -0.32
CHPT1-208ENST00000552215 CCDC88BA6NC98 1476 aa13.04□□□□□ -0.32
CHPT1-208ENST00000552215 SMARCA4P51532 1647 aa13.04□□□□□ -0.32
CHPT1-208ENST00000552215 EIF4G1Q04637 1599 aaKnown RBP13.04□□□□□ -0.32
CHPT1-208ENST00000552215 P3H3Q8IVL6 736 aa12.97□□□□□ -0.33
CHPT1-208ENST00000552215 ARID3CA6NKF2 412 aa12.94□□□□□ -0.34
CHPT1-208ENST00000552215 CC2D2AQ9P2K1 1620 aa12.94□□□□□ -0.34
CHPT1-208ENST00000552215 SMARCA2P51531 1590 aa12.92□□□□□ -0.34
CHPT1-208ENST00000552215 APLP2Q06481 763 aa12.91□□□□□ -0.34
CHPT1-208ENST00000552215 ABCC8Q09428 1581 aa12.91□□□□□ -0.34
CHPT1-208ENST00000552215 ERCC6Q03468 1493 aa12.9□□□□□ -0.34
CHPT1-208ENST00000552215 NESP48681 1621 aa12.89□□□□□ -0.35
CHPT1-208ENST00000552215 CSRNP3Q8WYN3 585 aa12.88□□□□□ -0.35
CHPT1-208ENST00000552215 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.86□□□□□ -0.35
CHPT1-208ENST00000552215 HNRNPUL2Q1KMD3 747 aaKnown RBP12.86□□□□□ -0.35
CHPT1-208ENST00000552215 PCGF6Q9BYE7 350 aa12.86□□□□□ -0.35
CHPT1-208ENST00000552215 TOP2AP11388 1531 aaKnown RBP12.85□□□□□ -0.35
CHPT1-208ENST00000552215 WRNQ14191 1432 aaPredicted RBP eCLIP12.83□□□□□ -0.361e-7■■■■■ 66.8
CHPT1-208ENST00000552215 CADPSQ9ULU8 1353 aa12.82□□□□□ -0.36
CHPT1-208ENST00000552215 NCAPD3P42695 1498 aa12.81□□□□□ -0.36
CHPT1-208ENST00000552215 SOGA1O94964 1423 aa12.77□□□□□ -0.36
CHPT1-208ENST00000552215 TDRD9Q8NDG6 1382 aaKnown RBP12.77□□□□□ -0.37
CHPT1-208ENST00000552215 ITGAEP38570 1179 aa12.75□□□□□ -0.37
CHPT1-208ENST00000552215 CHMP7Q8WUX9 453 aaPredicted RBP12.72□□□□□ -0.37
CHPT1-208ENST00000552215 PDS5BQ9NTI5 1447 aa12.69□□□□□ -0.38
CHPT1-208ENST00000552215 FANCD2Q9BXW9 1451 aa12.69□□□□□ -0.38
CHPT1-208ENST00000552215 RUSC2Q8N2Y8 1516 aa12.68□□□□□ -0.38
CHPT1-208ENST00000552215 CUX2O14529 1486 aa12.64□□□□□ -0.39
CHPT1-208ENST00000552215 RAD54L2Q9Y4B4 1467 aa12.62□□□□□ -0.39
CHPT1-208ENST00000552215 CEP164Q9UPV0 1460 aa12.6□□□□□ -0.39
CHPT1-208ENST00000552215 CFTRP13569 1480 aa12.56□□□□□ -0.4
CHPT1-208ENST00000552215 HMGXB3Q12766 1538 aa12.55□□□□□ -0.4
CHPT1-208ENST00000552215 KIF27Q86VH2 1401 aa12.54□□□□□ -0.4
CHPT1-208ENST00000552215 AQRO60306 1485 aaKnown RBP eCLIP12.53□□□□□ -0.43e-7■■■■□ 24
CHPT1-208ENST00000552215 MYT1LQ9UL68 1186 aa12.53□□□□□ -0.4
CHPT1-208ENST00000552215 FGD5Q6ZNL6 1462 aa12.5□□□□□ -0.41
CHPT1-208ENST00000552215 CARMIL1Q5VZK9 1371 aa12.5□□□□□ -0.41
CHPT1-208ENST00000552215 FAM50AQ14320 339 aaKnown RBP12.48□□□□□ -0.41
CHPT1-208ENST00000552215 SYNJ1O43426 1573 aa12.46□□□□□ -0.42
CHPT1-208ENST00000552215 PEG3Q9GZU2 1588 aa12.45□□□□□ -0.42
CHPT1-208ENST00000552215 ZNF777Q9ULD5 760 aaPredicted RBP12.44□□□□□ -0.42
CHPT1-208ENST00000552215 KCNH8Q96L42 1107 aa12.43□□□□□ -0.42
CHPT1-208ENST00000552215 CUX1P39880 1505 aa12.43□□□□□ -0.42
CHPT1-208ENST00000552215 RAPGEF2Q9Y4G8 1499 aa12.4□□□□□ -0.42
CHPT1-208ENST00000552215 CLIP1P30622 1438 aa12.4□□□□□ -0.42
CHPT1-208ENST00000552215 TOPBP1Q92547 1522 aa12.39□□□□□ -0.43
CHPT1-208ENST00000552215 CCER1Q8TC90 406 aaPredicted RBP12.39□□□□□ -0.43
CHPT1-208ENST00000552215 CEP162Q5TB80 1403 aa12.39□□□□□ -0.43
CHPT1-208ENST00000552215 IGF1RP08069 1367 aa12.38□□□□□ -0.43
CHPT1-208ENST00000552215 TRIM26Q12899 539 aaPredicted RBP12.38□□□□□ -0.43
CHPT1-208ENST00000552215 POLA1P09884 1462 aaPredicted RBP12.37□□□□□ -0.43
CHPT1-208ENST00000552215 GOLGA3Q08378 1498 aa12.36□□□□□ -0.43
CHPT1-208ENST00000552215 URB2Q14146 1524 aaKnown RBP12.36□□□□□ -0.43
CHPT1-208ENST00000552215 MRC2Q9UBG0 1479 aa12.34□□□□□ -0.43
CHPT1-208ENST00000552215 ZNF608Q9ULD9 1512 aaPredicted RBP12.34□□□□□ -0.43
CHPT1-208ENST00000552215 GAPVD1Q14C86 1478 aa12.33□□□□□ -0.44
CHPT1-208ENST00000552215 CYB5RLQ6IPT4 315 aa12.31□□□□□ -0.44
CHPT1-208ENST00000552215 JPH4Q96JJ6 628 aa12.31□□□□□ -0.44
CHPT1-208ENST00000552215 EEA1Q15075 1411 aa12.3□□□□□ -0.44
CHPT1-208ENST00000552215 CHIC2Q9UKJ5 165 aa12.3□□□□□ -0.44
CHPT1-208ENST00000552215 LAMC3Q9Y6N6 1575 aa12.29□□□□□ -0.44
CHPT1-208ENST00000552215 NPM1P06748 294 aaKnown RBP eCLIP12.28□□□□□ -0.44
CHPT1-208ENST00000552215 TNIKQ9UKE5 1360 aa12.28□□□□□ -0.44
CHPT1-208ENST00000552215 PLPPR3Q6T4P5 718 aa12.28□□□□□ -0.44
CHPT1-208ENST00000552215 KANK4Q5T7N3 995 aaPredicted RBP12.27□□□□□ -0.45
CHPT1-208ENST00000552215 FHOD3Q2V2M9 1422 aa12.26□□□□□ -0.45
CHPT1-208ENST00000552215 OSCARQ8IYS5 282 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms